The role of β2 integrin in dendritic cell migration during infection

Dendritic cells (DCs) play a key role in shaping T cell responses. To do this, DCs must be able to migrate to the site of the infection and the lymph nodes to prime T cells and initiate the appropriate immune response. Integrins such as β2 integrin play a key role in leukocyte adhesion, migration, and cell activation. However, the role of β2 integrin in DC migration and function in the context of infection-induced inflammation in the gut is not well understood. This study looked at the role of β2 integrin in DC migration and function during infection with the nematode worm Trichuris muris. Itgb2tm1Bay mice lacking functional β2 integrin and WT littermate controls were infected with T. muris and the response to infection and kinetics of the DC response was assessed. In infection, the lack of functional β2 integrin significantly reduced DC migration to the site of infection but not the lymph nodes. The lack of functional β2 integrin did not negatively impact T cell activation in response to T. muris infection. This data suggests that β2 integrins are important in DC recruitment to the infection site potentially impacting the initiation of innate immunity but is dispensible for DC migration to lymph nodes and T cell priming in the context of T. muris infection.


Introduction
Dendritic cells (DC) play a crucial role in orchestrating T cell responses via their ability to prime and activate naïve T cells. DCs are motile cells that must migrate to the site of infection to detect the threat, as well as migrate to the lymph node to prime T cells [1]. Adhesion molecules known as integrins are important for cell migration. Integrins are expressed by a variety of cell types and mediate cellular interaction with the extracellular matrix (ECM) proteins and with other cells through surface-ligand interactions. Accordingly, they facilitate cell movement and stabilize cellular interactions [2].
The requirement of integrins for DC migration has been debated. Some studies have shown that integrins may not be necessary for DC migration and that DCs lacking functional integrins could migrate through the skin in steady-state conditions [14,15]. However, the role of integrins could differ depending upon the tissue site or in inflammation, and it remains unclear whether, DCs require integrins to home to tissues such as the gut, during an infectious challenge. In the context of gut infection, early recruitment of DC to the site of infection is driven by epithelial production of chemokines such as CCL5 [16][17][18] whereas DC migration to the lymph nodes is CCR7-dependant, but the role of β 2 integrin in this migration is not well characterized [15]. In this study, we explored the role of β 2 integrin in immune cell recruitment and its function in the context of an infectious immune challenge in the gut. We use the Itgb2 tm1-Bay model thereafter referred to as Itgb2 mut [19]. Itgb2 mut mice have a hypomorphic mutation in the cytoplasmic tail domain, which results in impaired β 2 integrin functions. The mouse phenotype resembles a moderate phenotype form of the leukocyte adhesion deficiency type-I (LAD-I) disease in humans [19].
We hypothesized that the lack of functional β 2 integrin in the Itgb2 mut mice would result in enhanced susceptibility to infection. Studies on the T. muris model have shown that a high dose of 200 infective T. muris eggs induces a robust Th2 response in resistant mice such as C57BL/6 mice [20,21], Therefore, to test our hypothesis of enhanced resistance to infection in the absence of functional β 2 integrin, we infected wild-type (WT C57 BL/6) littermate controls and Itgb2 mut mice with a high dose of T. muris eggs and determined the response to infection.

Results
Itgb2 mut mice have a reduction in DC and macrophage recruitment to the infection site in response to T. muris infection To determine whether the lack of functional β 2 integrin affected the migration of DCs and macrophages to the colon in response to T. muris infection, immunohistochemistry sections from littermate WT controls and Itgb2 mut colons were examined in before infection (Day 0) tissue and at Day 19-post infection (p.i) with T. muris. This time point of Day 19 (D19) p.i was selected, as it is a time that corresponds to peak time for detection of whether the immune response is polarised to Th2 or Th1 responses. CD11c antibodies staining revealed, that there were a decreased number of CD11c + cells in the Itgb2 mut colon p.i, as compared to littermate controls ( Fig. 1a, b, e, **p < 0.01). In contrast at Day 0 (D0) there were no differences in the numbers of CD11c cells in the gut between WT and Itgb2 mut strains. Since CD11c is not exclusively expressed by DCs and can be expressed by other cells, such as macrophages and eosinophils [22], additional markers were used in combination with CD11c to further characterize the cells as DCs (CD103) or macrophages (F4/80).
The number of F4/80 + macrophages was significantly lower in the Itgb2 mut colon p.i when compared to WT (Fig. 1c, d, f, ***p < 0.001). This observation was confirmed using flow cytometry, which demonstrated that the absolute numbers of macrophages were increased in the WT colon and not in Itgb2 mut colon p.i (Fig. 1g, * p < 0.05). This data suggests that a lack of functional β 2 integrin affects the recruitment of macrophages to the site of infection.
Immunohistochemistry also showed that the numbers of CD11c + CD103 + DCs were similar between WT and Itgb2 mut mice before infection (Fig. 2a, c, e). In response to infection, there was a marked increase in the number of CD11c + CD103 + DCs in infected WT colon that was not seen in the infected Itgb2 mut colon in which DC numbers remained low (Fig. 2b, d, e, **p < 0.01). These data suggest that the recruitment of this particular subset of DCs was affected by the lack of functional β 2 integrins during infection but not in steady-state. To further characterize DCs in the gut and draining lymph nodes, DC subsets were analyzed using flow cytometry.
In addition to the variation in the number of cells between WT and Itgb2 mut colons at D19 p.i, we have observed a different distribution of CD11c + and CDF4/80 + cells ( Fig. 1a-d) and CD11c + CD103 + cells (Fig. 2b, d) between both strains. Immunostaining showed DCs and macrophages were located both in the lamina propria and adjacent to the colonic epithelium in the WT colon at D19 p.i. However this was not mirrored in the Itgb2 mut colon as the cells were mostly found in the lamina propria.
Lamina propria cells were further analyzed using flow cytometry pre-and post-infection with a gating strategy to identify the different gut DC subsets shown in (supplementary Figure 1A). In response to infection, the number of CD11c + MHCII + F4/80 − DCs in the Itgb2 mut colon remained unchanged pre-and post-infection (Fig.  2f), numbers of colonic CD11c + MHCII + F4/80 − DCs were more variable in the WT mice p.i, but trended to be higher. An analysis of the DC subsets by flow cytometry revealed, akin to the immunohistochemistry data, that the majority of the DCs in the colon were CD103 + CD11b + DCs (Fig. 2g). CD103 + CD11b + DCs increased twofold to threefold in the infected WT colons when compared to Day 0 WT (Fig. 2g, *p < 0.05). In contrast, this subset did not increase in the Itgb2 mut colon p.i when compared to D0 and infected WT, and although reduced numbers were detected in the mutant colon p.i compared to infected WT colon this reduction was not significant (Fig. 2g).
The number of CD103 + CD11b − DCs decreased in response to the infection relative to D0 mice in both WT The absolute number of the CD103 − CD11b + subset of DCs increased moderately in the WT colons compared to the D0 and infected WT (Fig. 2i, p* < 0.05). Taken together this data suggests that the main DC subset found in the gut in this infection model was the CD103 + CD11b + DC subset and their frequency was reduced in the absence of functional β 2 integrin. To check whether there was a change in DC maturation, expression of the co-stimulatory molecule CD86 on DCs was compared using the mean fluorescence intensity (MFI) pre and post-infection. Results show that CD103 + CD11b + DCs had higher expression of CD86 at Day 5 (D5) p.i compared with naïve (D0) mice in the WT colon suggesting they were activated and becoming mature (supplementary Fig. 2A). In contrast, the same subset in the Itgb2 mut mice at Day 5PI had relatively low CD86 suggesting they were still immature (supplementary Fig. 2 A). By D19 p.i CD86 levels on gut DCs were similar to naïve (D0) levels suggesting the DCs present in the gut at this time point were immature. Expression of CD86 on the CD103 + CD11b − DCs at D5 p.i was variable and there were no significant differences seen in the WT or Itgb2mut mice compared to cells from uninfected (D0) mice (supplementary Fig. 2B). CD103 − CD11b + DCs did not show any up regulation of CD86 in either WT and Itgb2 mut colonic cells (supplementary Fig. 2C). Given the effect of β 2 on immune cell recruitment to the site of infection we next investigated whether this might impact on recruitment to the lymph node.
The lack of functional β 2 integrin did not impair CD103 + DC migration to the mesenteric lymph node (MLN) in response to infection A gating scheme to identify the DC subsets is shown in (supplementary Figure 1A). DC subsets were assessed in the MLN from naïve (D0) mice and p.i. The absolute numbers of CD11c + MHCII + F4/80 − DCs in the MLN showed no significant changes in the overall DC numbers in Itgb2 mut mice at either time point, however, this was slightly increased in WT p.i compared to day 0 ( Fig. 3a, *p < 0.05). The majority of the DCs detected in the MLN at D19 p.i were CD103 + migratory DCs in both WT and Itgb2 mut (Fig. 3b, c). The CD103 + DCs were further analyzed to identify the DC subset, and the absolute numbers showed an overall threefold increase in CD103 + CD11b + DCs in WT MLNs p.i as compared to day 0 ( Fig. 3b, *p < 0.05). There was no significant difference in the numbers of CD103 + CD11b + or CD103 + CD11b − DCs in WT and Itgb2 mut MLN between strains p.i., yet there was a trend for a reduction of these two subsets in the Itgb2 mut MLN (Fig. 3b, c). A small proportion of the CD103 − CD11b + DCs were also present in the MLNs and an increase in this subset was seen p.i in both WT and Itgb2 mut as compared to D0 (Fig. 3d, *p < 0.05). Collectively, these data suggest that DC migration to the MLN was not impaired in the Itgb2 mut mice in response to the infection, suggesting that T cell priming would be unaffected in the Itgb2 mut mice.
Adaptive immune responses to T. muris were unaltered in Itgb2 mut mice post-infection To test whether the changes in DC dynamics to the infection site impacted the development of the adaptive immune response, we assessed specific T cell responses in the MLN. We also investigated IgG, worm burden, and pathology. MLN cells were stimulated in vitro with parasite excretory/secretory (E/S) antigen for 48 h and the cytokine response analyzed. There were no significant differences between the WT and Itgb2 mut MLN cell responses in the levels of IL-6, IL-10, IFN-γ, IL-12p70, and TGF-β. However, there was a trend for elevated levels of IL-13, IL-9, IL-5, IL-17A, and TNF-α with IL-9 and IL-13 significantly increased in the Itgb2 mut MLN when compared to WT ( Fig. 4a-f *P < 0.05), which is indicative of a robust Th2 response. Consistent with such a Th2 dominated immune response; we observed a higher IgG1 response as compared with IgG2a, with both strains of mice generating T. muris-specific IgG1 (Fig. 4g, h). The overall levels of IgG were generally lower in the Itgb2 mut mice, but this was not significant (Fig. 4g, h). Collectively this data suggested that the Th2 response was, as anticipated, intact in the Itgb2 mut mice, therefore we next assessed worm burden. In line with a robust Th2 response, there was no significant difference in the worm burden between the strains (Fig. 4i). Finally, we investigated whether the reduced magnitude of DC (See figure on previous page.) Fig. 2 Recruitment of dendritic cells in response to infection was impaired by the lack of functional β 2 integrin. Itgb2 mut and WT controls were infected with 200 embryonated T. muris eggs and CD11c + CD103 + DCs in the colon were assessed by immunohistochemistry using CD11c (red), CD103 (green) and counterstained with DAPI. Representative images of immunohistochemistry staining at day 0 (a, c), and D19 (b, d) postinfection in WT and Itgb2 mut mice from one of two experiments. (e) CD11c + CD103 + DCs in the colon were enumerated and the mean of 5 fields of view per mouse was plotted, n = 4-8 mice /time point. (f, g, h, i) Colonic DCs were isolated both from WT and Itgb2 mut mice at D0 and D19 post infection, data were analysed by flow cytometry to assess DC subsets in the colon. Absolute numbers of CD45 + cells were calculated for (f) CD11c + MHCII + F4/80 − , (g) CD103 + CD11b + , (h) CD103 + CD11b − , and (i) CD103 − CD11b + (I) DC subsets in the colon, n = 4-5 mice/time point, *(P < 0.05), **(p < 0.01) recruitment in the colon in response to infection was associated with altered colon pathology. Data showed no significant changes between the colons of WT and Itgb2 mut mice in crypt length measurement or muscle wall thickness during infection (Fig. 5). However, at D23 p.i, there was an increase in crypt length and muscle wall thickness in both strains (Fig. 5e, f) suggesting the lack of DC recruitment had not impacted pathology.
Goblet cells are known to have a protective role in T. muris infection via the secretion of mucins [23]. To assess the goblet cells, we performed periodic acid Schiff (PAS) staining and enumerated the goblet cells in the colon pre-and post-infection ( Fig. 6a-d). Although no significant differences were found in the number of goblet cells of uninfected WT and Itgb2 mut mice, there was a trend of reduced goblet cells in the Itgb2 mut mice (Fig.  6a, b, i). WT mice developed a moderate goblet cell hyperplasia p.i (Fig. 6c, i, *P < 0.05), however, there was no such increase in the Itgb2 mut mice (Fig. 6d, i, **P < 0.01). Muc2 is the major mucin in the colon [24,25] therefore; we also assessed the expression of Muc2 in Itgb2 mut and WT mice ( Fig. 6e-h). We observed fewer Muc2 positive cells in the colon of the Itgb2 mut mice p.i. compared with WT (Fig. 6g, h, j **p < 0.01) suggesting that Itgb2 mut mice did not have an infection-induced increase in the goblet cells and Muc2 secretion. However, evaluation of the ratio of goblet to epithelial cells showed there was a similar goblet to epithelial cells ratio between WT and Itgb2 mut colons during T. muris infection (Fig. 6k).
Collectively our data show that in the context of a Th2 response in the colon, β 2 integrin is involved in DC recruitment to the site of infection but not trafficking of DCs to the lymph nodes and establishment of Th2 immunity and subsequent resistance to infection.

Discussion
Over the last 10 years, research using models such as transgenic knockout models have provided major progress in understanding the role of integrins. However, questions remain regarding the role of integrins in leukocyte migration and whether there is an absolute requirement for them for effective DC migration during infection. DCs were shown to migrate interstitially within the skin and lymph node without the need for integrins under steady-state conditions [14]. Furthermore, β 2 integrin was found to restrict DC migration to lymph nodes during homeostasis [8]. In agreement with these observations, we observed no changes in the frequency of DCs in the MLN in both wild type and Itgb2mut mice before infection suggesting no role in steadystate trafficking to lymph nodes. Furthermore, although we saw trend for a reduction, we found no significant changes between the proportion of DC subsets in the MLN in WT and Itgb2 mut mice post-infection suggesting that DC migration to the MLN in infection was also not dependent on functional β 2 integrin. CCR7 plays a critical role in DC migration to the MLN in the gut and skin during steady-state and inflammation [15,26], thus chemokine signaling may be more important for this directional movement of DCs to the lymph nodes. Future studies could address the relative contributions of β2 integrin and chemokine signaling in recruitment of DCs to lymph nodes. This paper has focused on studying the role of β 2 integrin in DC migration to the site of infection and subsequently the efficiency of an immune response to infection. Observing DC and macrophage migration to the colon, the scenario was different from that seen in the MLN. Flow cytometry and immunostaining data showed a significant decrease in DCs and macrophages in the gut in response to infection in the absence of functional β 2 integrin. This data suggests DC and macrophage migration to the site of infection is impaired in the absence of functional β 2 integrin. One possibility for this observation might be that cells are not able to enter the tissue and instead accumulate in lymphoid organs such as the spleen. Splenomegaly was observed in all Itgb2 mut mice post-infection but MLNs were comparable with WT. Another possibility is that the reduction in cell number was due to a reduction of DC and macrophage precursors to the tissue site. Pre-DCs are important for the generation of cDCs during steady-state conditions [27][28][29]. In contrast, in inflammation, inflammatory DCs are thought to be largely derived from monocytes [30]. Monocytes also play a critical role in the development of inflammatory macrophages [29][30][31]. Low β 2 expression is associated with monocytopenia in the peripheral blood and bone marrow [32]. This monocytopenia had impacts on the accumulation of monocyte-derived macrophages and monocyte-derived DCs in the lungs early after infection, suggesting that β 2 plays a role in regulating monocyte hematopoiesis and is needed for transendothelial migration of monocytes [32]. The observation that both macrophages and dendritic cells numbers were reduced in inflammation but not in steady-state does suggest a role for β 2 integrin in promoting monocyte recruitment to the colon and/or extravasation of monocyte precursors to during infection that in turn impacts on the development of inflammatory dendritic cells and macrophages. β 2 integrin has also been reported to mediate macrophage retention at inflammatory sites [11], therefore it may be that monocyte recruitment is unaffected but the macrophages and DCs are not retained at the site of infection which will be interesting to address in future studies. Similar to our observations of unaltered DC migration to lymph nodes, other infection studies have also observed that DC migration to the lymph nodes was not affected by the lack of β 2 integrin [33,34], and it is believed that this process is CCR7 dependent [15]. There are both residents and recruited populations of dendritic cells in the lymph nodes and through our flow cytometry panel suggested no clear differences in overall DC numbers between WT and mutant mice in the nodes, the possibility is that the balance of recruited versus residents cells may be altered. However, T cell responses were not diminished implying that sufficient DC had been trafficked to provoke immune responses. It may be that more acute models of inflammation coupled with intra-vital imaging or the use of approaches such as mesenteric lymphadenectomy and thoracic duct cannulation to identify intestinal migratory DC subsets could better resolve the question of recruitment of DCs to the nodes [35]. It will be also interesting to further assess the contribution of β 2 in monocyte recruitment and cell retention in the gut and the development of cell-specific knockouts would be invaluable for this purpose for both in vivo and in vitro studies. Such tools could also enable further functional assessment on integrin functionality in colonic dendritic cells.
In the context of gut infection, early DC recruitment to the site of infection has been associated with resistance to infection, which is thought to be due to DCs receiving the appropriate maturation signals in a timely fashion that enables them to prime the appropriate T cell response. Delay of DC maturation will affect DC priming T cells in the MLN, which may result in a delay in the development of the T cell response [16][17][18]. Therefore, the reduction of DCs in the inflamed gut might be anticipated to impact on subsequent immunity. However, there was no difference in susceptibility to the infection to T. muris in WT and Itgb2 mut mice and there was no clear reduction in numbers between DCs in the nodes between strains. Whereas DCs appear to be critical for Th1 development [36], several papers have suggested that DCs are not essential for Th2 immunity and that other cells such as basophils or ILC2s are important for resistance to Th2 infections [37][38][39]. Indeed, basophils have been shown to play a protective role by inducing strong Th2 immunity during T. muris infection [40,41]. Thus, the impact of this reduced DC recruitment on the gut in this infection may not markedly impact immunity in the context of a Th2 immune response however it would be interesting to assess in future work if this is true in the context of small intestinal infection or Th1 responses. β 2 integrin is thought to play a role in T cell function. Integrins on DCs and other APCs regulate the T cell response [42][43][44]. β 2 integrin was shown to be essential for T cell migration to the MLN but dispensable for T cell priming by DCs [45,46]. WT and Itgb2 mut mice expelled T. muris worms equally and Th2 associated cytokine responses were detected in WT and Itgb2 mut MLN. This data would appear to confirm that β 2 integrin on DCs was not needed for T cell priming. As DCs lacking functional β 2 integrin are fully capable of priming Tcells, and β 2 expression on DCs can be inhibitory for T cell activation [46,47]. We propose that β 2 integrin might have a role in modulating the development of Th2 responses. We did see slightly higher levels of Th2 associated cytokines in our infection model in the absence of β 2 integrin. One possible mechanism may be that responses are less attenuated in the absence of β 2 integrin as the integrin has been associated with the induction and modulation of Treg responses [13,48]. In future studies therefore it may be interesting to assess the role of β 2 integrin in the development of Treg populations in the context of gut infection and inflammation. Additionally, although it was not significant, IL-17A production increased in the Itgb2 mut MLN compared to the WT. IL-17 is increased in CD11b deficient mice, which induced Th17 cell differentiation and prevented the mice developing oral tolerance [49]. The role of β 2 in regulating IL-17 has been suggested in other studies [43,50]. TGF-β is also involved in Th17 differentiation and levels were similar in WT and Itgb2 mut at D19 p.i. and thus the impact on Th17 cells in this model might be limited. It would also be interesting to assess Th1 and Th2 polarisation more fully in other models of infection and inflammation as C57BL/6 mice are resistant to T. muris infection and the changes in T cell cytokines and antibody had no impact on resistance to infection or gut pathology. β 2 integrin was found to be essential in regulating the immune response in the skin and lymph node during skin inflammation and dysfunctional β 2 was associated with increased Th1 responses [43]. The use of cell-specific knockout strains to assess both DC function in T cell priming and T cell function would be invaluable in further dissecting mechanisms for future study.
A key difference between the β 2 integrin deficient mice and WT was in hyperplasia of goblet cells. PAS and Muc2 staining of Itgb2 mut mice revealed that there was no infection-induced hyperplasia in the mutant mice and no increase in Muc2 levels at D19 p.i. compared with WT. Goblet cell hyperplasia is associated with immune resistance against nematode infection [24,25,51]. Th2 cells induce IL-4, IL-9, and IL-13, which promote epithelial cell mucus production, which protects the host's epithelial barrier and promotes worm expulsion [52,53]. Although IL-9 and IL-13 production was increased in Itgb2 mut MLN, mucus production did not appear to be enhanced compared with WT however worms were still expelled. Furthermore, the ratio of goblet cells to epithelial cells was similar between strains. Thus, it may be the levels of Th2 associated cytokines were insufficient to alter mucus production but it raises the interesting possibility of a link between β 2 integrin and the mucus layer. Data does suggest the intriguing possibility that β 2 plays a role in the function and proliferation of goblet epithelial cells, integrins such as β 1 have been found to control the fate and function of cells by controlling their proliferation and differentiation [54]. Intestinal goblet cells can transport luminal antigens to CD103 + DCs [55] and therefore a lack of goblet cell hyperplasia, along with dysfunctional DCs may impact DC antigen acquisition that would impede the immune response. However, if this were the case, worm burden data and pathology results would be impacted and this was not the case.
In summary, our findings highlighted the role of β 2 integrins in migration to the tissue sites during a Th2 driven infection adding to the body of literature on the role of integrins in cell migration and function.

Methods and materials
Mice C57BL/6 Itgb2 tm1Bay mutant mice referred to (Itgb2 mut ) carry a mutation in the cytoplasmic tail of CD18 and were described previously [19]. Mice were bred as heterozygous pairs and were fed irradiated food and water. All mice were kept in well-ventilated cages, and had free access to water and standard chow and were used at 8-12 weeks of age. Mice were maintained on a 12 h lightdark cycle at 21-23°C in the Biological Services Unit (BSU), University of Manchester. All animal experiments and procedures were approved by the University of Manchester Animal Welfare and Ethical Review Board and performed by the Home Office guidelines scientific procedures Act 1986 (revised 2013).

Trichuris muris infection
Itgb2 mut and wild type littermate controls were infected with approximately 200 embryonated T. muris eggs by oral gavage. T. muris eggs were prepared and maintained as described [56]. Mice were sacrificed at days 0, 5, and 19 post-infection We selected three time points as the focus for study based on previous work in the model-Day 0, D5, and D19 [17,57] as these are timepoints that coincide with peak dendritic cell recruitment to the colon [17] (D5) and colonic inflammation and T cell responses (D19) [41,57,58]. Mice were selected for experimental use per ARRIVE guidelines. Briefly, mice to be infected were randomised from 3 to 8 litters per experiment using a spreadsheet, the sample size was selected based upon previous work and all experiments were blinded.
All experiments were performed on littermates to control for variation in the microbiome and environment and each experiment we randomised mice from 3 to 8 litters. However, the use of littermate controls meant there was some variance in group sizes between experiments with at least 4 mice/ experiment. All experiments except flow cytometry were performed on at least two sets of experiments.

T. muris worm burden count
The numbers of T. muris worms were counted in the caecum post-infection (p.i). The worms were counted in the fecal matter as well as caecum tissue as described previously [56].

Isolation of cells from the colon
Colonic cells were harvested at autopsy and digested in RPMI media containing 5% L-glutamine, 5% streptomycin, 10% fetal bovine serum (Sigma Aldrich, Dorset, UK), dispase (0.5 mg/ml), and collagenase type VIII (100 U/ml) from Clostridium histolyticum (Sigma-Aldrich). Cells were ten incubated in a rotator under gentle agitation at 37°C for 2 h. Digested tissue was forced through a 70 μm cell strainer (ThermoFisher Scientific, Cheshire, UK), the collected suspension was then centrifuged at 900 g for 5 min and re-suspended in 10 ml of 40% percoll overlaid onto 5 ml 80% percoll solution (GE Healthcare, Buckinghamshire, UK) and centrifuged at 1000 g for 20 min. The cells at the gradient interface were carefully collected, washed in RPMI, centrifuged at 500rcf for 5 min, and re-suspended at a density of 2 × 10 6 cells/ 100 μl in FACS buffer (PBS containing 5% bovine serum albumin (BSA) and 0.02% Sodium Azide (NaN3), all Sigma Aldrich).

Stimulation of MLN cells
MLN from mice infected with T. muris was taken at post mortem and the MLN cells prepared as described previously [17], and 5 × 10 6 MLN cells/ml were plated in a 96 well culture plate and stimulated with T. muris parasite excretory-secretory antigen (E/S, 50 μg/ml, provided by Professor Else, University of Manchester) and incubated at 37°C, 5% CO 2 for 48 h. At 48 h the cells were centrifuged at 250 g for 5 min, the supernatants collected and stored at − 20°C until analysed by cytometric bead array (CBA).
Single stain controls were prepared using beads or spleen cells, negative controls were prepared using unstained cells. Cells were acquired by flow cytometry on the BD LSRII (BD) and the data were analyzed and visualized using FlowJo™ flow cytometry software (Ashland, OR: Becton, Dickinson and Company; 2019, Berkshire, UK; https://www.flowjo.com/).

Enzyme-linked immunosorbent assay (ELISA)
T. muris specific IgG1 and IgG2a antibody responses were investigated in the serum of day 19 infected mice. ELISA plates were coated with 5 μg/ml T. muris ES antigen diluted in carbonate bicarbonate buffer (15 mM Na 2 CO 3 , 35 mM NaHCO 3 adjusted to pH 9.6) and incubated overnight at 4°C. Plates were washed with PBS Tween (PBS containing 0.05% Tween20, Sigma-Aldrich) and blocked with 3% BSA in PBS Tween. Serum was diluted 1:20-1:2560 in PBS Tween, added to the plate at 50 μl/well, and incubated for 1 h at 37°C. Plates were washed and incubated with 50 μl/well of biotinylated rat anti-mouse IgG1 (BD Biosciences, Oxford, UK) or IgG2a (BD Biosciences) for 1 h at room temperature. After washing, plates were incubated with 75 μl/well streptavidin β peroxidase (Roche Diagnostics GmbH, Germany) for 1 h at room temperature. Plates were then washed and developed with 100 μl/well of 3,3′, 5,5′ tetramethylbenzidine (Ultra TMB ELISA substrate, Thermo Fisher Scientific). The color development was stopped by adding 100 μl/well of 2 N sulphuric acid (R&Dsystems, Abingdon, UK). Absorbance was read using a Dynex MRX11 plate reader (Dynex Technologies, West Sussex, UK) at 405 nm with a reference of 490 nm.

Histology
Distal colon snips (~3 mm in length) were fixed in NBF (4% neutral buffered formalin, Sigma-Aldrich) for 24 h or in Carnoy's solution in methanol-Carnoy's solution to preserve mucus integrity [59]. Samples were left in Carnoys for 1-7 days. The fixed samples were placed in histology cassettes and transferred into 70% ethanol for processing using a Microm STP 120 Tissue Processor (Microm International, Walldorf, Germany). Briefly, tissues were placed in 70% ethanol for 15 min, 90% ethanol for 30 min, 95% ethanol for 30 min, two changes of 100% ethanol for 60 min, 100% ethanol for 20 min, xylene for 15 min, two changes of xylene for 30 min (all at 40°C), and fribowax pastillated wax (BD) for 1 h at 60°C. The processed samples were then mounted in wax blocks using a Micro EC-350 embedding system (Microm International) and 5 μm serial-sections were cut using a Microm HM325 microtome (Microm International). The sections were floated on warm water and transferred to glass slides and dried for staining.

Hematoxylin and eosin staining
The formalin-fixed tissue sections were dewaxed in Citroclear (HD supplies, Aylesbury, UK) for 15 min and rehydrated through absolute alcohol to 70% alcohol (1 min in each concentration of alcohol). The sections were briefly washed in distilled water and stained in Harris Haematoxylin solution (Sigma-Aldrich) for 4 min. After staining, the sections were washed in running tap water for 1 min followed by differentiation in 1% acid alcohol for 10 s. The sections went through washing and bluing in running tap water for 5 min before eosin staining. After staining using eosin solution (Sigma-Aldrich) for 30 s, the sections were washed in tap water for 1 min. Dehydration was performed whereby the sections were taken through changes of 70% alcohol through to absolute alcohol. Before mounting the sections were immersed in Citroclear (HD supplies) for 30 s. The sections were finally mounted with DEPEX mounting media (Thermo Fischer Scientific, Hemel, UK) and sealed.
Slides were viewed using a Nikon Eclipse E400 microscope (Nikon, Japan) equipped with lenses at × 20 and × 40 magnification. The average of villus heights was determined by measuring the length of 10 to 15 villi from three different fields of view per specimen using NIH Image software (ImageJ, version 1.45 s, https://imagej. nih.gov/ij/docs/index.html). All slides were analysed in a blinded fashion.

Goblet cell staining
The mucins in goblet cells were stained with 1% alcian blue (Sigma-Aldrich) in 3% acetic acid (Sigma-Aldrich, pH 2.5) for 5 min, washed in distilled water, and treated with 1% periodic acid for 5 min (Sigma-Aldrich). Sections were washed in distilled water, then tap water for 5 min and rinsed in distilled water. Sections were then treated with Schiff's reagent (Sigma-Aldrich) for 15mins. Slides were washed again as before being counterstained with Mayer's hematoxylin (Sigma-Aldrich). Slides were washed in tap water, dehydrated (as described in section 2.9), mounted and coverslipped using DEPEX mounting media (BDH Laboratory Supplies). The slides were scanned by the panoramic viewer system and the goblet cells were enumerated in 20 randomly selected crypts/ section and scored blinded.

Immunofluorescence
Colon fragments from the proximal colon were snapfrozen in optimal cutting compound (OCT, Raymond A Lamb, Eastbourne, UK) and stored at − 80°C for at least 24 h. The OCT embedded tissue was cut into sections at 4-6 μm thickness using a Leica CM-1100 cryostat (Leica Biosystems, Linford Wood, UK) placed onto charged slides (Thermo Scientific) and stored at − 80°C until assayed.
Cryo-preserved tissue sections on slides were fixed using 4% paraformaldehyde solution for 5 min followed by washing in washing buffer (PBS with 0.05% BSA) for 5 min. The tissue sections were blocked using tryamide blocking reagent (Perkin Elmer, Cambridge, UK) at room temperature for 30 min, washed three times in washing buffer, blocked again using avidin/biotin blocking kit (Invitrogen) at room temperature for 15 min each, washed three times in washing buffer, followed by incubation with anti-CD103 (diluted in TNB buffer, 10 μg/ml) for 1 h at room temperature or overnight at 4°C. The sections were washed thoroughly in washing buffer three times and goat anti-rat IgG (10 μg/ml, Invitrogen) was added for 1 h at room temperature. After washing the sections were incubated with fluorescent FITC Tyramide Amplification reagent for 5 min in the dark at room temperature. After washing three times, the sections were carefully dried and the CD11c-biotin antibody (1 μg/ml), (eBioscience, Hatfield, UK) added to sections and incubated for 1 h at room temperature. After washing, streptavidin-horseradish peroxidase (HRP, 1.5 μg/ml), (Invitrogen, Cheshire, UK) was applied and the sections incubated for 30 min at room temperature in the dark. After washing thoroughly, the sections were incubated with cyanine3 Tyramide Amplification System (Perkin Elmer) for 5 min at room temperature in the dark. After a final wash, the tissue sections were mounted using a mounting media containing DAPI (Vectashield, Vector Laboratories, Peterborough, UK) and then sealed until viewing. Slides were analysed under an Olympus BX51 fluorescence microscope equipped with lenses at × 20 magnification (Olympus, Japan). Cells were counted per field of view in a blind and randomised order. Three fields/views were counted per section. Control sections were prepared with only secondary antibodies but no primary antibody.

Statistics and mathematical analysis
Statistical analysis was performed using Mann-Whitney U test or Kruskal-Wallis as appropriate. The P-values of < 0.05 were considered significant. All statistical analyses were carried out using Graph Pad Prism for mac, version 6 and 7 (La Jolla, CA). Data are expressed as mean ± SEM.
The data that support the findings of this study are available from the corresponding author upon reasonable request.