Symbiosis of the millipede parasitic nematodes Rhigonematoidea and Thelastomatoidea with evolutionary different origins

How various host–parasite combinations have been established is an important question in evolutionary biology. We have previously described two nematode species, Rhigonema naylae and Travassosinema claudiae, which are parasites of the xystodesmid millipede Parafontaria laminata in Aichi Prefecture, Japan. Rhigonema naylae belongs to the superfamily Rhigonematoidea, which exclusively consists of parasites of millipedes. T. claudiae belongs to the superfamily Thelastomatoidea, which includes a wide variety of species that parasitize many invertebrates. These nematodes were isolated together with a high prevalence; however, the phylogenetic, evolutionary, and ecological relationships between these two parasitic nematodes and between hosts and parasites are not well known. We collected nine species (11 isolates) of xystodesmid millipedes from seven locations in Japan, and found that all species were co-infected with the parasitic nematodes Rhigonematoidea spp. and Thelastomatoidea spp. We found that the infection prevalence and population densities of Rhigonematoidea spp. were higher than those of Thelastomatoidea spp. However, the population densities of Rhigonematoidea spp. were not negatively affected by co-infection with Thelastomatoidea spp., suggesting that these parasites are not competitive. We also found a positive correlation between the prevalence of parasitic nematodes and host body size. In Rhigonematoidea spp., combinations of parasitic nematode groups and host genera seem to be fixed, suggesting the evolution of a more specialized interaction between Rhigonematoidea spp. and their host. On the other hand, host preference of Thelastomatoidea spp. was not specific to any millipede species, indicating a non-intimate interaction between these parasites and their hosts. The two nematode superfamilies, Rhigonematoidea and Thelastomatoidea, have phylogenetically distinct origins, and might have acquired xystodesmid millipede parasitism independently. Currently, the two nematodes co-parasitize millipedes without any clear negative impact on each other or the host millipedes. Our study provides an example of balanced complex symbioses among parasitic nematodes and between parasitic nematodes and host millipedes, which have been established over a long evolutionary history.

Here, we reveal that the two parasitic nematodes, Rhigonematoidea spp. and Thelastomatoidea spp., have different evolutionary origins but co-infect the xystodesmid millipedes without clear negative impacts between each parasitic nematode and host millipedes.

Two parasitic nematodes R. naylae and T. claudiae isolated from the two millipedes Parafontaria laminata CU and Parafontaria tonominea species complex CU
We isolated two parasitic nematodes, R. naylae and T. claudiae, from the xystodesmid millipede, P. laminata, in the Chubu University campus in Aichi Prefecture, Japan (Table 1, Fig. 1). Hereafter, this millipede species is referred to as P. laminata CU. Rhigonema naylae has a large body size, short pharynx, round head, and short tail. The body size of T. claudiae is smaller than that of R. naylae; the females have a typical umbrella-like head and long tail, and the males have a tiny body with a spicule ( Fig. 2) [45,46]. No clear sexual dimorphism was detected in either nematode species during the juvenile stage; however, it was possible to distinguish the two species at any developmental stage.
A total of 113 P. laminata CU millipedes were captured from April 2018 to July 2019, and parasitic nematode infections were examined. The total infection prevalence (counted as present when at least one individual was detected from any developmental stage) of R. naylae and T. claudiae was 31.0% and 27.4%, respectively, and co-infection prevalence (infected by the two nematode species together) was 10.6% ( Table 2). The density (number of males, females, and juveniles of nematodes in individual hosts) and infection percentage at each stage are also presented in Table 2. We found 11.5% of males and 12.4% of females of R. naylae, and 1.8% of males and 3.5% of females of T. claudiae ( Table 2). All adult male and female nematodes appeared healthy, and all females matured, and many eggs were observed in the uteri.
Another xystodesmid millipede in the same area was also infected with the two parasitic nematodes. From the body shape and male genitalia, this millipede was determined to be a member of the P. tonominea species complex (Additional file 1: Figure S1) [67]. Hereafter, this millipede species is referred to as P. tonominea species complex CU. A total of 82 P. tonominea species complex CU millipedes were captured from May 2018 to July 2019, and parasitic nematode infections were examined. The infection prevalence of both parasitic nematodes in the P. tonominea species complex CU was higher than that in P. laminata. The total infection prevalence (counted as present when at least one individual was detected from any developmental stage) of R. naylae and T. claudiae was 96% and 72%, respectively, and the co-infection prevalence was 72% (Table 2). A total of 89% of males and 87% of females of R. naylae, and 52% of males and 17% of females of T. claudiae were detected ( Table 2). All females of both nematode species in the P. tonominea species complex CU were mature, and many eggs were present in the uteri. From these results, we deduced that both parasitic nematodes, R. naylae and T. claudiae, were able to use the two millipedes as hosts; however, the infection prevalence and density of T. claudiae were lower than those of R. naylae.

Population of R. naylae was not negatively affected by co-infection with T. claudiae
We analyzed whether the two parasitic nematodes, R. naylae and T. claudiae, affected each other when they coinfected the host millipede P. tonominea species complex CU. There were three infection patterns: (1) co-infection with the two parasitic nematodes (N = 59), (2) infection with only R. naylae (N = 20), and (3) no nematode infection (N = 3). We did not observe any millipede host P. tonominea species complex CU infected with T. claudiae alone. We studied the infection prevalence % and mean density (mean number of nematodes per infected host) of male, female, and juvenile R. naylae in: (1) all the hosts (N = 82), (2) hosts infected with only R. naylae (N = 20), and (3) hosts co-infected with R. naylae and T. claudiae (N = 59). The infection prevalence of R. naylae juveniles in hosts co-infected with T. claudiae was significantly higher than that in hosts infected with only R. naylae, but there were no differences in the prevalence of R. naylae adults (Fig. 3A). In addition, the mean densities of R. naylae females and juveniles were significantly higher when co-infected with T. claudiae (Fig. 3A). The effects of host body size on these infection conditions was not significantly different (Additional file 2: Figure S2). Thus, coinfection with T. claudiae did not affect the population of R. naylae in the alimentary tract of the P. tonominea species complex CU.
We also checked the effects of seasonal differences (spring vs. summer) on the prevalence and densities of the two parasitic nematodes in the host millipede P. tonominea species complex CU. The infection prevalence of R. naylae at all stages was high, and there was no significant difference between spring (91%, N = 33) and summer (96%, N = 49) (Fig. 3B). The density of R. naylae juveniles was significantly higher during summer (Fig. 3B). As indicated previously, the infection prevalence of T. claudiae was lower than that of R. naylae; however, female prevalence in summer was higher (86%, N = 42), and those of the females and juveniles of T. claudiae significantly increased during summer (Fig. 3C). The density of T. claudiae females was also higher during summer (Fig. 3C). The effects of host body size on these seasonal conditions were not significantly different (Additional file 2: Figure S2). Thus, while the density and prevalence of R. naylae remained high year-round, those of T. claudiae were strongly affected by seasonal changes.

Two nematodes commonly co-infected in Parafontaria millipedes
We also collected five Parafontaria species from three other locations in Gifu Prefecture (Fig. 1, Table 1). From morphological observations, one was P. laminata Kinka (collected from Mt Kinka, Gifu City), and belonged to the same species as P. laminata CU; another was P. longa Embara (collected from Embara, Yamagata City); and the three other millipedes were different species that were tentatively classified as members of the P. tonominea species complex (Additional file 1: Figure S1). Similar to the P. tonominea species complex CU and P. laminata CU, these five Parafontaria millipedes tended to be infected with the two parasitic nematodes, R. naylae and T. claudiae. All D2D3 LSU sequences within the species were almost identical (Additional files 3, 4: Tables S1 and S2). Infection prevalence and mean density of parasitic nematode males, females, and juveniles are shown in Fig. 4 and Additional file 5: Table S3. The characteristics of the two nematodes in the Parafontaria species were similar, and the infection prevalence of R. naylae was Fig. 2 Two parasitic nematodes, Rhigonema naylae and Travassosinema claudiae parasites of the xystodesmid millipede Parafontaria laminata CU and P. tonominea species complex CU. Nomarski differential interference construct images of adult female and male. Body sizes (Average ± S.D.) are adapted from [45,46] higher than that of T. claudiae; however, all adult male and female nematodes matured and reproduced. In addition to the two parasitic nematodes, unknown species were isolated from the four host species. Two individuals of P. tonominea species complex Kinka (2/43, 4.5%), two of P. laminata Kinka (2/35, 5.7%), eight of P. tonominea species complex Embara (8/20, 40%), and one of seven P. longa Embara (1/7, 14%) were infected. These nematodes were morphologically distinguishable from R. naylae and T. claudiae. D2D3 LSU sequencing data from the nematode isolated from the P. tonominea species complex Embara showed that it had a similar sequence to Cephalobellus brevicaudatus [14], MF668725.1 with 92% identity (671/727 bp). Combined with morphological observations, this nematode is an undescribed species, and we temporarily named it Cephalobellus sp.1 (Table 1). We could not identify the other unknown nematodes because of the small number of specimens.

Parasitic nematodes in Riukiaria millipedes
To determine the infection patterns of parasitic nematodes in other xystodesmid millipedes, we collected Riukiaria spp. from Kyushu Island. Three species (four isolates) were collected from three locations in Kyushu (Table 1, Additional file 1: Figure S1). All of the species tended to be infected with the three parasitic nematodes, Rhigonematoidea sp. 1, T. claudiae, and Thelastomatidae spp. (Table 1). From the D2D3 LSU sequencing data, Thelastomatidae sp. 1 and sp. 2 and Rhigonematoidea sp.1 were undescribed species (Additional files 3, 6: Error bars indicate confidence interval with 95% confidence limit. *p < 0.05, **p < 0.005, Fisher's exact test for comparing prevalence, and Bootstrap 2-sample t-test for comparing mean densities Tables S1 and S4). Surprisingly, T. claudiae, the species that was isolated from Parafontaria millipedes, was also found in all Riukiaria millipedes in our samples (Table 1, Additional file 4: Table S2). Thelastomatidae sp. 1 and Thelastomatidae sp. 2 were combined and referred to as Thelastomatidae spp.
Similar to R. naylae in Parafontaria millipedes, the infection prevalence of male, female, and juvenile Rhigonematoidea sp.1 was high (67-100%), whereas the infection prevalence of T. claudiae and Thelastomatidae spp. was lower (0-87%) (Additional file 7: Table S5). In addition, males and juveniles of T. claudiae and Thelastomatidae spp. in Riukiaria hosts were detected only in a few cases. Infection data of only nematode females were selected and are shown in Fig. 5. Since all of the females were mature, and many eggs in their uteri were visible, we concluded that all of these parasitic nematodes used Riukiaria millipedes as hosts and could reproduce.
We then analyzed whether the two parasitic nematodes, T. claudiae and Thelastomatidae spp., affect each other when co-infecting host millipedes. The mean densities of T. claudiae adult females in all Riukiaria spp. were combined and calculated for two infection patterns: (1) infected with only T. claudiae, and (2) co-infected with T. claudiae and Thelastomatidae spp. In addition, the mean densities of Thelastomatidae spp. adult females in Riukiaria spp. were calculated for two infection patterns: (3) infected with only Thelastomatidae spp., and  Table 1 Fig. 5 Infection prevalence (%) (orange dot, right Y-axis) and mean density (the mean number of nematodes per infected host) (blue dot, left Y-axis) of the females of the parasitic nematodes. Error bars indicate confidence intervals with 95% confidence limit (4) co-infected with T. claudiae and Thelastomatidae spp. (Fig. 6). Since 99% of the Riukiaria millipedes (N = 97 of 98) were infected with Rhigonematoidea sp.1, we could not examine the effect of Rhigonematoidea sp.1 on the densities of Thelastomatidae spp. and T. claudiae. The densities of both parasitic nematodes in co-infected hosts were significantly higher than those in single infections (Fig. 6).
Furthermore, we found that the mean densities of Rhigonematoidea sp.1 adult females were significantly higher when the two parasitic nematodes Thelastomatidae spp. and T. claudiae were co-infected in the host at the same time, compared with those with only Thelastomatidae spp. or T. claudiae (Fig. 7A). Since the mean body size of Riukiaria spp. was larger when co-infected with the two parasitic nematodes Thelastomatidae spp. and T. claudiae (Fig. 7B), the prevalence of these two parasites was positively correlated with host body size. Thus, the number of parasites in millipede hosts increased with increasing host size, suggesting that these nematodes did not compete and eliminate each other.

Parasitic nematodes in xystodesmid millipedes with phylogenetically different origins
We used D2D3 LSU rDNA genes selected from representatives of the four infraorders Oxyuridomorpha, Rhigonematomorpha, Gnathostomatomorpha, Spirurinomorpha, and the two families Dracunculoidea and Camallanoidea (Additional file 8: Table S6). A phylogenetic tree covering the suborder Spirurina was constructed that supported the taxonomic relationship previously reported [37,43], these infraorders were clearly separated and clustered (Fig. 8A). Rhigonematoidea was clustered with Cosmocercoidea and Ransomnematoidea. As Travassosinematidae appeared to be close to Thelastomatidae, and both are classified in Thelastomatoidea (Fig. 8A), the xystodesmid millipedes examined in this study tended to be infected with parasitic nematodes belonging to these two infraorders.
In the maximum likelihood (ML) tree, Rhigonematoidea sp. 1 was clearly separated from the Rhigonematidae cluster but could be within Rhigonematoidea (Fig. 8B). All parasitic nematodes in  Rhigonematomorpha are believed to be millipede parasites, but Cosmocercoidea (reptile and amphibian parasites) were included in Rhigonematomorpha in our phylogenetic analysis (Fig. 8B). The parasitic nematodes T. claudiae, Cephalobellus sp. 1, Thelastomatidae sp.

Discussion
Two nematode species, R. naylae and Rhigonematoidea sp. 1 in the superfamily Rhigonematoidea, were isolated from millipede hosts Parafontaria spp. and Riukiaria spp., respectively, with high infection prevalence (Table 1). Phylogenetic analysis with rRNA SSU, rRNA LSU, and mitochondrial DNA indicated that Rhigonematomorpha is not monophyletic, but is nested within Ascaridomorpha [36,43]. The superfamily Cosmocercoidea was also positioned within the Rhigonematomorpha in our analysis (Fig. 8B). This superfamily contains reptile and amphibian parasitic nematodes, and is classified within Ascaridomorpha [8,9,50]. Thus, further studies are required on the taxonomy of these groups; however, these infraorders are clearly closely related phylogenetically. In addition, the infraorder Rhigonematomorpha is composed of Rhigonematoidea and Ransomnematoidea and contains exclusively millipede parasites [19,33]. We also showed that the combination of parasitic nematode groups and host genera seems to be specifically fixed. For example, Riukiaria hosts were exclusively infected with Rhigonematoidea sp. 1, whereas Parafontaria hosts were exclusively infected with R. naylae (Fig. 8B). Combining these data, we predicted the appearance of Rhigonematoidea, which might have divided from a common ancestor with Ascaridomorpha and acquired millipede parasitism at an earlier period before millipedes began to inhabit terrestrial environments.
The infection cycle of Rhigonematoidea is not well known; however, nematode eggs laid by adult females are probably deposited within their host feces, similar to parasitic nematodes in Oxyuridomorpha. When eggs were collected from the adult females of R. naylae and incubated in phosphate buffered saline (PBS) buffer, they began to develop, and larvae hatched (data not shown). These parasites might have a special mechanism that specifically infects only millipedes. For example, larvae are only attracted to specific hosts. In addition, autoinfection might occur similar to that in human parasitic nematode Strongyloides stercoralis [73], resulting in repeated generations occurring in the same host individual, leading to high infection prevalence throughout the season (Fig. 3B).
Four nematode species in Thelastomatoidea, T. claudiae, Cephalobellus sp. 1, Thelastomatidae sp. 1, and Thelastomatidae sp. 2 were isolated from xystodesmid millipedes ( Table 1). Cephalobellus sp. 1 was only found in the P. tonominea species complex Embara, and Thelastomatidae sp. 1 and Thelastomatidae sp. 2 were only found in Riukiaria spp. Interestingly, R. naylae infected all of the millipedes. Cephalobellus is a member of the family Thelastomatidae and is found in many invertebrate hosts, including mole crickets, crane flies, white grubs, cockroaches, and millipedes [14,29,60]. In addition, we isolated nematode genera from the mole cricket Gryllotalpa orientalis, white grub Protaetia orientalis submarumorea, and pill millipedes Hyleoglomeris japonica (data not shown). Travassosinema is currently one of three genera (together with Indiana and Pulchrocephala) in the family Travassosinematidae [1,28]. Although reported mainly in millipedes, it has also been found in other invertebrate hosts, including the larvae of a scarabaeid beetle, wood-burrowing cockroach, and earthworms [1,30,31,34,46,58,63]. Because almost all studies thus far have been nematode isolation records and taxonomical descriptions, the host-parasite relationship for each species has not yet been clarified, but the broad host range is a clear characteristic of these genera.
The family Thelastomatidae has also been isolated from many invertebrates; however, overwhelmingly, a large number of species has been found in Blattodea hosts [2,52,53,64]. From our field surveys and previous studies, the host specificity of nematodes belonging to the family Thelastomatidae appeared high [13,47,48,52,53,64]. Yet, the same nematode species have been isolated from different cockroach species [35,54,62]. We showed, experimentally, that Leidynema appendiculatum, a thelastomatid parasitic nematode, was capable of infecting five cockroach species from three families in two suborders [54]. While ecological interactions between host and parasitic nematodes determine the host range, a broad host range might still be possible in Thelastomatoidea.
Parasitic nematodes in Thelastomatoidea are thought to share a simple infection cycle; nematode eggs are laid by adult females, deposited within their host's feces, and then released outside the host's body; ingestion of the eggs by new host individuals leads to infection [3,18,53]. When eggs were collected from adult females of T. claudiae and incubated in a PBS buffer, they developed until the infection stage but never hatched (data not shown). Such characteristics of embryogenesis are shared with the cockroach-parasitic nematode family Thelastomatidae. Because it is necessary for the eggs of T. claudiae to exit the host body once to generate the next developmental stage, infection prevalence might have been lower (Figs. 3A, 4, 5) and affected by the season (Fig. 3C) when compared with those of Rhigonematoidea. In addition, T. claudiae has a population structure similar to that of the cockroach-parasitic nematodes, with one adult male and a few adult females being present in the host [52,54,74]. These properties are also frequently observed in Thelastomatoidea.
Since infection of the two parasitic nematodes Rhigonematoidea and Thelastomatoidea in xystodesmid millipedes in Japan is universal, as far as we have investigated, the relationship between host millipedes and parasitic nematodes appears not to be pathogenic; rather, it is commensalism (obligatory for nematode, host is not affected) or parasitism (obligatory for nematode, host is inhibited; [15]. Only a few studies have shown the effects of these parasitic nematodes on their invertebrate hosts (e.g., [71,72]), and they have generally been found to be harmless [3,52,54]. The composition of cockroach gut microbiomes is influenced by parasitic nematode species [71,72], suggesting direct or indirect effects of nematodes on the host. As the parasitic nematodes in our study are all obligatory parasites, and culturing methods of their host millipedes have not yet been established, laboratory experiments controlling infection conditions are not possible. In addition, Thelastomatoidea was not eliminated by Rhigonematoidea when co-infected (Figs. 3, 7). From our ecological, parasitological, and phylogenetic studies, we hypothesized that some ancestors of cockroachparasitic nematodes might have changed their host to the Passalidae beetle at an early stage, and become the family Hystrignathidae. Similarly, another ancestor might have changed its host to the millipede and become the family Travassosinematidae and Cephalobellus (Fig. 8C). Their properties might allow Thelastomatoidea nematodes to use the millipede as a host and also to tolerate co-infection with Rhigonematoidea. The exchange of parasitic nematode between hosts living in the same ecological niches could occur (for example, from cockroaches to millipedes), and new parasitic nematodes may have evolved in millipedes after reproductive isolation. This parasitic nematode might also have been isolated from other invertebrate hosts with similar ecology. Speciation of nematodes could also result from genetic isolation, which is largely influenced by their associated animals and plants [44].
Interestingly, all of the millipedes studied in this work tended to be infested with the same species, T. claudiae. These millipedes were mainly sampled from forests where the planted Japanese cedar Cryptomeria japonica was dominant (Table 1). This species might have spread as a result of artificial planting and, because of its low host specificity, T. claudiae could have established relationships with local millipedes. This hypothesis could be clarified using molecular markers, such as the whole mitochondrial genome or ITS regions, which reflect intraspecific polymorphisms.

Conclusions
In this study, we found parasitic nematodes of the two superfamilies Rhigonematoidea and Thelastomatoidea, commonly co-infecting xystodesmid millipedes. Both superfamilies were in the suborder Spirurina, but in apparently different infraorders. We found that the infection prevalence and densitiy of Thelastomatoidea were lower than those of Rhigonematoidea, which reflects the difference in infection mechanism. However, the two nematode superfamilies Rhigonematoidea and Thelastomatoidea were not in a competitive relationship, and co-infected all millipede hosts. Our field study shows an example of the complex symbiosis among parasitic nematodes and between hosts and parasites, established throughout evolution.

Field collection of millipedes
Adult xystodesmid millipedes were collected from seven locations in Japan (Table 1). All millipedes were manually collected and maintained at low temperatures until dissection. Before dissection, all millipedes were first confirmed to be alive, and then the species and sexes were identified following the relevant illustration references [65,67,68].

Millipede dissection and parasitic nematode observation
After body length and sex (male or female) were recorded, millipedes were dissected to determine the presence or absence of parasitic nematodes in the alimentary tract. However, once the host millipede died, the parasitic nematode also died and degraded immediately, which made their identification difficult. All the millipedes used in this experiment were alive when dissected, and the parasitic nematodes were active after being released from the host gut. Nematode species, developmental stages (adult or larvae), sex (male or female), and numbers were recorded (Additional file 9: Table S7). The prevalence % of infected millipedes among all the millipedes examined, mean density (the mean number of nematodes per infected host), and bootstrap confidence interval of each nematode species and stage (adult male, adult female, and larva) were calculated using Quantitative Parasitology 3.0 [10,59].
Pairwise comparison of percent differences (D) within each nematode group (Rhigonematoidea spp., 730 bp; Travassosinematidae spp., 704 bp; Thelastomatidae spp., 676 bp) were performed using the formula D = (M/L) × 100 [16], where M is the number of alignment positions at which the two sequences have a base in common, and L is the total number of alignment positions.

Population analysis of the two parasitic nematodes in P. tonominea species complex CU
To study the effect of co-infection with R. naylae and T. claudiae on the prevalence and densities of the host, P. tonominea species complex CU was classified into three infection patterns: (1) all the hosts, (2) the hosts only infected with R. naylae, or (3) the hosts co-infected with R. naylae and T. claudiae. As no host infected with only T. claudiae was observed in this experiment, we compared the prevalence and density of R. naylae in hosts infected with R. naylae and those co-infected with R. naylae and T. claudiae.
In addition, to study the effects of seasonal differences on the prevalence and density of the two parasitic nematodes in the P. tonominea species complex CU, hosts were classified into two seasonal patterns, collected during spring (from March to June) or summer (July-October) and the prevalence and density of R. naylae and T. claudiae between the two seasons were compared.
Significant differences in nematode infection prevalence and mean densities were calculated using Fisher's exact test and the bootstrap 2-sample t-test, respectively [59]. Differences in host body size in these infection conditions or seasonal conditions were analyzed using Tukey's multiple comparison test followed by Bonferroni correction.
Population analysis of the three parasitic nematodes in Riukiaria spp.
To study the effect of co-infection with the three parasitic nematodes, Rhigonematoidea sp. 1, T. claudiae, and Thelastomatidae spp. on the prevalence and density, all Riukiaria hosts were combined and categorized into the three infection patterns: (1) the host infected with only T. claudiae, (2) the host co-infected with T. claudiae and Thelastomatidae spp., or (3) the host infected with only Thelastomatidae spp. Instead of the high infection prevalence of all stages and sexes of Rhigonematoidea sp. 1, the prevalence of adult males and juveniles of T. claudiae and Thelastomatidae spp. was low, and we used data only from adult females. We compared the densities of T. claudiae and Thelastomatidae spp. in hosts infected with a single or two parasite species.
Furthermore, the densities of Rhigonematoidea sp. 1 females were compared between the three host conditions: (1) hosts infected with only T. claudiae, (2) hosts co-infected with T. claudiae and Thelastomatidae spp., or (3) hosts infected with only Thelastomatidae spp. Significant differences in nematode mean densities were calculated using a bootstrap 2-sample t-test [59]. Differences in host body size under these infection conditions were analyzed using Tukey's multiple comparison test followed by Bonferroni correction. Differences in host body size under these infection conditions were analyzed using Tukey's multiple comparison test followed by Bonferroni correction.

Phylogenetic analysis
For the phylogenetic analysis, D2D3 LSU sequences obtained in this experiment (Table 1) and the data uploaded to the NCBI database and published in the paper were used (Additional file 8: Table S6). ClustalW multiple alignment was conducted using BioEdit version 7.2.6 [26] and sequence alignments were trimmed automatically by trimAI with default settings [11]. A phylogenetic tree of the suborder Spirurina was constructed from evolutionary distances by the neighbor-joining method using Mega 6.0 software and the Tamura-Nei model [66]. Phylogenetic trees of the Rhigonematomorpha and Thelastomatoidea were constructed from evolutionary distances by the maximum likelihood (ML) method using Mega 6.0 software [66] and the Hasegawa-Kishino-Yano model [27]. Phylogenetic robustness was inferred by bootstrap analysis using 1000 iterations [21].
Abbreviations CU: Chubu University as a collection site; D2D3 LSU: D2D3 expansion segment of the large subunit ribosomal RNA gene; SSU: Small subunit ribosomal RNA gene.