First case report of bacteremia caused by Solobacterium moorei in China, and literature review

Abstract

Background

Solobacterium moorei, the only species in the genus Solobacterium, is a Gram-positive, non-spore-forming, strict anaerobic, short to long bacillus. It has rarely been documented to cause blood stream infections. Here we report the first case of bacteremia caused by S.moorei in China.

Case presentation

A 61-year-old male presented to Peking Union Medical College Hospital (Beijing) with thrombotic thrombocytopenic purpura (TTP) and several other underlying diseases. He also had persistent coma accompanied by intermittent convulsions, halitosis, and intermittent fever. Blood cultures taken when the patient had a high fever were positive, with the anaerobic bottle yielding an organism identified as S.moorei by 16S rRNA gene sequencing, whilst the aerobic bottle grew Streptococcus mitis. After replacement of venous pipeline, and empirical use of vancomycin and meropenem, the patient’s body temperature and white blood cell count returned to normal. Unfortunately, the patient died of severe TTP.

Conclusion

This is the first case report of S. moorei isolation from blood stream in China. 16S rRNA gene sequencing is the only method that can identify S. moorei. Blood cultures must be taken before administration of antibiotics, and anaerobic culture should be considered for such rare pathogens in patients with oral diseases and immune deficiency.

Background

Solobacterium moorei (S. moorei) is a member of the indigenous human intestinal microflora, and was first isolated from human feces in 2000 [1]. The new genus Solobacterium, which belonged to the Clostridium cluster XVI, was created after 16S rRNA gene sequence analysis [2]. S.moorei is the only species in the genus, and shows close phylogenetic relationship with Bulleidia extructa, Holdemania filiformis, and Erysipelothrix rhusiopathiae [1, 2]. S.moorei has been reported to cause halitosis [3,4,5], other oral cavity diseases [6,7,8,9] and wound infections [10]. To our knowledge, there are only 4 reports on blood stream infection caused by S.moorei [11,12,13,14]. Herein, we present the first case of S. moorei bacteremia in China.

Case presentation

A 61-year-old man who previously worked in a cattle farm, and had a medical history of hypertension for more than 10 years, hyperlipidemia, type 2 diabetes, rectal cancer treated with 6 rounds of chemotherapy, and brucellosis, presented to a local primary hospital. On April 12,017, he had a fever (38.5 °C), cough, expectoration, dizziness, headache and fatigue. Pneumonia was suspected by Computed Tomography (CT) test at the local primary hospital. The symptoms did not improve after cefuroxime and moxifloxacin treatment for 3 days. On April 42,017, the patient developed seizures and unconsciousness, and was then transferred and admitted to the emergency department of Peking Union Medical College Hospital (PUMCH). Laboratory tests revealed that the patient’s white blood cell count was 5.67 × 10⁹/L with 63% neutrophils, hemoglobin was 11.91 g/L, platelet count was 16.0 × 10⁹/L, and procalcitonin (PCT) was < 0.5 ng/mL. The patient was treated with moxifloxacin for infection, and midazolam for sedation and recurrence of convulsions. He was also transfused with platelets and put on a ventilator.

On April 52,017, further lab examinations found that brucellosis Rose Bengal Test was positive, and thus minocycline and rifampicin administration were initiated for brucellosis treatment. The patient was also diagnosed with thrombotic thrombocytopenic purpura (TTP) syndrome with a very low platelet count of 16.0 × 10⁹/L for which methylprednisolone and continuous plasma exchange were commenced to treat the patient. On April 132,017, sputum culture yielded extended-spectrum β-lactamase (ESBL) positive Klebsiella pneumoniae and ESBL negative Proteus mirabilis. Microbiology tests from other specimens (cerebrospinal fluid, bone marrow, femoral vein catheter blood and jugular vein catheter blood) were all negative from April 5 to April 132,017. The patient had serious halitosis as reported by the doctor in charge, but no pathogen was isolated from the oral secretion. On April 5 and 7, three sets of blood cultures were taken but all were negative for pathogens. On April 13, the patient developed a high fever, and another set of blood cultures was taken, and was positive after incubation for 25 h (aerobic) and 51 h (anaerobic) in the BacT/Alert automated blood culturing system. Further tests identified the cultured organisms as Streptococcus mitis (aerobic bottle) and S.moorei (anaerobic bottle). Treatment was adjusted accordingly, which included replacement of venous pipeline and empirical use of vancomycin and meropenem. The patient’s body temperature and white blood cell count returned to normal levels. Unfortunately, the patient had been in a coma since admission, and on April 21, the patient died of severe TTP.

Microbiology and molecular examination

S.moorei is a strict anaerobic organism which can only grow under anaerobic conditions. On blood agar it forms gray white, non-hemolytic colonies (around 0.5 mm in diameter) after 72 h of incubation at 37 °C. Gram staining morphology revealed short to long non-spore-forming Gram-positive bacilli. S.moorei grows slowly, produces relatively few positive biochemical reactions, and phenotypic variations appear to be commonly exhibited by different strains. Due to these challenges, S.moorei cannot be identified using any commercially available identification kits [15]. Moreover, the organism cannot be identified by Vitek (bioMérieux) or Bruker Matrix-Assisted Laser Desorption/ Ionization Time-of-Flight (MALDI-TOF) as the organism’s spectrum is unavailable in the respective databases.

Antimicrobial susceptibility of S.moorei was determined by the E-test gradient method according to the manufacturer’s instructions. Brucella blood agar supplemented with hemin and vitamin K was used as the primary plate, and Bacteroides fragilis ATCC 25285 was used as the quality control strain. The breakpoints for antimicrobial agents tested were according to Clinical and Laboratory Standards Institute (CLSI) guidelines 27rd informational supplement (M100-S27), Antimicrobial susceptibility results of S. moorei are shown in Table 1.

Table 1 Antimicrobial susceptibility results of S. moorei

16S rRNA gene sequencing was performed to reliably identify the organism. The universal primers were 27F (5′-AGAGTTTGATCCTGGCTCAG-3′) and 1492R (5′- TACGGCTACCTTGTTACGACTT − 3′), generating a sequence with 1403 base pairs. BLAST analysis matched the strain to S.moorei strain JCM 10645 with identity similarity of 99.9%. We also constructed a phylogenetic tree [16] of the clinical isolate 17B10385 in this study with S.moorei from GenBank and closely related genera [1, 12]. The phylogenetic tree analysis also confirmed our clinical isolate as S.moorei (Fig. 1). The 16S rRNA gene sequence of our S.moorei strain has been deposited in GenBank (accession number MK989992).

Fig. 1

Phylogenetic tree showing the relationships of the blood culture isolate to S. moorei isolates and members of other related genera. The tree was constructed by using the neighbour-joining method and bootstrap values calculated from 1000 trees. The accession numbers shown are those in the GenBank database. ***: the clinical S.moorei isolate 17B10385 in this study

Discussion and conclusions

Early studies showed that S.moorei is phylogenetically related to Eubacterium. Eubacterium includes all anaerobic, non-spore-forming, Gram-positive bacilli except Propionibacterium, Lactobacillus and Bifidobacterium. The main glucose fermentation product for S.moorei is acetic acid, whilst for Propionibacterium, Lactobacillus, Bifidobacterium and Eubacterium, it is propionic acid, lactic acid, acetic acid, both butyric acids and formic acid [1]. Due to differences in culture conditions, G + C contents and fermentation products, S.moorei was assigned to a new species.

In the last decade, S. moorei has mainly been reported to cause oral diseases, including halitosis [3,4,5], endodontic infections [6, 7], peri-radicular lesions [8], refractory periodontitis [9], root canals [7], periodontal disease and dentoalveolar abscesses [2]. Studies show that S.moorei mainly colonizes the oral cavity of halitosis patients, with detection frequency in healthy volunteers much less than in halitosis patients. The distribution of S.moorei varies by race and gender, being more prevalent in African Americans, followed by Hispanics and Whites, and in males than females [3,4,5]. S.moorei adheres to oral epithelial cells through adhesins. Biofilm formation is a key step in the development of halitosis [17]. Furthermore, S.moorei produces beta galactosidase and hydrogen sulfide, which play important roles in halitosis [4].

In addition to oral diseases, S.moorei is reported to cause wound and blood stream infections, although this is relatively rare. To date, there are only four reports about S.moorei bacteremia [11,12,13,14], and one report on wound infection [10]. Table 2 summarizes S. moorei bacteremia and wound infections. Including the present case, there are only 9 cases of S. moorei bacteremia; 5 cases of S. moorei bacteremia were reported by Pedersen during a period of 7 years [14]. S. moorei deposited in the clone library was isolated from only 9 cases in a pool of 400 surgical wound infections. Clinical data indicates that patients with compromised immunity (such as malignant disease, intravenous drug abuser, diabetes and history of surgery) are more susceptible to S.moorei bacteremia across gender and age. S.moorei is susceptible to commonly used anti-anaerobic agents (e.g., penicillin, piperacillin-tazobactam, clindamycin, metronidazole, meropenem, moxifloxacin, tegacycline and vancomycin). For wound infections, surgical debridement and drainage is commonly required. In the present case, the high fever developed during treatment may be related to the entry of S.moorei and Streptococcus mitis into the bloodstream. After replacement of venous pipeline and empirical use of vancomycin and meropenem, the patient’s body temperature and the total leukocyte count returned back to normal.

Table 2 Review of published S. moorei literature^aand one case from our hospital over the past 12 years

S.moorei bloodstream infection may originate from oral infection, lung abscess, abdominal infection, and the habit of licking needle by intravenous drug users. The patient in this case had serious halitosis, which maybe the origin of the bacteremia. However, we failed to culture this pathogen from oral secretions, possibly due to the fact that oral secretions are not routinely cultured for anaerobic pathogens. Thus for patients with oral diseases such as halitosis, anaerobic cultures should be strongly recommended to identify suspicious pathogens.

The newly discovered S. moorei was isolated from patients with oral diseases and immune deficiency. Although rarely isolated, its pathogenicity in oral, wound and bloodstream infections is very clear. S. moorei exhibits susceptibility to common antibiotics used for anaerobic infections. Prior use of antibiotics before blood cultures are taken may yield negative results. Due to the special culture conditions and specialized identification method, the prevalence of S. moorei bacteremia may be underestimated. Laboratory staff and clinicians should pay more attention to such rare bacteria and their clinical significance. Optimization of blood culture procedures and utilization of 16S rRNA gene sequencing are powerful tools for rare pathogen identification from blood and other sterile body fluids.