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Association of a nonsynonymous substitution in the condensin NCAPG gene with traits of eggs in laying hens

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Russian Journal of Genetics: Applied Research

Abstract

One of the most important areas of research in the biology and genetics of farmed animals is one of identification of genes controlling the expression of traits with practical importance for animal breeding. For most of these characteristic features, the wide variation in gene expression in specific loci, which are called quantitative trait loci (QTL), is typical. Eggs have been researched for decades due to their importance for the reproduction of birds, as well as for its widespread use in pharmaceutical, cosmetic, and food industries. Breeding hens and crosslines are a necessary step for producing eggs with the desired quality. The results of this work are recommended for use to create systems of molecular markers for the marker selection of layers and obtain new lines and cross hens with larger mass eggs. Compared to the existing conventional systems of selecting layers on this basis, this will eliminate the assessment of the genotype of male progeny, which will significantly reduce breeding time. The system of markers will appear as a set of primers for detecting gene alleles that have a significant impact on the characteristics as above. The use of the molecular markers of high-performance systems for direct selection based on domestic chicken eggs should lead to substantial progress in biotechnology poultry and help avoid having to purchase similar systems from outside the country. The association of the condensin NCAPG gene with the egg traits of domestic chicken has been studied. Associations of the SNP alleles of the rs14491030 marker localized in exon 8 of the NCAPG gene with the trait “the weight eggs,” p < 0.001, as well as with the elastic deformation of the egg shell, p < 0.026, have been found. It has been found that a single nucleotide nonsynonymous AG substitution leads to a significant increase in egg weight. The marker SNP rs14491030 with the observed significant effect on the egg weight trait can be recommended for use in breeding laying hens. The calculations of the relative fitness of genotypes of the SNP rs14491030 marker suggest a natural selection for heterozygotes. The results obtained are discussed in connection with the role of the canonical condensin complex in the compaction of chromatin and segregation of chromosomes.

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References

  • Ayala, F.J., Population and Evolutionary Genetics: A Primer, Benjamin-Cummings Pub Co, 1982.

    Google Scholar 

  • Eberlein, A., Takasuga, A., Setoguchi, K., Pfuhl, R., Flisikowski, K., Fries, R., Klopp, N., Furbass, R., Weikard, R., and Kuhn, C., Dissection of genetic factors modulating fetal growth in cattle indicates a substantial role of the non-SMC condensin I complex, subunit G (NCAPG) gene, Genetics, 2009, vol. 183, no. 3, pp. 951–964.

    CAS  Google Scholar 

  • Goraga, Z.S., Nassar, M.K., and Brockmann, G.A., Quantitative trait segregating in crosses between New Hampshire and White Leghorn chicken lines: I. Egg production traits, Anim. Genet., 2011, vol. 43, pp. 183–189.

    Article  PubMed  Google Scholar 

  • Hirano, T., Kobayashi, R., and Hirano, M., Condensins, chromosome condensation protein complexes containing XCAP-C,XCAP-E and a Xenopus homolog of the Drosophila Barren protein, Cell, 1997, vol. 89, pp. 511–521.

    CAS  Google Scholar 

  • Hirano, T., Condensins: Organizing and segregating the genome, Curr. Biol., 2005, vol. 15, pp. 265–275.

    Article  Google Scholar 

  • Hirano, T., At the heart of the chromosome: SMC proteins in action, Nat. Rev. Mol. Cell Biol., 2006, vol. 7, pp. 311–322.

    Article  CAS  PubMed  Google Scholar 

  • Kim, J.H., Zhang, T., Wong, N.C., Davidson, N., Maksimovic, J., and Oshlack, A., Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes, Nat. Commun., 2013, vol. 4, p. 2537.

    PubMed  PubMed Central  Google Scholar 

  • Lindholm-Perry, A.K., Sexten, A.K., Kuehn, L.A., Smith, T.P., King, D.A., Shackelfold, S.D., Wheeler, T.I., Ferrel, C.L., Jenkins, T.G., Snelling, W.M., and Freetly, H.C., Association, effects and validation of polymorphisms within the NCAPG–LCORL locus located on BTA6 with feed intake,gain,meat and carcass traits in beef cattle, BMC Genet., 2011, no. 12, p. 103.

    CAS  PubMed  Google Scholar 

  • Necsulea, A. and Kaessmann, H., Evolutionary dynamics of coding and noncoding transcriptomes, Annu. Rev. Genet., 2014, vol. 15, pp. 734–748.

    Article  CAS  Google Scholar 

  • Neuwald, A.F. and Hirano, T., HEAT repeats associated with condensins, cohesions and other chromosome-related complexes, Genome, 2000, vol. 10, pp. 1445–1452.

    Article  CAS  Google Scholar 

  • Pryce, J.E., Hayes, B.J., Bolorman, S., and Goddard, M.E., Polymorphic regions affecting human height also control stature in cattle, Genetics, 2011, vol. 187, pp. 981–984.

    Article  PubMed  PubMed Central  Google Scholar 

  • Sasaki, O., Odawara, S., Takahashi, H., Nirasava, K., Oyamada, Y., Yamamoto, R., Ishi, K., Nagamine, Y., Takeda, H., Kobayashi, E., and Furukawa, T., Genetic mapping of quantitative trait loci affecting body weight, egg character and egg production in F2 intercross chickens, Anim. Genet., 2004, vol. 35, pp. 188–194.

    CAS  PubMed  Google Scholar 

  • Schreiweis, M.A., Hester, P.Y., Settar, P., and Moody, D.E., Identification of quantitative trait loci associated with egg quality, egg production, and body weight in F2 resource population of chickens, Anim. Genet., 2005, vol. 37, pp. 106–112.

    Google Scholar 

  • Setoguchi, K., Furata, M., Hirano, T., Nagao, T., Watanabe, T., Sugimoto, Y., and Takasuga, A., Cross-breed comparisons identified a critical 591-kb region for bovine carcass weight QTL (CW-2) on chromosome 6 and the Ile-442-Met substitution in NCAPG as a positional candidate, BMC Genet., 2009, vol. 10, p. 43.

    Article  PubMed  PubMed Central  Google Scholar 

  • Signer-Hasler, H., Flury, C., Haase, B., Simianer, H., Leeb, T., and Rieder, S., A genome-wide association study reveals loci influencing height and other conformation traits in horses, J. Pone, 2012, vol. 7, no. 5, pp. 372–382.

    Google Scholar 

  • Sutani, T., Yuasa, T., Tomonaga, T., Dohmae, N., Takio, K., and Yanagida, M., Fission yeast condensin complex: Essential roles of non-SMC subunits for condensation and cdc2 phosphorylation of Cut3/SMC4, Genes Dev., 1999, vol. 13, pp. 2271–2283.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tuiskula-Haavisto, M., Honkatukia, M., and Vilkki, J., Mapping of quantitative trait loci affecting quality and production traits in egg layers, Poultry Sci., 2002, vol. 81, pp. 919–927.

    Article  CAS  Google Scholar 

  • Weikard, R., Almaier, E., Suhre, K., Weinberg, K.M., Hammon, H.M., Albreecht, E., Setoguchi, K., Takasuga, A., and Kuhn, C., Metabolomic profiles indicate distinct physiological pathways affected by two loci with major divergent effect on Bos Taurus growth and lipid deposition, Physiol. Genomic, 2010, vol. 42A, no. 2, pp. 79–88.

    Article  CAS  Google Scholar 

  • Weller, J.I., Quantitative Trait Loci Analysis in Animals, London: CABI Publ., 2012, 2nd ed.

    Google Scholar 

  • Wolc, A., Arango, J., Settar, P., Fulton, J.E., O’Sullivan, N.P., Preisinger, R., Habier, D., Fernando, R., Garrick, D.J., Hill, W.G., and Dekkers, J.C., Genome-wide association analysis and genetic architecture of egg weight and egg uniformity in layer chickens, Anim. Genet., 2012, vol. 43, pp. 87–96.

    Article  PubMed  Google Scholar 

  • Wood, A.J., Severson, A.F., and Meyer, B.J., Condensin and cohesin complexity: The expanding repertoire of functions, Nat. Rev. Genet., 2010, vol. 11, pp. 391–404.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu, G., Bazer, F.W., Davis, T.A., Kim, S.W., Li, P., Rhoads, J.M., Smith, S.B., Spencer, T.E., and Yin, Y., Arginine metabolism and nutrition in growth, health and disease, Amino Acids, 2009, vol. 37, no. 1, pp. 153–168.

    Article  CAS  Google Scholar 

  • Xing, H., Vanderford, N.L., and Sarge K.D. The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action, Nat. Cell Biol., 2008, vol. 10, pp. 1318–1323.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Correspondence to M. G. Smaragdov.

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Original Russian Text © O.Yu. Barkova, M.G. Smaragdov, 2016, published in Vavilovskii Zhurnal Genetiki i Selektsii, 2016, Vol. 20, No. 1, pp. 34–38.

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Barkova, O.Y., Smaragdov, M.G. Association of a nonsynonymous substitution in the condensin NCAPG gene with traits of eggs in laying hens. Russ J Genet Appl Res 6, 804–808 (2016). https://doi.org/10.1134/S2079059716080037

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  • DOI: https://doi.org/10.1134/S2079059716080037

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