Skip to main content
Log in

Bacterial Communities of Regressive Spots in Ombrotrophic Bogs: Structure and Functions

  • EXPERIMENTAL ARTICLES
  • Published:
Microbiology Aims and scope Submit manuscript

Abstract

This research analyses the structure and functions of bacterial communities of regressive spots in ombrotrophic bogs. Algal biomass was found to predominate in the biomass structure of regressive spots, while fungal mycelial biomass predominated in the layers of non-regressive ombrotrophic bog peat. A number of bacteria in regressive spots determined by direct counts was three to seven times higher than the one in non-regressive ombrotrophic bog peat. Although the Proteobacteria and Acidobacteria predominated in the samples studied, their shares in non-regressive ombrotrophic bog peat were lower. Members of the phylum Verrucomicrobia predominated in the regressive spots, while in non-regressive raised bog peat they were among the minor components. It was found that the epiphytic-saprotrophic bacterial communities were dominated by bacilli during the dry season and by the proteobacteria during the wet season. According to the results of the 16S rRNA gene sequencing, the bacteria found were identified as Chryseobacterium, Stenotrophomonas, Pseudomonas, and Chromobacterium. Physiological activity of the bacterial communities in regressive spots was similar to that of fen peat communities due to abundance of bacteria using easily accessible polymers. Nitrogen-fixing activity of the bacterial communities was found to be significantly higher in regressive spots than in non-regressive ombrotrophic bog peat.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1.
Fig. 2.
Fig. 3.

Similar content being viewed by others

REFERENCES

  1. Bakhnov, V.K., Biogeokhimicheskie aspekty bolotoobrazovatel’nogo protsessa (Biogeochemical Aspects of Bog Formation), Novosibirsk: Nauka, 1986.

  2. Behrendt, U., Ulrich, A., and Schumann, P., Chryseobacterium gregarium sp. nov., isolated from decaying plant material, Int. J. Syst. Evol. Microbiol., 2008, vol. 58, pp. 1069–1074.

    Article  CAS  Google Scholar 

  3. Belyea, L.R. and Lancaster, J., Inferring landscape dynamics of bog pools from scaling relationship and spatial patterns, J. Ecol., 2002, vol. 90, pp. 223–234.

    Article  Google Scholar 

  4. Bergey’s Manual of Systematic Bacteriology, 8th ed., vols. 1–2, Holt, J.G., Ed., Baltimore: Williams and Wilkins, 1986.

  5. Binks, P.R., Nicklin, S., and Bruce, N.C., Degradation of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) by Stenotrophomonas maltophilia PB1, Appl. Environ. Microbiol., 1995, vol. 61, pp. 1318–1322.

    Article  CAS  Google Scholar 

  6. Bogdanovskaya-Gienef, I.D., On some regressive phenomena in upland bogs, in Sbornik rabot k 75-letiyu so dnya rozhdeniya akademika V.N. Sukacheva (Collected Works to Academician Sukachev’s 75th Anniversary), Moscow: AN SSSR, 1956, pp. 90–107.

    Google Scholar 

  7. Bradis, E.M., Bog plant cover as an indicator of their trophic type, in Osnovnye printsipy izucheniya bolotnykh biogeotsenozov (Major Principles of Research on Bog Biogeocenoses), Leningrad: Nauka, 1972, pp. 29–38.

  8. Dedysh, S.N., Pankratov, T.A., Belova, S.E., Kulichevskaya, I.S., and Liesack, W., Phylogenetic analysis and in situ identification of Bacteria community composition in an acidic Sphagnum peat bog, Appl. Environ. Microbiol., 2006, vol. 72, pp. 2110–2117.

    Article  CAS  Google Scholar 

  9. Dobrovol’skaya, T.G., Golovchenko, A.V., and Zvyagintsev, D.G., Analysis of ecological factors limiting the destruction of high moor peat, Euras. Soil Sci., 2014, vol. 47, pp. 182–193.

    Article  Google Scholar 

  10. Dobrovolskaya, T.G., Golovchenko, A.V., Lysak, L.V., and Zenova, G.M., Fizikokhimiya i biologiya torfa. Metody otsenki chislennosti i raznoobraziya bakterial’nykh i aktinomitsetnykh kompleksov torfyanykh pochv (Physical Chemistry and Biology of Peat. Methods for Assessment of Abundance and Diversity of Bacterial and Actinomycete Complexes in Peat Soils), Tomsk: TGPU, 2010.

  11. Foster, D.R. and Fritz, S.C., Mire development, pool formation and landscape processes on patterned fens in Dalarna, central Sweden, J. Ecol., 2002, vol. 75, pp. 409–437.

    Article  Google Scholar 

  12. Hoang, V.A., Kim, Y.J., Nguyen, N.L., and Yang, D.C., Chryseobacterium yeoncheonense sp. nov., with ginsenoside converting activity isolated from soil of a ginseng fie, Arch. Microbiol., 2013, vol. 195, pp. 463–471.

    Article  CAS  Google Scholar 

  13. Kozhevin, P.A., Polyanskaya, L.M., and Zvyagintsev, D.G., Developmental dynamics of different microorganisms in soil, Mikrobiologiya, 1979, vol. 48, no. 4, pp. 490–494.

    CAS  Google Scholar 

  14. Kulichevskaya, I.S., Danilova, O.V., Tereshina, V.M., Kevbrin, V.V., and Dedysh, S.N., Descriptions of Roseiarcus fermentans gen. nov. sp. nov., a bacteriochlorophyll a-containing fermentative bacterium phylogenetically related to alphaproteobacterial methanotrophs, and of the family Roseiarcaceae fam. nov., Int. J. Syst. Evol. Microbiol., 2014, vol. 64, pp. 2558–2565.

    Article  CAS  Google Scholar 

  15. Kulichevskaya, I.S., Suzina, N.E., Liesack, W., and Dedysh, S.N., Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemoorganotroph from subdivision 3 of the Acidobacteria,Int. J. Syst. Evol. Microbiol., 2010, vol. 60, pp. 301–306.

    Article  Google Scholar 

  16. Kwon, S.W., Kim, J.S., Park, I.C., Yoon, S.H., Park, D.H., Lim, C.K., and Go, S.J., Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea, Int. J. Syst. Evol. Microbiol., 2003, vol. 53, pp. 21–27.

    Article  CAS  Google Scholar 

  17. Lopatin, V.D., On the principal ecological features of bogs, Russ. J. Ecol., 1997, no. 6, pp. 371–374.

  18. Mamai, A.V., Stepanov, A.L., and Fedorets, N.G., Microbial transfromation of nitrogen compounds in mid-taiga soils, Vestn. Mos. Univ., Ser. 17.Soil Sci., 2013, no. 4, pp. 32–38.

  19. Manucharova, N.A., Vlasenko, A.N., Tourova, T.P., Panteleeva, A.N., Stepanov, A.L., and Zenova, G.M., Thermophilic chitinolytic microorganisms of brown semidesert soil, Microbiology (Moscow), 2008, vol. 77, pp. 610–615.

    Article  CAS  Google Scholar 

  20. Metody pochvennoi biokhimii i mikrobiologii (Methods of Soil Biochemistry and Microbiology), Moscow: Mos. Gos. Univ., 1991.

  21. Pankratov, T.A. and Dedysh, S.N., Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs, Int. J. Syst. Evol. Microbiol., 2010, vol. 60, pp. 2951–2959.

    Article  CAS  Google Scholar 

  22. Sangwan, P., Chen, X., Hugenholtz, P., and Janssen, P.H., Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov. of the phylum Verrucomicrobia,Appl. Environ. Microbiol., 2004, vol. 70, pp. 5875–5881.

    Article  CAS  Google Scholar 

  23. Serkebaeva, Y.M., Kim, Y., Liesack, I.V., and Dedysh, S.N., Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions, PLoS One, 2013, vol. 8, no. 5: e63994. https://doi.org/10.1371/journal.pone.0063994

    Article  PubMed  PubMed Central  Google Scholar 

  24. Shcherbakov, A.V., Bragina, A.V., Kuzmina, E.Yu., Berg, Ch., Muntyan, A.N., Makarova, N.M., Malfanova, N.V., Cardina-le, M., Berg, G., Chebotar, V.K., and Tikhonovich, I.A., Endophytic bacteria of Sphagnum mosses as promising objects of agricultural microbiology, Microbiology (Moscow), 2013, vol. 82, pp. 306–315.

    Article  CAS  Google Scholar 

  25. Umarov, M.M., Kurakov, A.V., and Stepanov, A.L., Mikrobiologicheskaya transformatsiya azota v pochve (Microbial Transformation of Nitrogen in Soil), Moscow: Geos, 2007.

  26. Vandamme, P., Bernardet, J.F., Segers, P., Kerssters, K., and Holmes, B., New perspectives in the classification of the Flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov. and Empedobacter norn. rev., Int. J. Syst. Bacteriol., 1994, vol. 44, pp. 827–831.

    Article  Google Scholar 

  27. Vomperskii, S.E., Sirin, A.A., and Glukhov, A.I., Formirovanie i rezim stoka pri gidrolesomelioratsii (Formation and Regime of Run-off during Hydro-Forest Melioration), Moscow: Nauka, 1988.

  28. Wolf, A., Fritze, A., Hagemann, M., and Berg, G., Stenotrophomonas rhizophila sp. nov., a novel plant-associated bacterium with antifungal properties, Int. J. Syst. Evol. Microbiol., 2002, vol. 52, pp. 1937–1944.

    CAS  PubMed  Google Scholar 

  29. Yakushev, A.V., Integral structural-functional method for characterizing microbial populations, Euras. Soil Sci., 2015, vol. 48, pp. 378–394.

    Article  CAS  Google Scholar 

Download references

Funding

The work was supported by the Russian Foundation for Basic Research, project no. 16-04-00452-a.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to T. G. Dobrovolskaya.

Ethics declarations

The authors declare that they have no conflict of interest. This article does not contain any studies involving animals or human participants performed by any of the authors.

Additional information

Translated by P. Sigalevich

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Dobrovolskaya, T.G., Golovchenko, A.V., Yurchenko, E.N. et al. Bacterial Communities of Regressive Spots in Ombrotrophic Bogs: Structure and Functions. Microbiology 89, 107–114 (2020). https://doi.org/10.1134/S0026261720010063

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S0026261720010063

Keywords:

Navigation