Skip to main content
Log in

Structure of Aqueous Solutions of Trimethylaminoxide, Urea, and Their Mixture

  • Published:
Journal of Structural Chemistry Aims and scope Submit manuscript

Abstract

Aqueous solutions of natural osmolytes (trimethylaminoxide (TMAO), urea, and their mixture) at relatively small (biologically relevant) concentrations are analyzed by the all-atom molecular dynamics simulation. In the recent work (Smolin N. et al. PCCP. 2017. 19. P. 6345) it has been noted that in the protein hydration shell the fraction of TMAO molecules is much smaller than that of urea. The urea addition causes a further decrease in the TMAO fraction in the protein hydration shell. This work shows that in binary solutions urea fraction at urea molecules is always larger than the bulk urea concentration. At the same time, the TMAO fraction near TMAO is the same as in the bulk. In ternary solutions, TMAO and urea behave the same as the binary ones, i.e. they do not noticeably affect each other. This means that the behavior of TMAO and urea molecules in the protein hydration shell is associated with protein rather than their interaction with each other.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. P. H. Yancey, M. E. Clark, S. C. Hand, R. D. Bowlus, and G. N. Somero. Science, 1982, 217, 1214.

    Article  CAS  PubMed  Google Scholar 

  2. C. Krywka, C. Sternemann, M. Paulus, M. Tolan, C. Royer, and R. Winter. Chem. Phys. Phys. Chem., 2008, 9, 2809.

    Article  CAS  Google Scholar 

  3. D. W. Bolen and G. Rose. Annu. Rev. Biochem., 2008, 77,339.

    Article  CAS  PubMed  Google Scholar 

  4. Y. L. A. Rezus, H. J. Bakker. J. Phys. Chem. B., 2009, 113, 4038.

    Article  CAS  PubMed  Google Scholar 

  5. F. Meersman, D. Bowron, A. K. Soper, and M. H. J. Koch. Biophys. J., 2009, 97, 2559.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. J. Ma, I. M. Pazos, and F. Gai. Proc. Natl. Acad. Sci. USA, 2014, 111, 8476.

    Article  CAS  PubMed  Google Scholar 

  7. Q. Zou, B. J. Bennion, V. Daggett, and K. P. Murphy. J. Am. Chem. Soc., 2002, 124, 1192.

    Article  CAS  PubMed  Google Scholar 

  8. B. J. Bennion and V. Daggett. Proc. Natl. Acad. Sci. USA, 2004, 101, 6433.

    Article  CAS  PubMed  Google Scholar 

  9. S. Paul and G. N. Patey. J. Phys. Chem. B., 2007, 111, 7932.

    Article  CAS  PubMed  Google Scholar 

  10. H. Wei, Y. Fan, and Y. Q. Gao. J. Phys. Chem. B., 2010, 114,557.

    Article  CAS  PubMed  Google Scholar 

  11. D. R. Canchi, D. Paschek, and A. Garcia. J. Am. Chem. Soc., 2010, 132, 2338.

    Article  CAS  PubMed  Google Scholar 

  12. N. Smolin, V. P. Voloshin, A. V. Anikeenko, A. Geiger, R. Winter, and N. M. Medvedev. Phys. Chem. Chem. Phys., 2017, 19, 6345–6357.

    Article  CAS  PubMed  Google Scholar 

  13. D. R. Canchi and A. E. Garcia. Annu. Rev. Phys. Chem., 2013, 64,273.

    Article  CAS  PubMed  Google Scholar 

  14. D. R. Canchi, P. Jayasimha, D. C. Rau, G. I. Makhatadze, and F. E. Garcia. J. Phys. Chem. B., 2012, 116, 12095.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. L. Larini and J.-E. Shea. J. Phys. Chem. B, 2013, 117, 13268.

    Article  CAS  PubMed  Google Scholar 

  16. M. V. Fedotova, S. E. Kruchinin, and G. N. Chuev. New J. Chem., 2017, 41, 1219.

    Article  CAS  Google Scholar 

  17. D. W. Bolen and I. V. Baskakov. J. Mol. Biol., 2001, 310,955.

    Article  CAS  PubMed  Google Scholar 

  18. E. Schneck, D. Horinek, and R. R. Netz. J. Phys. Chem. B, 2013, 117, 8310.

    Article  CAS  PubMed  Google Scholar 

  19. S. Paul and G. N. Patey. J. Am. Chem. Soc., 2007, 129, 4476.

    Article  CAS  PubMed  Google Scholar 

  20. S. Paul and G. N. Patey. J. Phys. Chem. B., 2008, 112, 11106.

    Article  CAS  PubMed  Google Scholar 

  21. F. Meersman, D. Bowron, A. K. Soper, and M. H. J. Koch. Phys. Chem. Chem. Phys., 2011, 13, 13765.

    Article  CAS  PubMed  Google Scholar 

  22. P. Ganguly, T. Hajari, J.-E. Shea, and N. F. A. van der Vegt. J. Phys. Chem. Lett., 2015, 6,581.

    Article  CAS  PubMed  Google Scholar 

  23. Y. L. A. Rezus and H. J. Bakker. PNAS, 2006, 103, 18417.

    Article  CAS  PubMed  Google Scholar 

  24. D. Bandyopadhyay, S. Mohan, S. K. Ghosh, and N. Choudhury. J. Phys. Chem. B., 2014, 118, 11757.

    Article  CAS  PubMed  Google Scholar 

  25. J. K. Carr, L. E. Buchanan, J. R. Schmidt, M. T. Zanni, and J. L. Skinner. J. Phys. Chem. B., 2013, 117, 13291.

    Article  CAS  PubMed  Google Scholar 

  26. S. Funkner, M. Havenith, and G. Schwaab. J. Phys. Chem. B, 2012, 11, 13374.

    Article  CAS  Google Scholar 

  27. D. M. Makarov, G. I. Egorov, and A. M. Kolker. J. Chem. Eng. Data, 2015, 60, 1291.

    Article  CAS  Google Scholar 

  28. J. Hunger, N. Ottosson, K. Mazur, M. Bonn, and H. J. Bakker. Phys. Chem. Chem. Phys., 2015, 17,298.

    Article  CAS  PubMed  Google Scholar 

  29. A. V. Anikeenko, E. D. Kadtsyn, and N. N. Medvedev. J. Mol. Liq., 2017, 245, 35–41.

    Article  CAS  Google Scholar 

  30. C. Hölzl, et al. J. Chem. Phys., 2016, 144, 144104.

    Article  CAS  PubMed  Google Scholar 

  31. S. Weerasinghe and P. E. Smith. J. Phys. Chem. B., 2003, 107, 3891.

    Article  CAS  Google Scholar 

  32. J. L. F. Abascal and C. Vega. J. Chem. Phys., 2005, 123, 234505.

    Article  CAS  PubMed  Google Scholar 

  33. G. Bussi, D. Donadio, and M. Parrinello. J. Chem. Phys., 2007, 126, 014101.

    Article  CAS  PubMed  Google Scholar 

  34. M. Parrinello and A. Rahman. J. Appl. Phys., 1981, 52, 7182.

    Article  CAS  Google Scholar 

  35. Yu. M. Kesler, A. L. Zaitsev. Solvophobic Effects. Theory, Experiment, Practice [in Russian]. Khimiya, Leningrad, 1989.

    Google Scholar 

  36. J. M. Stubbs and J. I. Siepmann. J. Chem. Phys., 2004, 121, 1525.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to N. N. Medvedev.

Additional information

Original Russian Text © 2018 E. D. Kadtsyn, A. V. Anikeenko, N. N. Medvedev.

Translated from Zhurnal Strukturnoi Khimii, Vol. 59, No. 2, pp. 359–367, March–April, 2018.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kadtsyn, E.D., Anikeenko, A.V. & Medvedev, N.N. Structure of Aqueous Solutions of Trimethylaminoxide, Urea, and Their Mixture. J Struct Chem 59, 347–354 (2018). https://doi.org/10.1134/S0022476618020130

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S0022476618020130

Keywords

Navigation