Abstract
Changes in the methylation pattern of genomic DNA, particularly hypermethylation of tumor suppressor genes, occur at early stages of tumor development. Errors in DNA methylation contribute to both initiation and progression of various cancers. This stimulates significant interest in searching for inhibitors of C5-DNA-methyltransferases (MTases). Here we review the known nucleoside mechanism-based reversible and irreversible inhibitors of the MTases, as well as non-nucleoside ones, and discuss their inhibitory mechanisms and application for MTase investigations and cancer therapy.
Similar content being viewed by others
Abbreviations
- AdoHcy:
-
S-(5′-adenosyl)-L-homocysteine
- AdoMet:
-
S-(5′-adenosyl)-L-methionine
- d4HCyd:
-
1-(2′-deoxy-β-D-ribofuranosyl)-2-pyrimidinone
- DTT:
-
dithiothreitol
- DZdCyd:
-
5,6-dihydro-5-aza-2′-deoxycytidine
- EGCG:
-
(−)-epigallocatechin-3-gallate
- FdCyd:
-
5-fluoro-2′-deoxycytidine
- MTase:
-
DNA-methyltransferase
- NEM:
-
N-ethylmaleimide
- P:
-
2-pyrimidinone
- 4′-SdCyd:
-
4′-thio-2′-deoxycytidine
- sinefungin:
-
S-adenosyl-L-ornithine
- XRSA:
-
X-ray structural analysis
- ZCyd:
-
5-azacytidine
- ZdCyd:
-
5-aza-2′-deoxycytidine
References
Gromova, E. S., and Khoroshaev, A. V. (2003) Mol. Biol. (Moscow), 37, 260–272.
Jeltsch, A. (2002) Chembiochem., 3, 274–293.
Cheng, X., and Roberts, R. J. (2001) Nucleic Acids Res., 29, 3784–3795.
Bird, A. (2002) Genes Dev., 16, 6–21.
Goll, M. G., and Bestor, T. H. (2005) Annu. Rev. Biochem., 74, 481–514.
Roberts, R. J., Vincze, T., Posfai, J., and Macelis, D. (2007) Nucleic Acids Res., 35, D269–D270.
Hermann, A., Gowher, H., and Jeltsch, A. (2004) Cell Mol. Life Sci., 61, 2571–2587.
Kumar, S., Cheng, X., Klimasauskas, S., Mi, S., Posfai, J., Roberts, R. J., and Wilson, G. G. (1994) Nucleic Acids Res., 22, 1–10.
Posfai, J., Bhagwat, A. S., Posfai, G., and Roberts, R. J. (1989) Nucleic Acids Res., 17, 2421–2435.
Klimasauskas, S., Kumar, S., Roberts, R. J., and Cheng, X. (1994) Cell, 76, 357–369.
Sankpal, U. T., and Rao, D. N. (2002) Crit. Rev. Biochem. Mol. Biol., 37, 167–197.
Lee, Y. F., Tawfik, D. S., and Griffiths, A. D. (2002) Nucleic Acids Res., 30, 4937–4944.
Eden, A., Gaudet, F., Waghmare, A., and Jaenisch, R. (2003) Science, 300, 455.
Jones, P. A., and Baylin, S. B. (2002) Nat. Rev. Genet., 3, 415–428.
Baylin, S. B., Esteller, M., Rountree, M. R., Bachman, K. E., Schuebel, K., and Herman, J. G. (2001) Hum. Mol. Genet., 10, 687–692.
Baylin, S. B., and Herman, J. G. (2000) Trends Genet., 16, 168–174.
Jones, P. A., and Laird, P. W. (1999) Nat. Genet., 21, 163–167.
Jones, P. A., and Baylin, S. B. (2007) Cell, 128, 683–692.
Kumar, R., Srivastava, R., Singh, R. K., Surolia, A., and Rao, D. N. (2008) Bioorg. Med. Chem., 16, 2276–2285.
Zingg, J. M., Shen, J. C., Yang, A. S., Rapoport, H., and Jones, P. A. (1996) Nucleic Acids Res., 24, 3267–3275.
Gowher, H., and Jeltsch, A. (2004) Cancer Biol. Ther., 3, 1062–1068.
Christman, J. K. (2002) Oncogene, 21, 5483–5495.
Gabbara, S., and Bhagwat, A. S. (1995) Biochem. J., 307, 87–92.
Palii, S. S., van Emburgh, B. O., Sankpal, U. T., Brown, K. D., and Robertson, K. D. (2008) Mol. Cell Biol., 28, 752–771.
Sheikhnejad, G., Brank, A., Christman, J. K., Goddard, A., Alvarez, E., Ford, H., Jr., Marquez, V. E., Marasco, C. J., Sufrin, J. R., O’Gara, M., and Cheng, X. (1999) J. Mol. Biol., 285, 2021–2034.
Osterman, D. G., DePillis, G. D., Wu, J. C., Matsuda, A., and Santi, D. V. (1988) Biochemistry, 27, 5204–5210.
Taylor, C., Ford, K., and Connolly, B. A. (1993) Biochem. J., 291, 493–504.
Hurd, P. J., Whitmarsh, A. J., and Baldwin, G. S. (1999) J. Mol. Biol., 286, 389–401.
Zhou, L., Cheng, X., and Connolly, B. A. (2002) J. Mol. Biol., 321, 591–599.
Kumar, S., Horton, J. R., Jones, G. D., Walker, R. T., Roberts, R. J., and Cheng, X. (1997) Nucleic Acids Res., 25, 2773–2783.
Flynn, J., Fang, J. Y., Mikovits, J. A., and Reich, N. O. (2003) J. Biol. Chem., 278, 8238–8243.
Knox, J. D., Araujo, F. D., Bigey, P., Slack, A. D., Price, G. B., Zannis-Hadjopoulos, M., and Szyf, M. (2000) J. Biol. Chem., 275, 17986–17990.
Milutinovic, S., Knox, J. D., and Szyf, M. (2000) J. Biol. Chem., 275, 6353–6359.
Fang, M. Z., Wang, Y., Ai, N., Hou, Z., Sun, Y., Lu, H., Welsh, W., and Yang, C. S. (2003) Cancer Res., 63, 7563–7570.
Fang, M. Z., Chen, D., Sun, Y., Jin, Z., Christman, J. K., and Yang, C. S. (2005) Clin. Cancer Res., 11, 7033–7041.
Pina, I. C., Gautschi, J. T., Wang, G. Y., Sanders, M. L., Schmitz, F. J., France, D., Cornell-Kennon, S., Sambucetti, L. C., Remiszewski, S. W., Perez, L. B., Bair, K. W., and Crews, P. (2003) J. Org. Chem., 68, 3866–3873.
Brueckner, B., Boy, R. G., Siedlecki, P., Musch, T., Kliem, H. C., Zielenkiewicz, P., Suhai, S., Wiessler, M., and Lyko, F. (2005) Cancer Res., 65, 6305–6311.
Siedlecki, P., Boy, R. G., Musch, T., Brueckner, B., Suhai, S., Lyko, F., and Zielenkiewicz, P. (2006) J. Med. Chem., 49, 678–683.
Lin, X., Asgari, K., Putzi, M. J., Gage, W. R., Yu, X., Cornblatt, B. S., Kumar, A., Piantadosi, S., DeWeese, T. L., De Marzo, A. M., and Nelson, W. G. (2001) Cancer Res., 61, 8611–8616.
Villar-Garea, A., Fraga, M. F., Espada, J., and Esteller, M. (2003) Cancer Res., 63, 4984–4989.
Lee, B. H., Yegnasubramanian, S., Lin, X., and Nelson, W. G. (2005) J. Biol. Chem., 280, 40749–40756.
Castellano, S., Kuck, D., Sala, M., Novellino, E., Lyko, F., and Sbardella, G. (2008) J. Med. Chem., 51, 2321–2325.
Lin, R. K., Hsu, C. H., and Wang, Y. C. (2007) Anticancer Drugs, 18, 1157–1164.
Yokochi, T., and Robertson, K. D. (2004) Mol. Pharmacol., 66, 1415–1420.
Adams, R. L., and Rinaldi, A. (1987) FEBS Lett., 215, 266–268.
Shvachko, L. P. (2008) Exp. Oncol., 30, 230–234.
Milicic, A., Harrison, L. A., Goodlad, R. A., Hardy, R. G., Nicholson, A. M., Presz, M., Sieber, O., Santander, S., Pringle, J. H., Mandir, N., East, P., Obszynska, J., Sanders, S., Piazuelo, E., Shaw, J., Harrison, R., Tomlinson, I. P., McDonald, S. A., Wright, N. A., and Jankowski, J. A. (2008) Cancer Res., 68, 7760–7768.
Kisseljova, N. P., and Kisseljov, F. L. (2005) Biochemistry (Moscow), 70, 743–752.
Vilkaitis, G., Merkiene, E., Serva, S., Weinhold, E., and Klimasauskas, S. (2001) J. Biol. Chem., 276, 20924–20934.
Bender, C. M., Zingg, J. M., and Jones, P. A. (1998) Pharm. Res., 15, 175–187.
Wu, J. C., and Santi, D. V. (1987) J. Biol. Chem., 262, 4778–4786.
Chen, L., MacMillan, A. M., and Verdine, G. L. (1993) J. Am. Chem. Soc., 115, 5318–5319.
Jones, P. A., and Tailor, S. M. (1980) Cell, 20, 85–93.
Constantinides, P. G., Jones, P. A., and Gevers, W. (1977) Nature, 267, 364–366.
Cheng, J. C., Matsen, C. B., and Gonzales, F. A. (2003) J. Natl. Cancer Inst., 95, 3399–3409.
Lee, W. J., and Kim, H. J. (2007) Mol. Cells, 24, 441–444.
Santi, D. V., Norment, A., and Garret, C. E. (1984) Proc. Natl. Acad. Sci. USA, 81, 6993–6997.
Subach, O. M., Khoroshaev, A. V., Gerasimov, D. N., Baskunov, V. B., Shchyolkina, A. K., and Gromova, E. S. (2004) Eur. J. Biochem., 271, 2391–2399.
Abeles, R. H., and Alston, T. A. (1990) J. Biol. Chem., 265, 16705–16708.
Chen, L., MacMillan, A. M., Chang, W., Ezaz-Nikpay, K., Lane, W. S., and Verdine, G. L. (1991) Biochemistry, 30, 11018–11025.
Friedman, S., and Ansari, N. (1992) Nucleic Acids Res., 20, 3241–3248.
Smith, S. S., Kaplan, B. E., Sowers, L. C., and Newman, E. M. (1992) Proc. Natl. Acad. Sci. USA, 89, 4744–4748.
Sorm, F., Piskala, A., Cihak, A., and Vesely, J. (1964) Experientia, 20, 202–203.
Issa, J. P. (2005) Nat. Clin. Pract. Oncol., 2,Suppl. 1, S24–S29.
Herman, J. G., and Baylin, S. B. (2003) N. Engl. J. Med., 349, 2042–2054.
Juttermann, R., Li, E., and Jaenisch, R. (1994) Proc. Natl. Acad. Sci. USA, 91, 797–801.
Li, L. H., Olin, E. J., Buskirk, H. H., and Reineke, L. M. (1970) Cancer Res., 30, 2760–2769.
Yoo, C. B., Jeong, S., Egger, G., Liang, G., Phiasivongsa, P., Tang, C., Redkar, S., and Jones, P. A. (2007) Cancer Res., 67, 6400–6408.
Beisler, J. A. (1978) J. Med. Chem., 21, 204–208.
McGregor, D. B., Brown, A. G., Cattanach, P., Shepherd, W., Riach, C., Daston, D. S., and Caspary, W. J. (1989) Carcinogenesis, 10, 2003–2008.
Cheng, J. C., Matsen, C. B., Gonzales, F. A., Ye, W., Greer, S., Marquez, V. E., Jones, P. A., and Selker, E. U. (2003) J. Natl. Cancer Inst., 95, 399–409.
Cheng, J. C., Weisenberger, D. J., Gonzales, F. A., Liang, G., Xu, G. L., Hu, Y. G., Marquez, V. E., and Jones, P. A. (2004) Mol. Cell Biol., 24, 1270–1278.
Cheng, J. C., Yoo, C. B., Weisenberger, D. J., Chuang, J., Wozniak, C., Liang, G., Marquez, V. E., Greer, S., Orntoft, T. F., Thykjaer, T., and Jones, P. A. (2004) Cancer Cell, 6, 151–158.
Newman, E. M., and Santi, D. V. (1982) Proc. Natl. Acad. Sci. USA, 79, 6419–6423.
O’Gara, M., Roberts, R. J., and Cheng, X. (1996) J. Mol. Biol., 263, 597–606.
O’Gara, M., Klimasauskas, S., Roberts, R. J., and Cheng, X. (1996) J. Mol. Biol., 261, 634–645.
Wyszynski, M. W., Gabbara, S., and Bhagwat, A. S. (1992) Nucleic Acids Res., 20, 319–326.
Wyszynski, M. W., Gabbara, S., Kubareva, E. A., Romanova, E. A., Oretskaya, T. S., Gromova, E. S., Shabarova, Z. A., and Bhagwat, A. S. (1993) Nucleic Acids Res., 21, 295–301.
Gabbara, S., Sheluho, D., and Bhagwat, A. S. (1995) Nucleic Acids Res., 27, 8914–8923.
Robert, M. F., Morin, S., Beaulieu, N., Gauthier, F., Chute, I. C., Barsalou, A., and MacLeod, A. R. (2003) Nat. Genet., 33, 61–65.
Brueckner, B., and Lyko, F. (2004) Trends Pharmacol. Sci., 25, 551–554.
Lyko, F., and Brown, R. (2005) J. Natl. Cancer Inst., 97, 1498–1506.
Stresemann, C., Brueckner, B., Musch, T., Stopper, H., and Lyko, F. (2006) Cancer Res., 66, 2794–2800.
Wang, Y., Fang, M. Z., Liao, J., Yang, G. Y., Nie, Y., Song, Y., So, C., Xu, X., Wang, L. D., and Yang, C. S. (2003) Clin. Cancer Res., 9, 5257–5263.
Kim, D., Lee, I. S., Jung, J. H., Lee, C. O., and Choi, S. U. (1999) Anticancer Res., 19, 4085–4090.
Siedlecki, P., Boy, R. G., Comagic, S., Schirrmacher, R., Wiessler, M., Zielenkiewicz, P., Suhai, S., and Lyko, F. (2003) Biochem. Biophys. Res. Commun., 306, 558–563.
Brana, M. F., Cacho, M., Gradillas, A., de Pascual-Teresa, B., and Ramos, A. (2001) Curr. Pharm. Des., 7, 1745–1780.
Carter, S. K. (1975) J. Natl. Cancer Inst., 55, 1265–1274.
Hickman, J. A. (1992) Cancer Metastasis Rev., 11, 121–139.
Kiechle, F. L., and Zhang, X. (2002) Clin. Chim. Acta, 326, 27–45.
Yokochi, T., and Robertson, K. D. (2004) Mol. Pharmacol., 66, 1415–1420.
Shieh, F. K., and Reich, N. O. (2007) J. Mol. Biol., 373, 1157–1168.
Friedman, S., and Ansari, N. (1992) Nucleic Acids Res., 20, 3241–3248.
Hanck, T., Schmidt, S., and Fritz, H.-J. (1993) Nucleic Acids Res., 21, 303–309.
Reither, S., Li, F., Gowher, H., and Jeltsch, A. (2003) J. Mol. Biol., 329, 675–684.
Dong, A., Yoder, J. A., Zhang, X., Zhou, L., Bestor, T. H., and Cheng, X. (2001) Nucleic Acids Res., 29, 439–448.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © O. V. Kirsanova, N. A. Cherepanova, E. S. Gromova, 2009, published in Biokhimiya, 2009, Vol. 74, No. 11, pp. 1445–1458.
Rights and permissions
About this article
Cite this article
Kirsanova, O.V., Cherepanova, N.A. & Gromova, E.S. Inhibition of C5-cytosine-DNA-methyltransferases. Biochemistry Moscow 74, 1175–1186 (2009). https://doi.org/10.1134/S0006297909110017
Received:
Revised:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0006297909110017