Skip to main content
Log in

The level of genetic variability of cells in prolonged suspension culture of Arabidopsis thaliana

  • Genetics
  • Published:
Biology Bulletin Aims and scope Submit manuscript

Abstract

The level of heterogeneity and genetic variability of cells in a suspension of Arabidopsis thaliana cultured in vitro for more than seven years was studied. The considerable heterogeneity of the suspension in cell size was shown. As revealed by nuclear DNA cytophotometry, the suspension culture was mixoploid and the amount of DNA in the cells varied from 4 to 16 C. However, PCR with 6 RAPD- and 4 ISSR-primers and their intragroup combinations showed the lowest degree of variability of DNA markers. The genetic distances of clones obtained from a suspension culture of the parent plant were only 1.5%. Differences between the clones were identified with only one pair of 31 primer combinations tested, indicating low level of genetic heterogeneity of the suspension. The results showed that variations in the amount of DNA in the suspension culture cells are not accompanied by significant changes in the DNA sequence.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Arencibia, A., Carmona, E.R., Cornide, M.T., et al., Somaclonal variation in insect-resistant transgenic sugarcane (Saccharum hybrid) plants produced by cell electroporation, Transgenic Res., 1999, vol. 8, pp. 349–360.

    Article  CAS  Google Scholar 

  • Armstrong, C.L. and Phillips, R.L., Genetic and cytogenetic variation in plants regenerated from organogenic and friable embryogenic tissue cultures of maize, Crop Sci., 1988, vol. 28, pp. 363–369.

    Article  Google Scholar 

  • Bairu, M.W., Aremu, A.O., and Van Staden, J., Somaclonal variation in plants: causes and detection methods, Plant Growth Regul., 2011, vol. 63, pp. 147–173.

    Article  CAS  Google Scholar 

  • Barow, M. and Meister, A., Endopolyploidy in seed plant is differently correlated to systematic, organ, life strategy and genome size, Plant Cell Environ., 2003, vol. 26, pp. 571–584.

    Article  Google Scholar 

  • Bassam, B.J. and Caetano-Anolles, G., Automated “hot start” PCR using mineral oil and paraffin wax, Biotechniques, 1993, vol. 14, pp. 30–34.

    CAS  PubMed  Google Scholar 

  • Bogani, P., Simoni, A., Lio, P., and Scialpi, A., Genome flux in tomato cell clones cultured in vitro in different physiological equilibria. A RAPD analysis of variability, Genome, 1996, vol. 39, pp. 846–853.

    Article  CAS  PubMed  Google Scholar 

  • Cote, F.X., Teisson, C., and Perrier, X., Somaclonal variation rate evolution in plant tissue culture: contribution to understanding through a statistical approach, In vitro Cell Dev. Biol., 2001, vol. 37, pp. 539–542.

    Article  Google Scholar 

  • Fras, A. and Maluszynska, J., Regeneration of diploid and tetraploid plants of Arabidopsis thaliana via callus, Acta Biol. Cracovensia, 2003, vol. 45, pp. 145–152.

    Google Scholar 

  • Gaj, M.D. and Maluszynska, M., Genetic variation in callus culture of Arabidopsis thaliana (L.) Heynh., Arabidopsis Inf. Serv., 1987, vol. 23, pp. 1–8.

    Google Scholar 

  • Godwin, I.D., Sangduen, N., Kunanuvatchaidach, R., et al., RAPD polymorphism among variant and phenotypically normal rice (Oryza sativa var. indica) somaclonal progenies, Plant Cell Rep., 1997, vol. 16, pp. 320–324.

    CAS  Google Scholar 

  • Gostimsky, S.A., Kokaeva, Z.G., and Konovalov, F.A., Studying plant genome variation using molecular markers, Russ. J. Genet., 2005, vol. 41, no. 4, pp. 378–388.

    Article  CAS  Google Scholar 

  • He, F., Kang, D., Ren, Y., et al., Genetic diversity of the natural populations of Arabidopsis thaliana in China, Heredity, 2007, vol. 99, pp. 423–431.

    Article  CAS  PubMed  Google Scholar 

  • Jiang, C., Mithani, A., Gan, X., et al., Regenerant Arabidopsis lineages display a distinct genome-wide spectrum of mutations conferring variant phenotypes, Current Biol., 2011, vol. 21, pp. 1385–1390.

    Article  CAS  Google Scholar 

  • Keathley, D.E. and Scholl, R.L., Chromosomal heterogeneity of Arabidopsis thaliana anther callus, regenerated shoots and plants, Z. Pflanzenphysiol., 1983, vol. 112, pp. 247–255.

    Article  Google Scholar 

  • Kokaeva, Z.G., Bobrova, V.K., Val’ekho-Roman, K.M., et al., RAPD analysis of the somaclonal and intercultivar variability in peas, Dokl. Biol. Sci., 1997, vol. 355, pp. 369–371.

    Google Scholar 

  • Kondorosi, E., Roudier, F., and Gendreau, E., Plant cellsize control: growing by ploidy, Curr. Opin. Plant Biol., 2000, vol. 3, pp. 488–492.

    Article  CAS  PubMed  Google Scholar 

  • Kozyrenko, M.M., Artyukova, E.V., Lauve, L.S., et al., Genetic variability of callus lines of ginseng Panax ginseng, Biotekhnologiya, 2001, no. 1, pp. 19–26.

    Google Scholar 

  • Kuznetsova, O.I., Ash, O.A., and Gostimsky, S.A., The effect of the duration of callus culture on the accumulation of genetic alterations in pea Pisum sativum L., Russ. J. Genet., 2006, vol. 42, no. 5, pp. 555–562.

    Article  CAS  Google Scholar 

  • Labra, M., Vannini, C., Grassi, F., et al., Genomic stability in Arabidopsis thaliana transgenic plants obtained by floral dip, Theor. Appl. Genet., 2004, vol. 109, pp. 1512–1518.

    Article  CAS  PubMed  Google Scholar 

  • Melaragno, J.E., Mehrotra, B., and Coleman, A.W., Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis, Plant Cell, 1993, vol. 5, pp. 1661–1668.

    Article  PubMed Central  PubMed  Google Scholar 

  • Moller, E.M., Bahnweg, G., Sandermann, H., and Geiger, H.H., A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues, Nucleic Acids Res., 1992, vol. 20, pp. 6115–6116.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Nei, M. and Li, W.H., Mathematical model for studying genetic variation in terms of restriction endonucleases, Proc. Natl. Acad. Sci. U.S.A., 1979, vol. 76, pp. 5273–5296.

    Article  Google Scholar 

  • Nosov, A.V., Shevyreva, T.A., Trofimova, M.S., et al., Protoplasts of plant cells as an object of physiological, biochemical, and molecular genetic studies, in Molekulyarnogeneticheskie i biokhimicheskie metody v sovremennoi biologii rastenii (Molecular Genetic and Biochemical Methods in Modern Plant Biology), Kuznetsov, Vl.V., Kuznetsov, V.V., and Romanov, G.A., Ed., Moscow: BINOM, Labor. Znanii, 2012, pp. 403–423.

    Google Scholar 

  • Osipova, E.S., Koveza, O.V., Troitskij, A.V., et al., Analysis of specific RAPD and ISSR fragments in maize (Zea mays L.) somaclones and development of SCAR markers on their basis, Russ. J. Genet., 2003, vol. 39, no. 12, pp. 1412–1419.

    Article  CAS  Google Scholar 

  • Polanco, M.C. and Ruiz, M.L., AFLP analysis of somaclonal variation in Arabidopsis thaliana regenerated plants, Plant Sci., 2002, vol. 162, pp. 817–824.

    Article  CAS  Google Scholar 

  • Sangwan, R.S., Bourgeois, Y., Dubois, F., and Sangwan-Norreel, B.S., In vitro regeneration of Arabidopsis thaliana from cultured zygotic embryos and analysis of regenerants, J. Plant Physiol., 1992, vol. 140, pp. 588–595.

    Article  CAS  Google Scholar 

  • Shenk, R.U. and Hildebrandt, A., Medium and techniques for induction and growth of monocotyledonous and dicotyledonous plant sell cultures, Can. J. Bot., 1972, vol. 50, pp. 199–204.

    Article  Google Scholar 

  • Soneli, J.R., Rao, P.S., and Mhatre, M., Suitability of RAPD for analyzing spined and spineless variant regenerants of pineapple (Ananas comosus L., Merr.), Plant Mol. Biol., 2002, vol. 20, pp. 307a–307i.

    Article  Google Scholar 

  • Sugimoto-Shirasu, K. and Roberts, K., “Big it up”: endoreduplication and cell-size control in plants, Curr. Opin. Plant Biol., 2003, vol. 6, pp. 544–553.

    Article  CAS  PubMed  Google Scholar 

  • Taylor, P.W.J., Fraser, T.A., Ko, H.-L., and Henry, R.J., RAPD analysis of sugarcane during tissue culture, Curr. Iss. Plant Molec. Cell Biol., 1995, pp. 241–246.

    Chapter  Google Scholar 

  • Zoriniants, S.E., Nosov, A.V., Monforte-Gonzalez, M., et al., Variation of nuclear dna content during somatic embryogenesis and plant regeneration of Coffea arabica L. using cytophotometry, Plant Sci., 2003, vol. 164, pp. 141–146.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to K. A. Sedov.

Additional information

Original Russian Text © K.A. Sedov, A.A. Fomenkov, A.I. Solov’yova, A.V. Nosov, Yu.I. Dolgikh, 2014, published in Izvestiya Akademii Nauk, Seriya Biologicheskaya, 2014, No. 6, pp. 565–572.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Sedov, K.A., Fomenkov, A.A., Solov’yova, A.I. et al. The level of genetic variability of cells in prolonged suspension culture of Arabidopsis thaliana . Biol Bull Russ Acad Sci 41, 493–499 (2014). https://doi.org/10.1134/S1062359014060107

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1062359014060107

Keywords

Navigation