Abstract
As a method of post-transcriptional gene silencing (PTGS), virus-induced gene silencing (VIGS) became a powerful tool for the study of gene function in plants. Current researches are focused on unraveling the mechanisms of PTGS, finding novel viral vectors and new infection methods in order to broaden the host species spectrum, and establishing the new reporter gene system of VIGS to demonstrate gene silencing, as well as developing the high-throughput silencing for genomic scale research. The aim of this review is to bring together recent advances of VIGS, an attractive method, for understanding it in the study of plants.
Similar content being viewed by others
Abbreviations
- dsRNA:
-
double-stranded RNA
- GFP:
-
green fluorescent protein gene
- PDS:
-
phytoene desaturase gene
- PTGS:
-
post-transcriptional gene silencing
- RDRP:
-
RNA-dependent RNA polymerase
- RNAi:
-
RNA interference
- TRV:
-
tobacco rattle virus
- VIGS:
-
virus-induced gene silencing
References
Fu, D.Q., Zhu, B.Z., Zhu, H.L., Jiang, W.B., and Luo, Y.B., Virus-Induced Gene Silencing in Tomato Fruit, Plant J., 2005, vol. 43, pp. 299–308.
Kumagai, M.H., Donson, J., Della-Cioppa, G., Harvey, D., Hanley, K., and Grill, L.K., Cytoplasmic Inhibition of Carotenoid Biosynthesis with Virus-Derived RNA, Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 1679–1683.
Cai, X.Z., Xu, Q.F., Wang, C.C., and Zheng, Z., Development of a Virus-Induced Gene-Silencing System for Functional Analysis of the RPS2-Dependent Resistance Signalling Pathways in Arabidopsis, Plant Mol. Biol., 2006, vol. 62, pp. 223–232.
Hein, I., Barciszewska-Pacak, M., Hrubikova, K., Williamson, S., Dinesen, M., Soenderby, I.E., Sundar, S., Jarmolowski, A., Shirasu, K., and Lacomme, C., Virus-Induced Gene Silencing-Based Functional Characterization of Genes Associated with Powdery Mildew Resistance in Barley, Plant Physiol., 2005, vol. 138, pp. 2155–2164.
Constantin, G.D., Krath, B.N., MacFarlane, S.A., Nicolaisen, M., Johansen, I.E., and Lund, O.S., Virus-Induced Gene Silencing as a Tool for Functional Genomics in a Legume Species, Plant J., 2004, vol. 40, pp. 622–631.
Fofana, I.B., Sangare, A., Collier, R., Taylor, C., and Fauquet, C.M., A Geminivirus-Induced Gene Silencing System for Gene Function Validation in Cassava, Plant Mol. Biol., 2004, vol. 56, pp. 613–624.
Meins, F.J., Si-Ammour, A., and Blevins, T., RNA Silencing Systems and Their Relevance to Plant Development, Annu. Rev. Cell. Dev. Biol., 2005, vol. 21, pp. 297–318.
Napoli, C., Lemieux, C., and Jorgensen, R., Introduction of a Chimeric Chalcone Synthase Gene into Petunia Results in Reversible Co-Suppression of Homologous Genes in Trans, Plant Cell, 1990, vol. 2, pp. 279–289.
Cogoni, C. and Macino, G., Isolation of Quelling-Defective (qde) Mutants Impaired in Posttranscriptional Transgene-Induced Gene Silencing in Neurospora crassa, Proc. Natl. Acad. Sci. USA, 1997, vol. 94, pp. 10 233–10 238.
Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E., and Mello, C.C., Potent and Specific Genetic Interference by Double-Stranded RNA in Caenorhabditis elegans, Nature, 1998, vol. 391, pp. 806–811.
Hamilton, A., Voinnet, O., Chappell, L., and Baulcombe, D., Two Classes of Short Interfering RNA in RNA Silencing, EMBO J., 2002, vol. 21, pp. 4671–4679.
Tang, G., Reinhard, B.J., Bartel, D.P., and Zamore, P.D., A Biochemical Framework for RNA Silencing in Plants, Genes Dev., 2003, vol. 17, pp. 49–63.
Waterhouse, P.M., Wang, M.B., and Finnegan, E.J., Role of Short RNAs in Gene Silencing, Trends Plant Sci., 2001, vol. 6, pp. 297–301.
Baulcombe, D., RNA Silencing in Plants, Nature, 2004, vol. 431, pp. 356–363.
Gazzani, S., Lawrenson, T., Woodward, C., Headon, D., and Sablowski, R., A Link between mRNA Turnover and RNA Interference in Arabidopsis, Science, 2004, vol. 306, pp. 1046–1048.
Muangsan, N., Beclin, C., Vaucheret, H., and Robertson, D., Geminivirus VIGS of Endogenous Genes Requires SGS2/SDE1 and SGS3 and Defines a New Branch in the Genetic Pathway for Silencing in Plants, Plant J., 2004, vol. 38, pp. 1004–1014.
Tijsterman, M., Ketting, R.F., and Plasterk, R.H.A., The Genetics of RNA Silencing, Annu. Rev. Genet., 2002, vol. 36, pp. 489–519.
Hannon, G.J., RNA Interference, Nature, 2002, vol. 418, pp. 244–251.
Ruiz, M.T., Voinnet, O., and Baulcombe, D.C., Initiation and Maintenance of Virus-Induced Gene Silencing, Plant Cell, 1998, vol. 10, pp. 937–946.
Ratcliff, F., Martin-Hernandez, A.M., and Baulcombe, D., Tobacco Rattle Virus as a Vector for Analysis of Gene Function by Silencing, Plant J., 2001, vol. 25, pp. 237–245.
Burch-Smith, T.M., Anderson, J.C., Martin, G.B., and Dinesh-Kumar, S.P., Applications and Advantages of Virus-Induced Gene Silencing for Gene Function Studies in Plants, Plant J., 2004, vol. 39, pp. 734–746.
Liu, Y., Schiff, M., and Dinesh-Kumar, S.P., Virus-Induced Gene Silencing in Tomato, Plant J., 2002, vol. 31, pp. 777–786.
Liu, Y., Schiff, M., Marathe, R., and Dinesh-Kumar, S.P., Tobacco Rar1, EDS1 and NPR1/NIM1 Like Genes Are Required for N-Mediated Resistance to Tobacco Mosaic Virus, Plant J., 2002, vol. 30, pp. 415–429.
Dominique, R., VIGS Vectors for Gene Silencing: Many Targets, Many Tools, Annu. Rev. Plant Biol., 2004, vol. 55, pp. 495–519.
Benedito, V.A., Visser, P.B., Angenent, G.C., and Krens, F.A., The Potential of Virus-Induced Gene Silencing for Speeding Up Functional Characterization of Plant Genes, Gen. Mol. Res., 2004, vol. 3, pp. 323–341.
Gossele, V., Fache, I., Meulewaeter, F., Cornelissen, M., and Metzlaff, M., SVISS — a Novel Transient Gene Silencing System for Gene Function Discovery and Validation in Tobacco Plants, Plant J., 2002, vol. 32, pp. 859–866.
Ramachandran, V., Padmanabhan, C., and Claude, M.F., Geminiviruses and RNA Silencing, Trends Plant Sci., 2005, vol. 10, pp. 144–151.
Kjemtrup, S., Sampson, K.S., Peele, C.G., Nguyen, L.V., Conkling, M.A., Thompson, W.F., and Robertson, D., Gene Silencing from Plant DNA Carried by a Geminivirus, Plant J., 1998, vol. 14, pp. 91–100.
Turnage, M.A., Muangsan, N., Peele, C.G., and Robertson, D., Geminivirus-Based Vectors for Gene Silencing in Arabidopsis, Plant J., 2002, vol. 30, pp. 107–114.
Tao, X. and Zhou, X., A Modified Viral Satellite DNA That Suppresses Gene Expression in Plants, Plant J., 2004, vol. 38, pp. 850–860.
Naylor, M., Reeves, J., Cooper, J.I., Edwards, M.L., and Wang, H., Construction and Properties of a Gene-Silencing Vector Based on Poplar Mosaic Virus (Genus Carlavirus), J. Virol. Meth., 2005, vol. 124, pp. 27–36.
Holzberg, S., Brosio, P., Gross, C., and Pogue, G.P., Barley Stripe Mosaic Virus-Induced Gene Silencing in a Monocot Plant, Plant J., 2002, vol. 30, pp. 315–327.
Scofield, S.R., Huang, L., Brandt, A.S., and Gill, B.S., Development of a Virus-Induced Gene-Silencing System for Hexaploid Wheat and Its Use in Functional Analysis of the Lr21-Mediated Leaf Rust Resistance Pathway, Plant Physiol., 2005, vol. 138, pp. 2165–2173.
Peele, C., Jordan, C.V., Muangsan, N., Turnage, M., Egelkrout, E., Eagle, P., Hanley-Bowdoin, L., and Robertson, D., Silencing of a Meristematic Gene Using Geminivirus-Derived Vectors, Plant J., 2001, vol. 27, pp. 357–366.
Vance, V. and Vaucheret, H., RNA Silencing in Plants-Defense and Counterdefense, Science, 2001, vol. 292, pp. 2277–2280.
Guo, H.S. and Ding, S.W., A Viral Protein Inhibits the Long Range Signaling Activity of the Gene Silencing Signal, EMBO J., 2001, vol. 21, pp. 398–407.
Thomas, C.L., Jones, L., Baulcombe, D.C., and Maule, A.J., Size Constraints for Targeting Post-Transcriptional Gene Silencing and for Using RNA-Directed Methylation in Nicotiana bethamiana Using a Potato Virus X Vector, Plant J., 2001, vol. 25, pp. 417–425.
Lu, R., Malcuit, I., Moffett, P., Ruiz, M.T., Peart, J., Wu, A.J., Rathjen, J.P., Bendahmane, A., Day, L., and Baulcombe, D.C., High Throughput Virus-Induced Gene Silencing Implicates Heat Shock Protein 90 in Plant Disease Resistance, EMBO J., 2003, vol. 22, pp. 5690–5699.
Orzaez, D., Mirabel, S., Wieland, W.H., and Granell, A., Agroinjection of Tomato Fruits: A Tool for Rapid Functional Analysis of Transgenes Directly in Fruit, Plant Physiol., 2006, vol. 140, pp. 3–11.
Manning, K., Tor, M., Poole, M., Hong, Y., Thompson, A.J., King, G.J., Giovannoni, J.J., and Seymour, G.B., A Naturally Occurring Epigenetic Mutation in a Gene Encoding an SBP-Box Transcription Factor Inhibits Tomato Fruit Ripening, Nat. Genet., 2006, vol. 38, pp. 948–952.
Johnson, J., The Relation of Air Temperature to the Mosaic Disease of Potatoes and Other Plants, Phytopathology, 1992, vol. 12, pp. 438–440.
Gerik, J.S., Duffus, J.E., Perry, R., Stenger, D.C., and van Maren, A.F., Etiology of Tomato Plant Decline in the California Desert, Phytopathology, 1990, vol. 80, pp. 1352–1356.
Fu, D.Q., Zhu, B.Z., Zhu, H.L., Zhang, H.X., Xie, Y.H., Jiang, W.B., Zhao, X.D., and Luo, Y.B., Enhancement of Virus-Induced Gene Silencing in Tomato by Low Temperature and Low Humidity, Mol. Cells, 2006, vol. 21, pp. 153–160.
Hiriart, J.B., Aro, E.M., and Lehto, K., Dynamics of the VIGS-Mediated Chimeric Silencing of the Nicotiana benthamiana ChlH Gene and of the Tobacco Mosaic Virus Vector, Mol. Plant-Microbe Interact., 2003, vol. 16, pp. 99–106.
Chen, J.C., Jiang, C.Z., Gookin, T., Hunter, D., Clark, D., and Reid, M., Chalcone Synthase as a Reporter in Virus-Induced Gene Silencing Studies of Flower Senescence, Plant Mol. Biol., 2004, vol. 55, pp. 521–530.
Chen, J.C., Jiang, C.Z., and Reid, M., Silencing a Prohibitin Alters Plant Development and Senescence, Plant J., 2005, vol. 44, pp. 16–24.
Hudson, A., Carpenter, R., Doyle, R., and Coen, E.S., Olive: A Key Gene Required for Chlorophyll Biosynthesis in Antirrhinum majus, EMBO J., 1993, vol. 12, pp. 3711–3719.
Kruse, E., Mock, H.P., and Grimm, B., Isolation and Characterization of Tobacco (Nicotiana tabacum) cDNA Clones Encoding Proteins Involved in Magnesium Chelation into Protoporphyrin IX, Plant Mol. Biol., 1997, vol. 35, pp. 1053–1056.
Ahn, C.S., Lee, J.H., Reum, H.A., Kim, W.T., and Pai, H.S., Prohibitin Is Involved in Mitochondrial Biogenesis in Plants, Plant J., 2006, vol. 46, pp. 658–667.
Yang, C.W., Gonzalez-Lamothe, R., Ewan, R.A., Rowland, O., Yoshioka, H., Shenton, M., Ye, H., O’Donnell, E., Jones, J.D., and Sadanandom, A., The E Ubiquitin Ligase Activity of Arabidopsis PLANT U-BOX17 and Its Functional Tobacco Homolog ACRE276 Are Required for Cell Death and Defense, Plant Cell, 2006, vol. 18, pp. 1084–1098.
Jones, L., Keining, T., Eamens, A., and Vaistij, F.E., Virus-Induced Gene Silencing of Argonaute Genes in Nicotiana benthamiana Demonstrates That Extensive Systemic Silencing Requires Argonaute1-Like and Argonaute4-Like Genes, Plant Physiol., 2006, vol. 141, pp. 598–606.
Fitzmaurice, P., Holzberg, S., Lindbo, J.A., Padgett, H.S., and Palmer, K.E., Epigenetic Modification of Plants with Systemic RNA Viruses, Omics, 2002, vol. 6, pp. 137–151.
Author information
Authors and Affiliations
Corresponding author
Additional information
This text was submitted by the authors in English.
Rights and permissions
About this article
Cite this article
Shao, Y., Zhu, H.L., Tian, H.Q. et al. Virus-induced gene silencing in plant species. Russ J Plant Physiol 55, 168–174 (2008). https://doi.org/10.1134/S1021443708020027
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1021443708020027