Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis

ABSTRACT Hepatic failure is an important risk factor for poor outcome in septic patients. Using a chemical tagging workflow and high-resolution mass spectrometry, we demonstrate that rapid proteome remodeling of the vascular surfaces precedes hepatic damage in a murine model of Staphylococcus aureus sepsis. These early changes include vascular deposition of neutrophil-derived proteins, shedding of vascular receptors, and altered levels of heparin/heparan sulfate-binding factors. Modification of endothelial heparan sulfate, a major component of the vascular glycocalyx, diminishes neutrophil trafficking to the liver and reduces hepatic coagulopathy and organ damage during the systemic inflammatory response to infection. Modifying endothelial heparan sulfate likewise reduces neutrophil trafficking in sterile hepatic injury, reflecting a more general role of heparan sulfate contribution to the modulation of leukocyte behavior during inflammation.

nutrient delivery to vital organs and subsequent organ failure (1)(2)(3). Historically, sepsis treatments aimed at inhibition of systemic inflammation have little clinical success (4,5). Understanding the mechanistic ties between vascular dysfunction and organ failure in sepsis may lead to improved organ support and better outcomes (5). Vascular surfaces are covered by a layer of glycolipids, glycoproteins, glycosaminoglycans (GAGs) and proteoglycans, collectively termed the vascular glycocalyx (VGC) (6)(7)(8). Sepsis dramatically alters the structural and molecular composition of the VGC, promoting leukocyte adherence, vascular dysfunction, and inflammation (9)(10)(11)(12)(13). Remodeling of the VGC during sepsis is partially driven by upregulation of endogenous glycosidases and proteases, resulting in shedding of glycan fragments and protein ectodomains that can fuel dysregulated inflammatory loops by acting as damage-associated molecular patterns (DAMPs) (9,14,15).
Given their frontline location, the collective glycoproteome and glycome that make up the VGC help orchestrate vascular homeostasis and immunity. Unfortunately, direct examination of VGC molecular composition has been largely performed in the context of isolated endothelial cells, immortalized cell lines or shed VGC material detected in circulation or urine (16). The absence of the normal architecture of the vascular niche in cultured cells limits the usefulness of in vitro models for studying VGC remodeling (17). We recently constructed an organ-specific in vivo proteome atlas of the murine VGC and showed that it changes significantly during sepsis induced by the leading human invasive pathogen, Staphylococcus aureus (13). Proteome changes during bacterial challenge were tightly correlated with tissue damage, suggesting a link between vascular dysfunction and organ failure. Whether vascular proteome remodeling precedes tissue damage or is just a consequence of generalized organ failure is an important question that remains to be addressed in this sepsis model system.
S. aureus sepsis leads to pathogen accumulation primarily in the liver (13,18), where tissue-resident macrophage Kupffer cells filter circulating bacteria (19,20), stimulating a wave of infiltrating neutrophils in the sinusoids that attempt to clear the infection. Activated neutrophils release neutrophil extracellular traps (NETs), triggering an immunothrombotic response that helps to trap and ensnare bacteria, although at a significant inflammatory cost (18,21). In sepsis, the hepatic neutrophilic response progresses to a vasculopathic and hypercoagulative syndrome and results in blood vessel occlusion, necrosis, and liver failure (13,18). Neutrophil trafficking into the liver during nonsterile inflammation partially depends on neutrophil expression of CD44 that tightly binds to sinusoidal hyaluronan (HA), an abundant GAG in the hepatic vascular glycocalyx (18,22,23). Notably, neutrophil chemotaxis to the liver during sterile hepatic inflammation is mostly mediated by an integrindependent mechanism (23), and understanding which VGC components regulate this neutrophil trafficking might inform pharmacological strategies to protect the organs during sepsis.
Heparan sulfate (HS), a type of sulfated GAG, is a major VGC component that impacts multiple aspects of vascular inflammation and sepsis (24). Endothelial HS participates in the formation of chemokine gradients and chemokine transcytosis that attract leukocytes toward sites of inflammation (25)(26)(27)(28)(29)(30)(31)(32)(33) and modulate neutrophil extravasation by interacting with selectins during neutrophil rolling in peripheral tissues (26,30). Exogenous HS oligosaccharides block neutrophil influx and inflammation in acetaminophen-induced liver failure (34), while intravenous injection of the recombinant HS-binding domain of CXCL9 competes with the endogenous chemokine for VGC binding and blunts neutrophil trafficking (35)(36)(37). In this report, we show that proteins that bind HS are significantly enriched in the hepatic VGC during S. aureus sepsis. Genetic modification of the fine structure of endothelial HS diminishes neutrophil trafficking and subsequent pathological thrombosis in the liver vasculature. Together, HS and HA play important roles in neutrophil trafficking in the liver.

RESULTS
Previously, we characterized VGC remodeling after S. aureus challenge to ascertain its composition during severe hepatic damage and pathology (13), but these studies were performed at 24 h postinfection. To characterize VGC remodeling during the initial stages of liver inflammation (18), we applied a similar chemical tagging and proteomics workflow to a murine model of S. aureus sepsis 6 h postinfection. Briefly, systemic perfusion of the mouse vasculature using a sulfo-N-hydroxysuccinimide (NHS)-biotin solution was performed to tag proteins exposed to the vascular flow and to facilitate downstream streptavidin affinity purification and proteomic characterization (13). The vascular cell surface proteome of the murine liver was significantly altered at this earlier time point ( Fig. 1A; Table S1). In total, 5,753 proteins were identified and quantified, of which 647 were significantly changed upon infection. Early signs of inflammation included higher levels of the serum amyloid proteins (Saa1-3) and C-reactive protein, as well as vascular expression of Toll-like receptor 2 (Tlr2), which is known to mediate host responses to Gram-positive bacteria through peptidoglycan and lipoteichoic acid interactions. Neutrophil-derived proteins such as myeloperoxidase (Mpo), neutrophil elastase (ELANE), matrix metallopeptidase 9 (Mmp9), and neutrophil gelatinase-associated lipocalin (Lcn2) were among the most accentuated proteins in our data sets (Fig. 1A), suggesting that neutrophil influx and NET formation start early during infection and precede organ damage. Vascular activation was also indicated by increased Pselectin (Selp), thrombospondin 1 (Tsp1), and angiopoietin 2 (ANGPT2) levels, coupled to decreased presentation of vascular receptors such as the vascular growth factor receptor 2 (VEGFR2). Vascular proteome changes also included alterations in various antimicrobial factors, cytokines, and chemokines. Principal-component analysis (PCA) of the proteome fraction clearly separated infected from uninfected samples (Fig. 1B), and molecular functions for receptor activation and binding, endopeptidase activity, and heparin/HS binding proteins were highly enriched in the hepatic vasculature (Fig. 1C). The latter group is notable since HS is directly involved in many critical receptor-ligand interactions during inflammatory responses to modulate neutrophil trafficking (38).
To examine how vascular HS affects liver pathology during S. aureus infection, the bifunctional HS N-deacetylase/N-sulfotransferase 1 (Ndst1) gene was inactivated by driving Cre recombinase expression in endothelial and myeloid cells through the Tie2 (Tek) promoter (Ndst1 f/f Tie2Cre) (39). We previously reported that inactivation of Ndst1 results in significantly undersulfated HS in endothelial cells, thereby disrupting native HS-protein interactions and biological responses (26,40). Partial desulfation of the chains occurs because most tissues also express Ndst2 (41). Removal of both genes or systemic inactivation of Ndst1 leads to embryonic or perinatal lethality, respectively, thus requiring the use of conditional mutants (42)(43)(44).
S. aureus sepsis was induced in Ndst1 f/f Tie2Cre1 and wild-type (Ndst1 f/f Tie2Cre-) litter mate control mice, and CFU were enumerated in several tissues at multiple time points. While about 50 to 75% of the animals succumb to this infectious challenge within 48 h, no differences in general behavior or outward signs of distress between mutant and wild-type mice were noted in the first 12 h. S. aureus bacteremia and organ colonization were readily detectable at 6 h postinfection ( Fig. 2A to C). Consistent with previous findings, the liver harbored the highest CFU burden early in infection (6 h; Fig. 2C) (13,18). Although median levels of bacteremia fluctuated only slightly over time ( Fig. 2A), the median organ CFU counts increased 24-fold in the kidney and 5-fold in the liver by 24 h postinfection in Ndst1 f/f Tie2Cre-animals. In contrast, Ndst1 f/f Tie2Cre1 mice did not exhibit such a dramatic increase in liver CFU over the time course (#2fold on average) (Fig. 2C). Ndst1 f/f Tie2Cre-and Ndst1 f/f Tie2Cre1 mice had similar levels of bacteremia ( Fig. 2A) and similar increases in kidney CFU (Fig. 2B), indicating that the overall degree of HS sulfation selectively impacts S. aureus bacterial load in the liver.
Following S. aureus challenge, the liver develops significant coagulopathy that occludes its vasculature, leading to subsequent grossly apparent necrosis of the surrounding parenchyma (Fig. 2D) (13). In Ndst1 f/f Tie2Cre-mice, liver thromboses began to develop early after infection with influxing neutrophils, consistent with the findings from the vascular proteomic analysis (Fig. 2E) (45,46). By 12 h postinfection, thrombus formation was readily apparent (Fig. 2E, red arrowheads), with neutrophils surrounding the thrombi, and evidence of hepatic necrosis (Fig. 2E, yellow arrowheads). By 24 h postinfection, many vessels were completely occluded with corresponding areas of coagulative necrosis and intralesional bacterial colonies (Fig. 2E, blue arrowhead), paralleling the large increase in S. aureus CFU at this time point (Fig. 2C). Strikingly, Ndst1 f/f Tie2Cre1 mice exhibited fewer grossly visible necrotic lesions 24 h postinfection (Fig. 2D). Scoring of liver histopathology showed reduced damage at 24 h postinfection in Ndst1 f/f Tie2Cre1 mice ( Fig. 2E and F). Serum markers of liver damage coincided with liver pathology. Ndst1 f/f Tie2Cre-mice had large increases in serum alanine aminotransferase (ALT) and aspartate aminotransferase (AST) at 12 and 24 h postinfection ( Fig. 2G and H), whereas ALT/AST elevations were significantly smaller in Ndst1 f/f Tie2Cre1 mice ( Fig. 2G and H). Reducing sulfation of endothelial HS did not affect the levels of serum markers of kidney damage, again indicative of selective activity toward the liver (Fig. S1A).
Tie2-driven gene inactivation can result in recombination of "floxed" genes in the hematopoietic compartment in addition to the endothelium (47), which is an important consideration, as both myeloid and platelet lineages contribute to S. aureusinduced liver damage (48). To evaluate the potential contribution of myeloid-and platelet-specific Ndst1 inactivation to the liver phenotype, Ndst1 was selectively inactivated using a combination of LysMCre and PF4Cre drivers (Ndst1 f/f LysM/PF4Cre). Ndst1 f/f LysM/PF4Cre1 mice had comparable levels of liver CFU and plasma ALT and AST as Ndst1 f/f LysM/PF4Cre-mice at 24 h postinfection ( Fig. S1B to D), indicating that reduction of endothelial HS sulfation, and not of myeloid HS, drives the hepatic phenotype in the model.
Neutrophilic infiltration is required for the hepatic damage characteristic of S. aureus sepsis (18). Neutrophils bind to HA in the sinusoidal glycocalyx, leading to their sequestration to the liver vasculature during infection, promoting inflammation and vascular coagulation (18,22). In contrast, neutrophil trafficking in the peripheral vasculature is modulated by endothelial HS (26). To examine if endothelial HS also participates in hepatic leukocyte trafficking during sepsis, neutrophils and monocytes were and B), consistent with trafficking deficiencies previously observed in the skin of these mice using air pouch models (26). Monocytes also infiltrated the liver, but the extent of infiltration did not differ between mutant and wild-type mice (Fig. S2B). Circulating neutrophil and monocyte counts were also comparable in mutant and wild-type mice, in both uninfected and infected animals ( Fig. S2C and D); thus, differences in liver neutrophil counts did not derive from differences in circulating neutrophil and monocyte abundance. Immunofluorescent staining of liver sections revealed cells in the sinusoids of Ndst1 f/f Tie2Cre-mice that stained strongly for myeloperoxidase (MPO) (Fig. 3C and D), consistent with infiltration and sequestration of neutrophils in the liver sinusoids (18). MPO-stained cells (neutrophils) were not as prominent in Ndst1 f/f Tie2Cre1 liver, indicative of fewer infiltrating neutrophils ( Fig. 3E and F). This reduction of neutrophil infiltration likely spares Ndst1 f/f Tie2Cre1 mice from severe hepatoxicity (Fig. 2), similar to how blocking neutrophil infiltration through CD44 inactivation reduces S. aureusinduced hepatic damage (18). Finally, we used intravital microscopy (IVM) to measure the kinetics of neutrophil trafficking immediately following infection. GFP-positive S. aureus injected intravenously (i.v.) was visible and adherent in the liver sinusoids within seconds of injection (Video S1). By 20 min postinfection, bacteria ceased to accumulate in the liver (Video S1). The majority of bacteria adhered to resident Kupffer cells (49) and neutrophils. Some neutrophils appeared to phagocytose S. aureus and continued to traffic through the liver vasculature (Video S2). Ndst1 f/f Tie2Cre-mice exhibited higher neutrophil counts a few minutes after injection that increased over the first hour of infection ( Fig. 4A to C; Video S3). In contrast, Ndst1 f/f Tie2Cre1 mice showed only a marginal increase in neutrophil counts during the first hour after infection (Fig. 4D to F; Video 3). The rate of neutrophil recruitment in Ndst1 f/f Tie2Cre1 mice was ;50% the rate observed in Ndst1 f/f Tie2Cre-mice ( Fig. 4G and H), consistent with the reduced neutrophil counts observed at 6 h postinfection by flow cytometry (Fig. 3B). Initial S. aureus counts were similar and declined at the same rate in both mutant and wild-type animals (Fig. 4I), indicating that initial bacterial burden does not depend upon vascular HS status.
Neutrophil trafficking during sterile inflammation in the liver is based upon an integrin-dependent mechanism and not on HA (23). To determine if vascular HS also modulates neutrophil trafficking in sterile inflammation, a focal sterile injury was applied to the livers of Ndst1 f/f Tie2Cre mice with a two-photon laser, and neutrophils were tracked using IVM. Immediately following sterile injury, neutrophils were attracted to the injury site in Ndst1 f/f Tie2Cre-mice ( Fig. 5A and C; Video S4), but neutrophil trafficking was blunted in Ndst1 f/f Tie2Cre1 mice ( Fig. 5B and C; Video S4). Endothelial HS acts as a ligand for L-selectin during neutrophil rolling (26,30). However, altering endothelial HS did not change trafficking characteristics such as mean speed, speed variance, or track Hepatic Neutrophil Trafficking ® straightness during sterile liver inflammation, suggesting that L-selectin-mediated tethering might not be affected in the Ndst1 f/f Tie2Cre1 mutant (Fig. 5D to G).

DISCUSSION
In summary, our findings show that S. aureus induces dramatic compositional changes in the liver VGC within 6 h of infection, consistent with altered neutrophil infiltration, endothelial activation, and alterations in the vascular HS interactome. Modifying the fine structure of HS in the VGC mitigates neutrophil infiltration and reduces subsequent vascular inflammation and hepatic damage. HS sulfation does not appear to impact the initial colonization of hepatic tissues by S. aureus, as bacterial burden in the liver was the same immediately after infection (Fig. 4I). However, at 24 h postinfection, Ndst1 f/f Tie2Cre1 mice exhibited lower S. aureus burden in the liver (Fig. 2B). In Ndst1 f/f Tie2Cre-mice, increased neutrophil infiltration in the liver drives vascular coagulopathy, leading to occlusion of the blood vessels and subsequent tissue necrosis, which could potentially create a more conducive environment for bacterial growth. Further studies are needed to support this hypothesis, among other possible inflammatory changes that may occur in the septic liver after vascular HS modification. For example, HS binds to histones in NETs, which are both proinflammatory and promote coagulation (18,45,50). Importantly, our work suggests that vascular HS participates in the attraction of neutrophils to the liver in bacterial sepsis and in sterile inflammation. However, we have found no connection between the liver phenotype and infection-induced mortality in Ndst1Tie2Cre1 mice. Many factors contribute to the lethality of sepsis, and we suspect that lethality may be associated with stress and failure in nonhepatic systems later in infection. Our studies provide insight into early changes in the VGC and the role of the VGC in acute hepatic inflammation and coagulopathy.
Additional studies are needed to understand the mechanism of HS-dependent neutrophil recruitment in the liver. Although Ndst1 f/f Tie2Cre1 mice have less thrombotic lesions in the liver during S. aureus infection (Fig. 2E), we hypothesize that the phenotype is downstream of reduced neutrophil influx, as intravascular coagulation parameters are unchanged in Ndst1 f/f Tie2Cre1 mice (26). In peripheral tissues, endothelial HS appears to play three roles in neutrophil recruitment. First, endothelial HS can bind and sequester chemokines, facilitating the formation of chemotactic gradients (38); heparan sulfate proteoglycans (HSPGs) are thought to mediate chemokine transfer across the endothelium from sites of inflammation (26,30), and the HS chains bind to L-selectin on neutrophils (26,30). Thus, we can now extend these earlier studies that showed that altering the structure of HS decreased neutrophil infiltration induced by acute inflammatory challenges to the liver. One would expect endothelial HS modulation would have similar effects in all organs during S. aureus infection, but there are probably other organ-specific responses that modulate infiltration of inflammatory cells, such as specific chemokines and adhesive factors. The acute nature of the infection and infiltration, and the liver's efficient sequestration of a vast majority of circulating S. aureus (18), likely amplifies any inflammatory defects that occur in the liver. Further studies will seek to delve deeper into molecular mechanism(s) by which HS mediates neutrophil migration in the liver in both sterile and nonsterile injuries and how these systems are coordinated with the CD44-HA axis.
Previous studies have shown that Kupffer cells lining the sinusoids quickly filter S. aureus from circulation, leading to an influx of neutrophils in a CD44-dependent mechanism (18). Our work adds additional insight into the bacterial filtration and neutrophil trafficking mechanism. Neutrophils present in the liver sinusoids also directly sequester circulating S. aureus and continue to traffic with captured bacteria, indicating that bacterial filtration from the bloodstream is not solely executed by Kupffer cells. Others studies have shown that platelets bundle bacteria in the bloodstream and boost the activity of professional phagocytes (51), although it is unclear if platelets execute this function in the context of the liver. Nonetheless, filtration of S. aureus from circulation is extremely rapid and occurs within minutes of bacterial injection. Within this time frame, signaling modulated by endothelial HS initiates liver neutrophil accumulation. Although previous studies have indicated that liver neutrophil accumulation occurs 4 h after systemic S. aureus infection (18), the HS-mediated chemotactic signal is functional within minutes of infection. As chemokines are bound to HS and can rapidly signal to neutrophils (10,38), future studies will focus on HS-dependent chemokine signaling in the liver during S. aureus infection.
During S. aureus sepsis, major organs undergo dramatic vascular glycocalyx changes that reflect the organ microenvironment (13). At 24 h postinfection, the liver vasculature is enriched with HA recognition and remodeling proteins (13). However, at 6 h postinfection, the liver vasculature signature is dominated by neutrophil proteins and endothelial activation markers, indicating a temporal dynamic to VGC composition throughout S. aureus sepsis host responses. Characterizing VGC dynamics in critical organs throughout septic responses would yield valuable information about the vascular environment at different stages of the disease. The VGC compositional analyses completed thus far give critical insight into the liver vascular environment during S. aureus sepsis. Expansion of these temporal studies across multiple organs and sepsiscausing agents would give insight into why certain organs are prone to failure in sepsis, as the glycocalyx is critical to vascular function (16). Understanding how the organvascular interface changes in sepsis could provide critical information on how certain organs fail and how to support organs prone to failure, thus promoting positive outcomes in sepsis. Although we demonstrated that proteins associated with the liver VGC change during early sepsis and that endothelial HS plays a role in subsequent hepatic inflammation, other components of the VGC may have changed as well in response to the alteration in HS sulfation. Future efforts will focus on increasing the molecular and temporal resolution of the VGC in sepsis and generating diagnostics and theragnostics that provide information about the health of the organ-vascular interface during sepsis.

MATERIALS AND METHODS
Bacterial strains and preparation. Staphylococcus aureus (strain USA300 TCH1516) was originally isolated from an outbreak in Houston, Texas, and caused severe invasive disease in adolescents (52). S. aureus was routinely grown at 37°C on Todd-Hewitt agar (Difco) or in liquid cultures of Todd-Hewitt broth (THB; Difco) with stirring (200 rpm). Bacteria were inoculated into 5 ml of fresh THB and incubated overnight. An aliquot of the overnight culture (0.4 ml) was inoculated into 6 ml of fresh THB and incubated to an optical density at 600 nm (OD 600 ) of 0.4. Bacteria were sedimented by centrifugation, washed twice with phosphate-buffered saline (PBS), and suspended in PBS at 5 Â 10 8 CFU/ml. S. aureus USA300 TCH1516 constitutively expressing green fluorescent protein (GFP) was cultured using the same method.
Animal studies. Ndst1 f/f transgenic C57bl/6 mice were crossed with Tie2Cre transgenic C57bl/6 mice to generate Ndst1 f/f Tie2Cre mice (26). To generate Ndst1 f/f LysM/PF4Cre mice, B6.129P2-Lyz2 tm1(cre)Ifo /J (LysMCre; Jackson Laboratory) were crossed to Ndst1 f/f transgenic C57BL/6 mice to generate Ndst1 f/f LysMCre mice, and C57BL/6-Tg(Pf4-icre)Q3Rsko/J (PF4Cre; Jackson Laboratory) were crossed to Ndst1 f/f transgenic C57bl/6 mice to generate Ndst1 f/f PF4Cre mice. The Ndst1 f/f LysMCr;Pf4Cre line was generated by crossing PF4Cre and LysMCre mice, as described elsewhere (48). C57BL/6 male and female mice (8 to 10 weeks old) were injected i.v. through the retroorbital sinus with 5 Â 10 7 CFU (0.1 ml) S. aureus. At 24 h postinfection, animals were euthanized with isoflurane and immediately processed for sample collection. CFU in the S. aureus inoculum were enumerated by serial dilution on Todd Hewitt agar plates to ensure consistent CFU dosing across experiments. Animals were housed and bred in individual ventilated cages in a specific-pathogen-free background, in vivaria approved by the Association for Assessment and Accreditation of Laboratory Animal Care located in the School of Medicine, UC San Diego. All experiments were performed in accordance with relevant guidelines and regulations following standards and procedures approved by the UC San Diego Institutional Animal Care and Use Committee (protocols S99127 and S00227M) and the La Jolla Institute for Immunology Department of Laboratory Animal Care (protocol AP00001019).
Blood chemistry and complete blood count. To collect serum for blood chemistry, blood was collected via cardiac puncture and placed in a procoagulant serum tube (BD Microtainer no. 365967) for 4 h at room temperature. Serum was isolated by centrifugation (2,000 Â g for 10 min). All samples were frozen before analysis. Blood chemistry parameters were measured on a Cobas 8000 automated chemistry analyzer (Roche) with a general coefficient of variance of ,5%. For complete blood count, blood was mixed with a citrate-dextrose solution (1:9 vol/vol) (Millipore Sigma; no. C3821) and analyzed on a Hemavet 950FS multispecies hematology system (Drew Scientific, CT) programmed to mouse settings.
Histological analysis. Tissues were submersion-fixed in 10% neutral buffered formalin (Fisher Chemical) for 24 h, followed by 70% ethanol for at least 24 h. The samples were paraffin-embedded and sectioned (3 mm) and stained with hematoxylin/eosin. Sections underwent blinded scoring by a veterinary pathologist to measure liver inflammation and necrosis, with scores ranging from 0 to 4 (4 indicating severe inflammation and necrosis).
Bacterial CFU counts. Organs of interest were placed in a 2-ml tube (Sarstedt; no. 72.693.005) containing 1 ml ice cold PBS and 1-mm-diameter zirconia/silica beads (Biospec Products; no. 11079110z). Samples were homogenized using a MagNA Lyzer (Roche) for 2 min at 6,000 rpm. An aliquot of each organ sample was serially diluted in PBS and plated on Todd-Hewitt agar to enumerate CFU.
Single cell suspension and flow cytometry. Mice were euthanized with isoflurane and immediately perfused at 7 ml/min for 2 min with ice-cold PBS through the left ventricle, with a small cut made in the right ventricle for drainage of perfusate. The left lobe of the liver was isolated from each mouse and minced with scissors in ice-cold petri dishes. Samples were then resuspended in 5 ml of ice-cold Hanks balanced salt solution (HBSS) with Ca 21 /Mg 21 (Thermo Fisher Scientific; no. 14025092) containing 3 mM CaCl 2 in a 50-ml conical tube. The tissue was adjusted to 0.3 units/ml of Liberase TL (Roche; no. 5401020001) and 40 units/ml DNase I (Millipore Sigma; no. D4263) and stirred at 37°C for 30 min at 150 rpm. Digested homogenates were filtered through a 70-mM strainer to make single cell suspensions. Single cell suspensions were centrifuged at 50 Â g for 3 min at 4°C to remove hepatocytes and undigested material. The supernatant was centrifuged at 500 Â g for 10 min, and the pellet was resuspended in 20 ml ammonium chloride potassium lysis buffer for 5 min at 25°C to lyse the remaining red blood cells. After 2 washes in HBSS containing 0.1% bovine serum albumin (BSA) and 0.5 mM EDTA (flow buffer), the cells were counted with a hemocytometer. Cells Immunofluorescence. Organs were harvested and fixed in ice-cold PBS containing 4% paraformaldehyde for 18 to 24 h with gentle end-over-end mixing. Fixed organs were placed in 30% sucrose solution overnight. Saturated organs were then submerged in optimal cutting temperature compound (OCT) (Sakura) and flash-frozen in cassettes submerged in 2-methylbutane chilled with dry ice. Sections (10 mm) were permeabilized and stained with ;1 mg/ml rabbit anti-myeloperoxidase (Abcam; no. ab9535), and 5 mg/ml rat anti-mouse CD68 (Thermo Fisher Scientific; no. 14-0681-82), followed by incubation with goat anti-rabbit AF594 (Thermo Fisher Scientific; no. A11012) and goat anti-rat AF488 (Thermo Fisher Scientific; no. A11006). Nuclei were visualized using mounting medium containing DAPI (49,6-diamidino-2-phenylindole; Thermo Fisher Scientific). Sections were mounted on glass slides under no. 1.5 coverslips. Images were acquired with an inverted Zeiss LSM 880 confocal microscope with FAST AiryScan, using either a 10Â Plan-Apochromat 0.45 NA objective or a 40Â LD LCI Plan-Apochromat 1.2 NA immersion objective as indicated in the figure legend. Images were processed using the in-line AiryScan processing module in Zen Black.
Intravital microscopy. Mice were anesthetized with isoflurane and were kept on a 37°C heating pad throughout the experiment. All images were taken with a Leica SP8 upright confocal DM600 CFS confocal microscope equipped with a resonant scanner via a cover slip-corrected Â25, 0.95 NA water immersion objective (Leica Microsystems, Buffalo Grove, IL). In the sterile injury experiments, mice were injected retroorbitally with 5 ml (2.5 mg) Ly6G-AF647 antibody (Clone 2A8; BioLegend, San Diego, CA) in 100 ml sterile Ca 21 /Mg 21 -free PBS (Gibco, Thermo Fisher Scientific, USA). The abdominal wall was opened with a transverse scission along the costal margin, and the left liver lobe was immobilized against a coverslip with a suction ring (53). Around the suction ring, the wound was covered with sterile wet gauze to mitigate desiccation. An area in the sinusoids with little motion artifact was chosen, and a focal burn injury was applied via 2-s-long illumination with a high-power two-photon laser beam on an ;250 mm 2 area. An ;40,000 mm 2 area with the burned injury centered was imaged in GFP and AF647 channels over 3 h in a time-serial, z-stack scanning mode. In septic injury experiments, the left femoral artery was cannulated with a PE-10 tube and the left liver lobe was exteriorized for confocal imaging as described above. The mouse was injected through the femoral artery cannula with 5 ml (2.5 mg) Ly6G-AF647 (BioLegend; no. 127610) in 100 ml of PBS. Four fields of view with low motion artifact and centered on the sinusoids were selected. Imaging was conducted for 3 h in GFP and Ly6G-AF647 channels in a multiposition, time-serial, z-stack scanning mode. Immediately following imagining initiation, 5 Â 10 7 CFU of GFP expressing S. aureus (described above) suspended in 100 ml Ca 21 / Mg 21 -free PBS were injected into the femoral artery cannula. Videos were analyzed for neutrophil and S. aureus accumulation with Imaris software (Bitplane, Concord, MA). Neutrophils were tracked via applying area modeling on the AF647 signal. Only neutrophils present in 3 consecutive frames were counted. S. aureus was counted via applying spot modeling on the GFP signal.
Systemic chemical perfusions. In vivo biotinylation was conducted as reported (13). Briefly, animals were anesthetized using isoflurane in a closed chamber, and a median sternotomy was performed. The left ventricle of the heart was punctured with a 25-gauge butterfly needle (BD Vacutainer) and a small cut was made in the right atrium to allow draining of perfusion solutions. All perfusion reagents were ice-cold and were infused using a perfusion pump (Fisher Scientific). Blood components were quickly washed out with PBS for 5 min at a rate of 5 ml/min. A solution containing 100 mM EZ-link sulfo-NHS-biotin (Thermo Fisher) in PBS, pH 7.4 was used to perfuse the animals at 3 ml/min for 10 min. Finally, animals were perfused with the quenching solution (50 mM Tris-HCl, pH 7.4) at 3 ml/min for 5 min. Control animals were perfused in the same way but with PBS.
Organ preparations. After in vivo biotinylation, mouse livers were harvested as previously described (13). Briefly, livers were harvested and homogenized using zirconia/silica beads (1 mm diameter; Biospec) in a benchtop MagNA Lyser instrument (Roche). Homogenization buffer contained 5 M urea, 0.25 M NaCl, and 0.1% SDS. Samples were briefly centrifuged at 16,100 Â g for 5 min to sediment insoluble tissue debris. The clear supernatant was transferred to a new tube and further purified by centrifugation through a 0.45-mm filter (Costar/Millipore Sigma; no. CLS8163). Filtrate was collected, and protein concentration in the filtrate was quantified by bicinchoninic acid (BCA) assay (Thermo Scientific) per the manufacturer's instructions and stored at 280°C until further analysis.
Purification of biotinylated proteins. After organ preparation, biotinylated proteins were purified as previously described (13). Briefly, biotinylated proteins were purified from homogenized liver (1 mg protein) using a Bravo AssayMap platform and AssayMap streptavidin cartridges (Agilent). Briefly, cartridges were prewashed with 50 mM ammonium bicarbonate (pH 8), and then samples were loaded. Nonbiotinylated proteins were removed by extensively washing the cartridges with 8 M urea in 50 mM ammonium bicarbonate buffer (pH 8). Cartridges were washed with rapid digestion buffer (Promega; rapid digestion buffer kit), and bound proteins were subjected to on-column digestion using mass spectrometry-grade trypsin/Lys-C rapid digestion enzyme (Promega, Madison, WI) at 70°C for 2 h. Released peptides were desalted in the Bravo platform using AssayMap C 18 cartridges, and the organic solvent was removed by vacuum centrifugation (SpeedVac). Samples were stored at 220°C prior to liquid chromatography tandem mass spectrometry (LC-MS/MS) SWATH (sequential window acquisition of all theoretical fragment ion spectra) analysis.
LC-MS/MS analysis. Peptide analysis was performed on a Q Exactive HF-X mass spectrometer (Thermo Fisher Scientific) connected to an EASY-nLC 1200 ultra-high-performance liquid chromatography system (Thermo Fisher Scientific). Peptides were trapped on precolumn (PepMap100 C 18 3 mm; 75 mm by 2 cm; Thermo Fisher Scientific) and separated on an EASY-Spray column (ES803, column temperature 45°C; Thermo Fisher Scientific). Equilibrations of columns and sample loading were performed per the manufacturer's guidelines. Solvent A was used as stationary phase (0.1% formic acid), and solvent B (mobile phase; 0.1% formic acid, 80% acetonitrile) was used to run a linear gradient from 5% to 38% over 120 min at a flow rate of 350 nl/min. The 44 variable window data-independent acquisition (DIA) method is described in detail in reference 54. Briefly, the mass range for MS1 was 350 to 1,650 m/z with a resolution of 120,000 and a resolution of 30,000 for MS2 with a stepped normalized collision energy (NCE) of 25 DIA data analysis. An in silico spectral library was generated for the reference proteome of Mus musculus (EMBL-EBI RELEASE 2020_04; 22,295 entries) with a deep neural network from DIA-NN v1.7.10 (55). For search space reduction, a list of previously MS-detectible mouse peptides was compiled from multiple sources-Peptide Atlas (56) and the mouse spectral libraries from references 57 and 58, 265,780 entries. The generated library with 667,455 precursors was used for DIA data extraction with DIA-NN version 1.7.10 with a protein q-value of 0.01 and RT-profiling enabled.
Statistical analysis. For proteomics analysis, the statistical functions module from the Python package SciPy was used to identify proteins that were differentially abundant between sets of samples (using Student's t test). Functional enrichment analysis of differentially abundant proteins was performed through the Database for Annotation, Visualization, and Integrated Discovery (DAVID). DAVID was run using default settings with the thresholds count $ 2 and EASE # 0.1. Visualization of enriched Genome Ontology (GO) terms was produced using code adapted for treemap visualizations from the Web tool REVIGO. All other statistical analyses were performed in GraphPad Prism version 8, with a P value of , 0.05 considered statistically significant. Unless otherwise indicated, normally distributed pairwise comparisons were performed using a two-tailed Student's t test, and nonnormal distributions were compared using the Mann-Whitney U test.
Supplemental material. Fig. S1 details BUN levels across multiple time points in sepsis in Ndst1 f/ f Tie2Cre mice and liver damage and infection parameters in Ndst1 f/f LysM;PF4Cre mice. Fig. S2 highlights flow cytometry parameters and additional cell population counts from infected livers, as well as complete blood count analysis.

SUPPLEMENTAL MATERIAL
Supplemental material is available online only. VIDEO S1, AVI file, 0.9 MB.