Abstract

The frog family Bufonidae is a large group distributed throughout all major land masses of the world except the polar regions. Although the monophyly of Bufonidae is strongly supported, phylogenetic relationships within the group are not well understood. Because of apparently large differences in rates of morphological and behavioral evolution, speciation, and geographical range, Bufonidae raises intriguing macroevolutionary questions. For example, one might imagine that the group's evolutionary history is congruent (1) with its morphological and behavioral character distribution, or (2) with its current geographical positioning. To examine phylogenetic relationships within Bufonidae and test these alternate hypotheses, DNA sequence data were obtained from four genes, three mitochondrial and one nuclear, from populations throughout the geographic and taxonomic breadth of the family. Phylogenetic analyses of these sequences by several methods support several hypotheses of relationships, notably: (1) contrary to the previous hypotheses of some workers, Bufo is not the basal, wildly paraphyletic genus of Bufonidae, although it is also not monophyletic, (2) the basal splits within bufonids separate South American ‘atelopodid’ genera from all other bufonids, although the monophyly of the ‘atelopodids’ is not supported, and (3) the most highly supported clades within the family generally correspond to small- to medium-sized, geographically and morphologically homogeneous groups. These trees are used to test the two alternate macroevolutionary hypotheses, and, while neither hypothesis fully explains the observed phylogenetic relationships, these relationships are broadly consistent with both character distribution and geography at particular levels.

REFERENCES

Anderson
S
,
Bankier
AT
,
Barrell
BG
,
De Bruign
MHL
,
Coulson
AR
,
Drouin
J
,
Eperon
IC
,
Nierlich
DP
,
Staden
R
,
Young
IG
1981
.
Sequence and organization of the human mitochondrial genome
.
Nature
290
:
457
465
.

Anderson
S
,
De Bruijn
MHL
,
Coulson
AR
,
Eperon
IC
,
Sanger
F
,
Young
IG
1982
.
Complete sequence of bovine mitochondrial DNA: conserved features of the mammalian mitochondrial genome
.
Journal of Molecular Biology
156
:
683
717
.

Arnason
U
,
Gullberg
A
,
Widegren
B
1991
.
The complete nucleotide sequence of the mitochondrial DNA of the fin whale,
Balaenoptera physalus. Journal of Molecular Evolution
33
:
556
568
.

Arnason
U
,
Johnsson
E
1992
.
The complete mitchondrial DNA sequence of the harbor seal,
Phoca vilulina. Journal of Molecular Evolution
34
:
493
505
.

Avise
JC
,
Arnold
J
,
Ball
RM
,
Bermingham
E
,
Lamb
T
,
Neigel
JE
,
Reeb
CA
,
Saunders
NC
1987
.
Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics
.
Annual Review of Ecology and Systematics
18
:
489
522
.

Baldauf
RJ
1959
.
Morphological criteria and their use in showing bufonid phylogeny
.
Journal of Morphology
104
:
527
560
.

Barrett
M
,
Donoghue
MJ
,
Sober
E
1991
.
Against consensus
.
Systematic Zoology
40
:
486
493
.

Baum
DA
,
Larson
A
1991
.
Adaptation reviewed: a phylogenetic methodology for studying character evolution
.
Systematic Zoology
40
:
1
18
.

Benton
MJ
1990
.
Phylogeny of the major tetrapod groups: morphological data and divergence dates
.
Journal of Molecular Evolution
30
:
409
424
.

Bibb
MJ
,
van Etten
RA
,
Wright
CT
,
Walberg
MW
,
Clayton
DA
1981
.
Sequence and gene organization of mouse mitochondrial DNA
.
Cell
26
:
167
180
.

Bilofsky
HS
,
Burks
C
1988
.
The GenBank (R) Genetic Sequence Data Bank
.
Nucleic Acids Research
16
:
1861
1864
.

Blair
WF
1963
.
Evolutionary relationships of North American toads of the genus Bufo: a progress report
.
Evolution
17
:
1
16
.

Blair
WF
1966
.
Genetic compatibility in the Bufo vallkeps and closely related groups of toads
.
Texas Journal of Science
18
:
333
351
.

Blair
WF
1972a
.
Evidence from hybridization
. In:
Blair
WF
ed.
Evolution in the genus Bufo.
Austin, TX
:
University of Texas Press
,
196
243
.

Blair
WF
1972b
.
Summary
. In:
Blair
WF
ed.
Evolution in the genus Bufo.
Austin, TX
:
University of Texas Press
,
329
343
.

Blair
WF
ed.
1972c
.
Evolution in the genus Bufo.
,
Austin, TX
:
University of Texas Press
.

Bogart
JP
1972
.
Karyotypes
. In:
Blair
WF
ed.
Evolution in the genus Bufo.
Austin,TX
:
University of Texas Press
,
171
195
.

Brown
WM
,
Prager
EM
,
Wang
A
,
Wilson
AC
1982
.
Mitochondrial DNA sequences of primates: tempo and mode of evolution
.
Journal of Molecular Evolution
18
:
225
239
.

Brun
G
,
Dunon-Bluteau
D
1986
.
The secondary structures of the Xenopus laevis and human mitochondrial ribosomal subunit RNAs are similar
.
FEBS Letters
198
:
333
335
.

Bull
JJ
,
Huelsenbeck
JP
,
Cunningham
CW
,
Swofford
DL
,
Waddell
PJ
1993
.
Partitioning and combining data in phylogenetic analysis
.
Systematic Biology
42
:
384
397
.

Cannatella
DC
1986
.
A new genus of bufonid (Anura) from South America, and phylogenetic relationships of the neotropical genera
.
Herpetologka
42
:
197
205
.

Carroll
RL
1988
.
Vertebrate paleontology and evolution.
,
New York
:
W. H. Freeman and Co
.

Cei
JM
,
Erspamer
V
,
Roseghini
M
1972
.
Biogenic amines
. In:
Blair
WF
ed.
Evolution in the genus Bufo.
Austin, TX
:
University of Texas Press
,
233
243
.

Chang
Y-S
,
Huang
F-L
,
Lo
T-B
1994
.
The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome
.
Journal of Molecular Evolution
38
:
138
155
.

Charming
A
1978
.
A new bufonid genus (Amphibia: Anura) from Rhodesia
.
Herpetologka
34
:
394
397
.

Cope
ED
1875
.
On die Batrachia and Reptilia of Costa Rica, with notes on die herpetology and ichthyology of Nicaragua and Peru
.
Journal of the Academy of Natural Sciences
, Philadelphia series 2,
8
:
93
154
.

Crump
ML
1989
.
Life history consequences of feeding versus non-feeding in a facultatively non-feeding toad larva
.
Oecobgia
78
:
486
489
.

Cummings
MP
,
Otto
SP
,
Wakeley
J
1995
.
Sampling properties of DNA sequence data in phylogenetic analysis
.
Molecular Biology and Evolution
12
:
814
822
.

de Queiroz
A
1993
.
For consensus (sometimes)
.
Systematic Biology
42
:
368
372
.

de Queiroz
K
,
Gauthier
J
1990
.
Phytogeny as a central principle in taxonomy: phylogenetic definitions of taxon names
.
Systematic Zoology
39
:
307
322
.

de Queiroz
K
,
Gauthier
J
1992
.
Phylogenetic taxonomy
.
Annual Review of Ecology and Systemalics
23
:
449
480
.

de Queiroz
K
,
Gauthier
J
1994
.
Toward a phylogenetic system of nomenclature
.
Trends in Ecology and Evolution
9
:
27
31
.

de Rijk
P
,
Van
de Peer Y
,
Chapelle
S
,
de Wachter
R
1994
.
Database on the structure of large ribosomal subunit RNA
.
Nucleic Acids Research
22
:
3495
3501
.

Desjardins
P
,
Morais
R
1990
.
Sequence and gene organization of the chicken mitochondrial genome: a novel gene order in higher vertebrates
.
Journal of Molecular Biology
212
:
599
634
.

Dixon
MT
,
Hillis
DM
1993
.
Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis
.
Molecular Biology and Evolution
10
:
256
267
.

Donoghue
MJ
1989
.
Phylogenies and the analysis of evolutionary sequences, with examples from seed plants
.
Evolution
43
:
1137
1156
.

Donoghue
MJ
,
Olmstead
RG
,
Smith
JF
,
Palmer
JD
1992
.
Phylogenetic relationships of Dipsacales based on rbcL sequences
.
Annals of the Missouri Botanical Garden
79
:
333
345
.

Edwards
AWF
1995
.
Assessing molecular phylogenies
.
Science
267
:
253
.

Estes
R
,
Reig
OA
1973
.
The early fossil record of frogs: a review of the evidence
. In:
Vial
JL
ed.
Evolutionary biology of the anurans: contemporary research on major problems.
Columbia, MO
:
University of Missouri Press
,
11
63
.

Farris
JS
1970
.
Methods for computing Wagner trees
.
Systematic Zoology
19
:
83
92
.

Feder
JH
1979
.
Natural hybridization and genetic divergence between the toads Bufo boreas and
Bufo punctatus. Evolution
33
:
1089
1097
.

Felsenstein
J
1973
.
Maximum likelihood and minimum-steps metfiods for estimating evolutionary trees from data on discrete characters
.
Systematic Zoology
22
:
240
249
.

Felsenstein
J
1981
.
Evolutionary trees from DNA sequences: a maximum likelihood approach
.
Journal of Molecular Evolution
17
:
368
376
.

Felsenstein
J
1985a
.
Phylogenies and die comparative method
.
American Naturalist
125
:
1
15
.

Felsenstein
J
1985b
.
Confidence limits on phylogenies with a molecular clock
.
Systematic Zoology
34
:
152
161
.

Felsenstein
J
1993
.
PHYLIP: Phylogenetic inference package, version 3.5c
.
Seattle
:
University of Washington
.

Ferguson
JH
,
Lowe
CH
1969
.
Evolutionary relationships in the Bufo punctatus group
.
American Midland Naturalist
81
:
435
466
.

Ford
LS
,
Cannatella
DC
1993
.
The major clades of frogs
.
Herpetobgkal Monographs
7
:
94
117
.

Frost
D
ed.
1985
.
Amphibian species of the world.
,
Lawrence, KS
:
Allen Press
.

Gadaleta
G
,
Pepe
G
,
de Candia
G
,
Quagliariello
C
,
Sbisa
E
,
Saccone
C
1989
.
The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates
.
Journal of Molecular Evolution
28
:
497
516
.

Grandison
AGC
1981
.
Morphology and phylogenetic position of the West African Didynamipus sjoestedti Andersson, 1903 (Anura Bufonidae)
.
Monitore Zoologico Italiano N.S. Supplemento
,
15
:
187
215
.

Graybeal
A
1993
.
The phylogenetic utility of cytochrome b: lessons from bufonid frogs
.
Molecular Phylogenetics and Evolution
2
:
256
269
.

Graybeal
A
1994
.
Evaluating the phylogenetic utility of genes: a search for genes informative about deep divergences among vertebrates
.
Systematic Biology
43
:
174
193
.

Graybeal
A
1995
.
Phylogenetic relationships and evolution of bufonid frogs based on molecular and morphological characters
. PhD dissertation,
University of California at Berkeley
.

Graybeal
A
,
Cannatella
DC
1995
.
A new taxon of Bufonidae from Peru, with descriptions of two new species and a review of the phylogenetic status of bufonid genera
.
Herpetologica
51
:
105
131
.

Green
DM
1984
.
Sympatric hybridization and allozyme variation in the toads Bufo americanus and B. fowleri in Southern Ontario
.
Copeia
1984
:
18
26
>.

Griffiths
I
1963
.
The phylogeny of the Salientia
.
Biological Reviews
38
:
241
292
.

Gutell
RR
1994
.
Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994
.
Nucleic Acids Research
22
:
3502
3507
.

Gyllensten
V
,
Erlich
H
1988
.
Generation of single-stranded DNA by the polymerase chain reaction and its applications to direct sequencing of the HLA DQa locus
.
Proceedings of the National Academy of Sciences USA
85
:
7652
7656
.

Harvey
PH
,
Pagel
MD
1991
. 77K
Comparative method in evolutionary biology.
,
Oxford
:
Oxford University Press
.

Hillis
DM
,
Dixon
MT
1991
.
Ribosomal DNA: molecular evolution and phylogenetic inference
.
Quarterly Review of Biology
66
:
411
445
.

Huelsenbeck
JP
1991
.
When are fossils better than extant taxa in phylogenetic analysis?
Systematic Zoology
40
:
458
469
.

Inger
RF
1967
.
The development of a phylogeny of frogs
.
Evolution
21
:
369
384
.

Inger
RF
1972
.
Bufo of Eurasia
. In:
Blair
WF
ed.
Evolution in the genus Bufo
.
Austin, TX
:
University of Texas Press
,
102
118
.

Janke
A
,
Feldmaier-Fuchs
G
,
Thomas
WK
,
von Haeseler
A
,
Paabo
S
1994
.
The marsupial mitochondrial genome and the evolution of placental mammals
.
Genetics
137
:
243
256
.

Karlstrom
EL
1962
.
The toad genus Bufo in the Sierra Nevada of California: ecological and systematic relationships
.
University of California Publications in Zoology
62
:
1
104
.

Kishino
H
,
Hasegawa
M
1989
.
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
.
Journal of Molecular Evolution
29
:
170
179
.

Kjer
KM
1995
.
Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs
.
Molecular Phylogenetics and Evolution
4
:
314
330
.

Kluge
AG
1989
.
A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
.
Systematic Zoology
38
:
7
25
.

Kluge
AG
,
Farris
JS
1969
.
Quantitative phyletics and the evolution of anurans
.
Systematic Zoology
18
:
1
32
.

Knight
A
,
Mindell
DP
1993
.
Substitution bias, weighting of DNA sequence evolution, and the phylogenetic position of Fea's viper
.
Systematic Biology
42
:
18
31
.

Kumar
S
,
Tamura
K
,
Nei
M
1993
.
MEGA: molecular evolutionary genetic analysis
, version 1.0.
University Park
:
Pennsylvania State University
.

Lessa
EP
,
Smith
MF
,
Orrego
C
1992
.
A cool hot start for PCR amplifications
.
Ancient DNA Newsletter
1
:
40
42
.

Li
W-H
,
Graur
D
1991
.
Fundamentals of molecular evolution.
,
Sunderland, MA
:
Sinauer Associates, Inc
.

Liu
CC
1950
.
Amphibians of western China
.
Fieldiana Zoology
2
:
1
400
.

LososJB
Miles DB
1994
.
Adaptation, constraint, and the comparative method: phylogenetic issues and methods
. In:
Wainwright
PC
,
Reilly
SM
eds.
Ecological morphology: integrative organismal biology.
Chicago, IL
:
University of Chicago Press
,
60
98
.

Lynch
JD
1973
.
The transition from archaic to advanced frogs
. In:
Vial
JL
Evolutionary biology of the anurans: contemporary research on major problems.
Columbia, MO
:
University of Missouri Press
,
133
182
.

Maddison
WP
1989
.
Reconstructing character evolution on polytomous cladograms
.
Cladistics
5
:
365
378
.

Maddison
WP
1990
.
A method for testing the correlated evolution of two binary characters: are gains or losses concentrated on certain branches of a phylogenetic tree?
Evolution
44
:
539
557
.

Maddison
WP
,
Maddison
DR
1992
.
MacClade: analysis of phylogeny and character evolution.
,
Sunderland, MA
:
Sinauer Associates
.

Maidak
BL
,
Larsen
N
,
McCaughey
MJ
,
Overbeek
R
,
Olsen
GJ
,
Fogel
K
,
Blandy
J
,
Woese
CR
1994
.
The ribosomal database project
.
Nucleic Acids Research
22
:
3485
3487
.

Maniatis
T
,
Frisch
EF
,
Sambrook
J
1982
.
Molecular cloning: a laboratory manual.
,
Cold Spring Harbor, NY
:
Cold Spring Harbor Laboratory Publications
.

Martin
RF
1972
.
Evidence from osteology
. In:
Blair
WF
Evolution in the genus Bufo.
Austin, TX
:
University of Texas Press
,
37
70
.

Maxson
LR
1981a
.
Albumin evolution and its phylogenetic implications in African toads of the genus Bufo
.
Herpetologica
37
:
96
104
.

Maxson
LR
1981b
.
Albumin evolution and its phylogenetic implications in toads of the genus Bufo. II. Relationships among Eurasian Bufo
.
Copeia
1981
:
579
583
.

Maxson
LR
1984
.
Molecular probes of phylogeny and biogeography in toads of the widespread genus
Bufo. Molecular Biology and Evolution
1
:
345
356
.

Maxson
LR
,
Song
A-R
,
Lopata
R
1981
.
Phylogenetic relationships among North American toads, genus
Bufo. Biochemical Systematics and Evolution
9
:
347
350
.

McDiarmid
RW
1971
.
Comparative morphology and evolution of frogs of the Neotropical genera Atelopus, Dendrophryniscus, Melanophryniscus, and Oreophrynella
.
Science Bulletin of the Los Angeles County Museum of Natural History
12
:
1
66
.

Medrano
JF
,
Aasen
E
,
Sharrow
L
1990
.
DNA extraction from nucleated red blood cells
.
Biotechniques
8
:
43
.

Mickevich
MF
,
Farris
JS
1981
.
The implications of congruence in Menidia
.
Systematic Zoology
30
:
351
370
.

Mindell
DP
,
Honeycutt
RL
1990
.
Ribosomal RNA in vertebrates: evolution and phylogenetic applications
.
Annual Review of Ecology and Systematics
21
:
541
566
.

Miyamoto
MM
,
Allard
MW
,
Adkins
RM
,
Janecek
LL
,
Honeycutt
RL
1994
.
A congruence test of reliability using linked mitochondrial DNA sequences
.
Systematic Biology
43
:
236
249
.

Miyamoto
MM
,
Fitch
WM
1995
.
Testing species phylogenies and phylogenetic methods with congruence
.
Systematic Biology
44
:
64
76
.

Moritz
C
,
Dowling
TE
,
Brown
WM
1987
.
Evolution of animal mitochondrial DNA: relevance for population biology and systematics
.
Annual Review of Ecology and Systematics
18
:
269
292
.

Mullis
KB
1991
.
The polymerase chain reaction in an anemic mode: how to avoid cold oligodeoxyribonuclear fusion
.
PCR Methods and Applications
1
:
1
4
.

Myers
GS
1942
.
The black toad of Deep Springs Valley, Inyo County, California
.
Occasional Papers of the Museum of Zoology
,
University of Michigan Press
460
:
1
13
.

Nei
M
1987
.
Molecular evolutionary genetics.
,
New York
:
Columbia University Press
.

Nevo
E
1968
.
Pipid frogs from the early Cretaceous of Israel and pipid evolution
.
Bulletin of the Museum of Comparative Zoology
,
Harvard University
136
:
225
318
.

Novak
RM
,
Robinson
DC
1975
.
Observations on the reproduction and ecology of the tropical montane toad, Bufo holdridgei Taylor in Costa Rica
.
Revista de Biologia Tropical
23
:
213
237
.

O'Hara
RJ
1988
.
Homage to Clio, or, toward an historical philosophy for evolutionary biology
.
Systematic Zoology
37
:
142
155
.

Olsen
GJ
,
Matsuda
H
,
Hagstrom
R
,
Overbeek
R
1994
.
FASTDNAML–A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
.
CABIOS
10
:
41
48
.

Pamilo
P
,
Nei
M
1988
.
Relationships between gene trees and species trees
.
Molecular Biology and Evolution
5
:
568
583
.

Reeder
TW
1995
.
Phylogenetic relationships among phrynosomatid lizards as inferred from mitochondrial ribosomal DNA sequences: substitutional bias and information content of transitions relative to transversions
.
Molecular Phylogenetks and Evolution
4
:
203
222
.

Roe
BA
,
Ma
D-P
,
Wilson
RK
,
Wong
JF-H
1985
.
The complete nucleotide sequence of the Xenopus laevis mitochondrial genome
.
Journal of Biological Chemistry
260
:
9759
9774
.

Sagata
N
,
Oskarsson
M
,
Copeland
T
,
Brumbaugh
J
,
Vande Woude
GF
1988
.
Function of c-mos proto-oncogene product in meiotic maturation in Xenopus oocytes
.
Nature
335
:
519
525
.

Saitou
N
,
Nei
M
1987
.
The neighbor-joining method: a new method for reconstructing phylogenetic trees
.
Molecular Biology and Evolution
4
:
406
425
.

Sanderson
MJ
,
Donoghue
MJ
1989
.
Patterns of variation in levels of homoplasy
.
Evolution
43
:
1781
1795
.

Sanger
F
,
Nicklen
S
,
Coulson
AR
1977
.
DNA sequencing with chain-terminating inhibitors
.
Proceedings of the National Academy of Sciences USA
74
:
5463
5467
.

Savage
JM
1972
.
The systematic status of Bufo simus O. Schmidt with description of a new toad from western Panama
.
Journal of Herpetology
6
:
25
33
.

Schwarz
K
,
Hansen-Hagge
T
,
Bartram
C
1990
.
Improved yields of long PCR products using gene 32 protein
.
Nucleic Acids Research
18
:
1079
.

Swofford
DL
1991a
.
Phylogenetic Analysis Using Parsimony (PAUP).
Champaign, Illinois
,
computer program distributed by the Illinois Natural History Survey
.

Swofford
DL
1991b
.
When are phylogeny estimates from molecular and morphological data incongruent?
In:
Miyamoto
MM
,
Cracraft
J
Phylogenetic analysis of DNA sequences.
New York
:
Oxford University Press
,
295
333
.

Tandy
M
,
Keith
R
1972
.
Bufo of Africa
. In:
Blair
WF
ed.
Evolution in the genus Bufo.
Austin, TX
:
University of Texas Press
,
119
170
.

Taylor
EH
1952
.
The frogs and toads of Costa Rica
.
University of Kansas Science Bulletin
35
:
577
942
.

Templeton
AR
1983
.
Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
.
Evolution
37
:
221
244
.

Thornton
WA
1955
.
Interspecific hybridization in Bufo woodhousei and
Bufo valliceps. Evolution
9
:
455
468
.

Tihen
JA
1960
.
Two new genera of African bufonids, with remarks on the phylogeny of related genera
.
Copeia
1960
:
225
233
.

Tihen
JA
1962
.
A review of New World fossil bufonids
.
American Midland Naturalist
68
:
1
50
.

Titus
TA
,
Larson
A
1995
.
A molecular phylogenetic perspective on the evolutionary radiation of the salamander family Salamandridae
.
Systematic Biology
44
:
125
151
.

Tzeng
C-S
,
Hui
C-F
,
Shen
S-C
,
Huang
PC
1992
.
The complete nucleotide sequence of the Cmssostome lacustre mitochondrial genome: conservation and variations among vertebrates
.
Nucleic Acids Research
20
:
4853
4858
.

Wallis
GP
,
Arntzen
JW
1989
.
Mitochondrial-DNA variation in the crested newt superspecies: limited cytoplasmic gene flow among species
.
Evolution
43
:
88
104
.

Walsh
PS
,
Metzger
DA
,
Higuchi
R
1991
.
Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
.
Biotechmques
10
:
506
513
.

Wheeler
WC
,
Honeycutt
RL
1988
.
Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications
.
Molecular Biology and Evolution
5
:
90
96
.

Wiens
JJ
,
Reeder
TW
1995
.
Combining data sets with different numbers of taxa for phylogenetic analysis
.
Systematic Biology
558
.

Yoneyama
Y
1987
.
The nucleotide sequences of the heavy and light strand replication origins of the Rana catesbiana mitochondrial genome
.
Nippon Ika Daigaku Zasshi
54
:
429
440
.

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