Gene regulatory and signaling networks exhibit distinct topological distributions of motifs

Gustavo Rodrigues Ferreira, Helder Imoto Nakaya, and Luciano da Fontoura Costa
Phys. Rev. E 97, 042417 – Published 27 April 2018

Abstract

The biological processes of cellular decision making and differentiation involve a plethora of signaling pathways and gene regulatory circuits. These networks in turn exhibit a multitude of motifs playing crucial parts in regulating network activity. Here we compare the topological placement of motifs in gene regulatory and signaling networks and observe that it suggests different evolutionary strategies in motif distribution for distinct cellular subnetworks.

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  • Received 24 October 2017
  • Revised 18 December 2017

DOI:https://doi.org/10.1103/PhysRevE.97.042417

©2018 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living SystemsNetworks

Authors & Affiliations

Gustavo Rodrigues Ferreira1, Helder Imoto Nakaya2, and Luciano da Fontoura Costa1,*

  • 1São Carlos Institute of Physics, University of São Paulo, São Carlos, Brazil
  • 2School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil

  • *ldfcosta@gmail.com

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Issue

Vol. 97, Iss. 4 — April 2018

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