Shear viscosity of two-state enzyme solutions

Yuto Hosaka, Shigeyuki Komura, and David Andelman
Phys. Rev. E 101, 012610 – Published 28 January 2020

Abstract

We discuss the shear viscosity of a Newtonian solution of catalytic enzymes and substrate molecules. The enzyme is modeled as a two-state dimer consisting of two spherical domains connected with an elastic spring. The enzymatic conformational dynamics is induced by the substrate binding and such a process is represented by an additional elastic spring. Employing the Boltzmann distribution weighted by the waiting times of enzymatic species in each catalytic cycle, we obtain the shear viscosity of dilute enzyme solutions as a function of substrate concentration and its physical properties. The substrate affinity distinguishes between fast and slow enzymes, and the corresponding viscosity expressions are obtained. Furthermore, we connect the obtained viscosity with the diffusion coefficient of a tracer particle in enzyme solutions.

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  • Received 16 September 2019

DOI:https://doi.org/10.1103/PhysRevE.101.012610

©2020 American Physical Society

Physics Subject Headings (PhySH)

  1. Research Areas
  1. Physical Systems
  1. Properties
Polymers & Soft MatterPhysics of Living Systems

Authors & Affiliations

Yuto Hosaka and Shigeyuki Komura*

  • Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Tokyo 192-0397, Japan

David Andelman

  • Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Ramat Aviv, Tel Aviv 69978, Israel

  • *komura@tmu.ac.jp
  • andelman@tauex.tau.ac.il

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Vol. 101, Iss. 1 — January 2020

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