Force-Dependent Fragility in RNA Hairpins

M. Manosas, D. Collin, and F. Ritort
Phys. Rev. Lett. 96, 218301 – Published 31 May 2006

Abstract

We apply Kramers theory to investigate the dissociation of multiple bonds under mechanical force and interpret experimental results for the unfolding and refolding force distributions of an RNA hairpin pulled at different loading rates using laser tweezers. We identify two different kinetic regimes depending on the range of forces explored during the unfolding and refolding process. The present approach extends the range of validity of the two-states approximation by providing a theoretical framework to reconstruct free-energy landscapes and identify force-induced structural changes in molecular transition states using single molecule pulling experiments. The method should be applicable to RNA hairpins with multiple kinetic barriers.

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  • Received 23 September 2005

DOI:https://doi.org/10.1103/PhysRevLett.96.218301

©2006 American Physical Society

Authors & Affiliations

M. Manosas1, D. Collin2, and F. Ritort1

  • 1Departament de Física Fonamental, Facultat de Física, Universitat de Barcelona Diagonal 647, 08028 Barcelona, Spain
  • 2Merck & Co., Inc., Automated Biotechnology Department, North Wales, Pennsylvania 19454, USA

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Issue

Vol. 96, Iss. 21 — 2 June 2006

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