Quantifying local structure effects in network dynamics

Andre S. Ribeiro, Jason Lloyd-Price, Juha Kesseli, Antti Häkkinen, and Olli Yli-Harja
Phys. Rev. E 78, 056108 – Published 24 November 2008

Abstract

Mutual information between the time series of two dynamical elements measures how well their activities are coordinated. In a network of interacting elements, the average mutual information over all pairs of elements I is a global measure of the correlation between the elements’ dynamics. Local topological features in the network have been shown to affect I. Here we define a generalized clustering coefficient Cp and show that this quantity captures the effects of local structures on the global dynamics of networks. Using random Boolean networks (RBNs) as models of networks of interacting elements, we show that the variation of I (I averaged over an ensemble of RBNs with the number of nodes N and average connectivity k) with N and k is caused by the variation of Cp. Also, the variability of I between RBNs with equal N and k is due to their distinct values of Cp. Consequently, we propose a rewiring method to generate ensembles of BNs, from ordinary RBNs, with fixed values of Cp up to order 5, while maintaining in- and out-degree distributions. Using this methodology, the dependency of Cp on N and k and the variability of I for RBNs with equal N and k are shown to disappear in RBNs with Cp set to zero. The I of ensembles of RBNs with fixed, nonzero Cp values, also becomes almost independent of N and k. In addition, it is shown that Cp exhibits a power-law dependence on N in ordinary RBNs, suggesting that the Cp affects even relatively large networks. The method of generating networks with fixed Cp values is useful to generate networks with small N whose dynamics have the same properties as those of large scale networks, or to generate ensembles of networks with the same Cp as some specific network, and thus comparable dynamics. These results show how a system’s dynamics is constrained by its local structure, suggesting that the local topology of biological networks might be shaped by selection, for example, towards optimizing the coordination between its components.

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  • Received 14 March 2008

DOI:https://doi.org/10.1103/PhysRevE.78.056108

©2008 American Physical Society

Authors & Affiliations

Andre S. Ribeiro*, Jason Lloyd-Price, Juha Kesseli, Antti Häkkinen, and Olli Yli-Harja

  • Computational Systems Biology Research Group, Tampere University of Technology, Finland

  • *andre.sanchesribeiro@tut.fi

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Issue

Vol. 78, Iss. 5 — November 2008

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