Heteropolymer sequence design and preferential solvation of hydrophilic monomers: Application of random energy model

Longhua Hu and Alexander Y. Grosberg
Phys. Rev. E 75, 041921 – Published 30 April 2007

Abstract

We study the role of the surface of the globule and the role of interactions with the solvent for designed-sequence heteropolymers using the random energy model. We investigate the ground-state energy and surface-monomer composition distribution. By comparing the freezing transition in random and designed-sequence heteropolymers, we discuss the effects of design. Based on our results, we are able to show under which conditions the solvation effect improves the quality of the sequence design. Finally, we study sequence-space entropy and discuss the number of available sequences as a function of the imposed requirements for design quality.

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  • Received 23 January 2007

DOI:https://doi.org/10.1103/PhysRevE.75.041921

©2007 American Physical Society

Authors & Affiliations

Longhua Hu and Alexander Y. Grosberg

  • Department of Physics, University of Minnesota, 116 Church Street SE, Minneapolis, Minnesota 55455, USA

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Issue

Vol. 75, Iss. 4 — April 2007

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