Mathematical modeling of microscale biology: Ion pairing, spatially varying permittivity, and Born energy in glycosaminoglycan brushes

William J. Ceely, Marina Chugunova, Ali Nadim, and James D. Sterling
Phys. Rev. E 107, 024416 – Published 23 February 2023

Abstract

Biological macromolecules including nucleic acids, proteins, and glycosaminoglycans are typically anionic and can span domains of up to hundreds of nanometers and even micron length scales. The structures exist in crowded environments that are dominated by multivalent electrostatic interactions that can be modeled using mean-field continuum approaches that represent underlying molecular nanoscale biophysics. We develop such models for glycosaminoglycan brushes using steady state modified Poisson-Boltzmann models that incorporate important ion-specific (Hofmeister) effects. The results quantify how electroneutrality is attained through ion electrophoresis, spatially-varying permittivity hydration forces, and ion-specific pairing. Brush-salt interfacial profiles of the electrostatic potential as well as bound and unbound ions are characterized for imposed jump conditions across the interface. The models should be applicable to many intrinsically-disordered biophysical environments and are anticipated to provide insight into the design and development of therapeutics and drug-delivery vehicles to improve human health.

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  • Received 29 June 2022
  • Revised 3 October 2022
  • Accepted 12 January 2023

DOI:https://doi.org/10.1103/PhysRevE.107.024416

©2023 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living Systems

Authors & Affiliations

William J. Ceely*, Marina Chugunova, and Ali Nadim

  • Institute of Mathematical Sciences, Claremont Graduate University, Claremont, California 91711, USA

James D. Sterling§

  • Henry E. Riggs School of Applied Life Sciences, Keck Graduate Institute, Claremont, California 91711, USA

  • *william.ceely@cgu.edu
  • marina.chugunova@cgu.edu
  • ali.nadim@cgu.edu
  • §jim_sterling@kgi.edu

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Issue

Vol. 107, Iss. 2 — February 2023

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