Stability of Designed Proteins against Mutations

R. A. Broglia, G. Tiana, H. E. Roman, E. Vigezzi, and E. Shakhnovich
Phys. Rev. Lett. 82, 4727 – Published 7 June 1999
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Abstract

The stability of model proteins with designed sequences is assessed in terms of the number of sequences, obtained from the designed sequence through mutations, which fold into the “native” conformation. By a complete enumeration of the sequences obtained by introducing up to four point mutations and up to seven composition-conserving mutations (swapping of amino acids) in a 36mers chain and by running dynamic simulations on the mutated sequences, it is found that this number depends on the gap between the native conformation and the bulk of misfolded conformations, but not on the particular designed sequence, provided its associated energy gap is large.

  • Received 28 September 1998

DOI:https://doi.org/10.1103/PhysRevLett.82.4727

©1999 American Physical Society

Authors & Affiliations

R. A. Broglia1,2,3, G. Tiana1,3, H. E. Roman1,2, E. Vigezzi1,2, and E. Shakhnovich4

  • 1Dipartimento di Fisica, Università di Milano, Via Celoria 16, I-20133 Milano, Italy
  • 2INFN, Sezione di Milano, Via Celoria 16, I-20133 Milano, Italy
  • 3The Niels Bohr Institute, University of Copenhagen, 2100 Copenhagen, Denmark
  • 4Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138

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Vol. 82, Iss. 23 — 7 June 1999

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