Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics

Daniele De Martino
Phys. Rev. E 95, 062419 – Published 28 June 2017

Abstract

In this work it is shown that scale-free tails in metabolic flux distributions inferred in stationary models are an artifact due to reactions involved in thermodynamically unfeasible cycles, unbounded by physical constraints and in principle able to perform work without expenditure of free energy. After implementing thermodynamic constraints by removing such loops, metabolic flux distributions scale meaningfully with the physical limiting factors, acquiring in turn a richer multimodal structure potentially leading to symmetry breaking while optimizing for objective functions.

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  • Received 7 March 2017

DOI:https://doi.org/10.1103/PhysRevE.95.062419

©2017 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living SystemsNetworksGeneral Physics

Authors & Affiliations

Daniele De Martino

  • Institute of Science and Technology Austria, Am Campus 1, A-3400 Klosterneuburg, Austria

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Vol. 95, Iss. 6 — June 2017

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