Fractional Brownian motion approach to polymer translocation: The governing equation of motion

J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis
Phys. Rev. E 83, 011802 – Published 12 January 2011

Abstract

We suggest a governing equation that describes the process of polymer-chain translocation through a narrow pore and reconciles the seemingly contradictory features of such dynamics: (i) a Gaussian probability distribution of the translocated number of polymer segments at time t after the process has begun, and (ii) a subdiffusive increase of the distribution variance Δ(t) with elapsed time Δ(t)tα. The latter quantity measures the mean-squared number s of polymer segments that have passed through the pore Δ(t)=[s(t)s(t=0)]2, and is known to grow with an anomalous diffusion exponent α<1. Our main assumption [i.e., a Gaussian distribution of the translocation velocity v(t)] and some important theoretical results, derived recently, are shown to be supported by extensive Brownian dynamics simulation, which we performed in 3D. We also numerically confirm the predictions made recently that the exponent α changes from 0.91 to 0.55 to 0.91 for short-, intermediate-, and long-time regimes, respectively.

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  • Received 22 July 2010

DOI:https://doi.org/10.1103/PhysRevE.83.011802

© 2011 American Physical Society

Authors & Affiliations

J. L. A. Dubbeldam2, V. G. Rostiashvili1, A. Milchev1,3, and T. A. Vilgis1

  • 1Max Planck Institute for Polymer Research, 10 Ackermannweg, D-55128 Mainz, Germany
  • 2Delft University of Technology, NL-2628CD Delft, The Netherlands
  • 3Institute for Physical Chemistry, Bulgarian Academy of Sciences, BG-1113 Sofia, Bulgaria

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Vol. 83, Iss. 1 — January 2011

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