Identification of cis-acting packaging signals in the coding regions of the influenza B virus HA gene segment

References

1. Barclay W. S., Palese P. 1995; Influenza B viruses with site-specific mutations introduced into the HA gene. J Virol 69:1275–1279[PubMed]
   [Google Scholar]
2. Chou Y. Y., Heaton N. S., Gao Q., Palese P., Singer R. H., Lionnet T. 2013; Colocalization of different influenza viral RNA segments in the cytoplasm before viral budding as shown by single-molecule sensitivity FISH analysis. PLoS Pathog 9:e1003358 [View Article][PubMed]
   [Google Scholar]
3. Donald H. B., Isaacs A. 1954; Counts of influenza virus particles. J Gen Microbiol 10:457–464 [View Article][PubMed]
   [Google Scholar]
4. Duhaut S. D., Dimmock N. J. 1998; Heterologous protection of mice from a lethal human H1N1 influenza A virus infection by H3N8 equine defective interfering virus: comparison of defective RNA sequences isolated from the DI inoculum and mouse lung. Virology 248:241–253 [View Article][PubMed]
   [Google Scholar]
5. Duhaut S., Dimmock N. J. 2000; Approximately 150 nucleotides from the 5′ end of an influenza A segment 1 defective virion RNA are needed for genome stability during passage of defective virus in infected cells. Virology 275:278–285 [View Article][PubMed]
   [Google Scholar]
6. Duhaut S. D., McCauley J. W. 1996; Defective RNAs inhibit the assembly of influenza virus genome segments in a segment-specific manner. Virology 216:326–337 [View Article][PubMed]
   [Google Scholar]
7. Essere B., Yver M., Gavazzi C., Terrier O., Isel C., Fournier E., Giroux F., Textoris J., Julien T., other authors. 2013; Critical role of segment-specific packaging signals in genetic reassortment of influenza A viruses. Proc Natl Acad Sci U S A 110:E3840–E3848 [View Article][PubMed]
   [Google Scholar]
8. Fournier E., Moules V., Essere B., Paillart J. C., Sirbat J. D., Isel C., Cavalier A., Rolland J. P., Thomas D., other authors. 2012; A supramolecular assembly formed by influenza A virus genomic RNA segments. Nucleic Acids Res 40:2197–2209 [View Article][PubMed]
   [Google Scholar]
9. Fujii Y., Goto H., Watanabe T., Yoshida T., Kawaoka Y. 2003; Selective incorporation of influenza virus RNA segments into virions. Proc Natl Acad Sci U S A 100:2002–2007 [View Article][PubMed]
   [Google Scholar]
10. Fujii K., Fujii Y., Noda T., Muramoto Y., Watanabe T., Takada A., Goto H., Horimoto T., Kawaoka Y. 2005; Importance of both the coding and the segment-specific noncoding regions of the influenza A virus NS segment for its efficient incorporation into virions. J Virol 79:3766–3774 [View Article][PubMed]
    [Google Scholar]
11. Gavazzi C., Yver M., Isel C., Smyth R. P., Rosa-Calatrava M., Lina B., Moulès V., Marquet R. 2013; A functional sequence-specific interaction between influenza A virus genomic RNA segments. Proc Natl Acad Sci U S A 110:16604–16609 [View Article][PubMed]
    [Google Scholar]
12. Gerber M., Isel C., Moules V., Marquet R. 2014; Selective packaging of the influenza A genome and consequences for genetic reassortment. Trends Microbiol 22:446–455 [View Article][PubMed]
    [Google Scholar]
13. Gog J. R., Afonso E. S., Dalton R. M., Leclercq I., Tiley L., Elton D., von Kirchbach J. C., Naffakh N., Escriou N., Digard P. 2007; Codon conservation in the influenza A virus genome defines RNA packaging signals. Nucleic Acids Res 35:1897–1907 [View Article][PubMed]
    [Google Scholar]
14. Goto H., Muramoto Y., Noda T., Kawaoka Y. 2013; The genome-packaging signal of the influenza A virus genome comprises a genome incorporation signal and a genome-bundling signal. J Virol 87:11316–11322 [View Article][PubMed]
    [Google Scholar]
15. Hoffmann E., Mahmood K., Yang C. F., Webster R. G., Greenberg H. B., Kemble G. 2002; Rescue of influenza B virus from eight plasmids. Proc Natl Acad Sci U S A 99:11411–11416 [View Article][PubMed]
    [Google Scholar]
16. Hutchinson E. C., von Kirchbach J. C., Gog J. R., Digard P. 2010; Genome packaging in influenza A virus. J Gen Virol 91:313–328 [View Article][PubMed]
    [Google Scholar]
17. Katz G., Benkarroum Y., Wei H., Rice W. J., Bucher D., Alimova A., Katz A., Klukowska J., Herman G. T., Gottlieb P. 2014; Morphology of influenza B/Lee/40 determined by cryo-electron microscopy. PLoS One 9:e88288 [View Article][PubMed]
    [Google Scholar]
18. Lakdawala S. S., Wu Y., Wawrzusin P., Kabat J., Broadbent A. J., Lamirande E. W., Fodor E., Altan-Bonnet N., Shroff H., Subbarao K. 2014; Influenza A virus assembly intermediates fuse in the cytoplasm. PLoS Pathog 10:e1003971 [View Article][PubMed]
    [Google Scholar]
19. Luytjes W., Krystal M., Enami M., Parvin J. D., Palese P. 1989; Amplification, expression, and packaging of foreign gene by influenza virus. Cell 59:1107–1113 [View Article][PubMed]
    [Google Scholar]
20. Marsh G. A., Hatami R., Palese P. 2007; Specific residues of the influenza A virus hemagglutinin viral RNA are important for efficient packaging into budding virions. J Virol 81:9727–9736 [View Article][PubMed]
    [Google Scholar]
21. Nayak D. P., Sivasubramanian N., Davis A. R., Cortini R., Sung J. 1982; Complete sequence analyses show that two defective interfering influenza viral RNAs contain a single internal deletion of a polymerase gene. Proc Natl Acad Sci U S A 79:2216–2220 [View Article][PubMed]
    [Google Scholar]
22. Noda T., Sagara H., Yen A., Takada A., Kida H., Cheng R. H., Kawaoka Y. 2006; Architecture of ribonucleoprotein complexes in influenza A virus particles. Nature 439:490–492 [View Article][PubMed]
    [Google Scholar]
23. Palese P., Shaw M. L. 2007; Orthomyxoviridae: the viruses and their replication. In Fields Virology, 5th edn. pp 1647–1689Edited by Knipe D. M., Howley P. M. Philadelphia: Lippincott Williams and Wilkins;
    [Google Scholar]
24. Sherry L., Smith M., Davidson S., Jackson D. 2014; The N terminus of the influenza B virus nucleoprotein is essential for virus viability, nuclear localization, and optimal transcription and replication of the viral genome. J Virol 88:12326–12338 [View Article][PubMed]
    [Google Scholar]
25. Watanabe T., Watanabe S., Noda T., Fujii Y., Kawaoka Y. 2003; Exploitation of nucleic acid packaging signals to generate a novel influenza virus-based vector stably expressing two foreign genes. J Virol 77:10575–10583 [View Article][PubMed]
    [Google Scholar]