1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 71, Issue 2

sp. nov., a bisphenol A-degrading bacterium isolated from seawater Free

Abstract

A bisphenol A-degrading bacterium, designated as strain H4, was isolated from surface seawater, which was sampled from the Jiulong River estuary in southeast PR China. Strain H4 is Gram-stain-negative, aerobic, short rod-shaped, lacking bacteriochlorophyll a, motile with multifibrillar stalklike fascicle structures and capable of degrading bisphenol A. Growth of strain H4 was observed at 24–45 °C (optimum, 32 °C), at pH 5.5–9 (optimum, pH 7.0) and in 0–7 % NaCl (optimum, 2 %; w/v) . The 16S rRNA gene sequence of strain H4 showed highest similarity to Ery9 (98.7 %), (98.3 %), PQ-2 (98.1 %) and GM-16 (97.6 %), followed by E4A9 (96.7 %) and Ery22 (96.0 %). Phylogenetic analysis revealed that strain H4 fell within a clade comprising the type strains of species and formed a phyletic line with them that was distinct from other members of the family . The sole respiratory quinone was quinone 10 (Q-10). The predominant fatty acids (>5 % of the total fatty acids) of strain H4 were summed feature 8 (C 6 and/or C 7), summed feature 3 (C 6 and/or C 7), C 6 and C2-OH. The genomic DNA G+C content was 62.8 mol%. In the polar lipid profile, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, two unidentified phospholipids, two sphingoglycolipids and three unknown lipids were the major compounds. Based on the genotypic and phenotypic data, strain H4 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is H4 (=DSM 102182=MCCC1 K02301).

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): bisphenol A-degrading , Croceicoccus , novel species and taxonomy
Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award 41673099)
    • Principle Award Recipient: Chang-PingYu
  • National Natural Science Foundation of China (Award 31500420)
    • Principle Award Recipient: JiangweiLi
© 2021 The Authors
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.004658
2021-01-25
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/71/2/ijsem004658.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.004658&mimeType=html&fmt=ahah

References

  1. Suyamud B, Thiravetyan P, Gadd GM, Panyapinyopol B, Inthorn D. Bisphenol A removal from a plastic industry wastewater by Dracaena sanderiana endophytic bacteria and Bacillus cereus NI. Int J Phytoremediation 2020; 22:167–175 [View Article][PubMed]
     [Google Scholar]
  2. Zhang W, Yin K, Chen L. Bacteria-mediated bisphenol a degradation. Appl Microbiol Biotechnol 2013; 97:5681–5689 [View Article][PubMed]
     [Google Scholar]
  3. Jia Y, Nahurira R, Abo-Kadoum MA, Khokhar I, Khokhar I et al. Biodegradation of endocrine disruptor Bisphenol A by Pseudomonas putida strain YC-AE1 isolated from polluted soil, Guangdong, China. BMC Microbiol 2020; 20:11 [View Article][PubMed]
     [Google Scholar]
  4. Zhang C, Zeng G, Yuan L, Yu J, Li J et al. Aerobic degradation of bisphenol A by Achromobacter xylosoxidans strain B-16 isolated from compost leachate of municipal solid waste. Chemosphere 2007; 68:181–190 [View Article][PubMed]
     [Google Scholar]
  5. Suyamud B, Inthorn D, Panyapinyopol B, Thiravetyan P. Biodegradation of Bisphenol A by a Newly Isolated Bacillus megaterium Strain ISO-2 from a Polycarbonate Industrial Wastewater. Water Air Soil Pollut 2018; 229: [View Article]
     [Google Scholar]
  6. Zühlke M-K, Schlüter R, Mikolasch A, Henning A-K, Giersberg M et al. Biotransformation of bisphenol A analogues by the biphenyl-degrading bacterium Cupriavidusbasilensis - a structure-biotransformation relationship. Appl Microbiol Biotechnol 2020; 104:3569–3583 [View Article][PubMed]
     [Google Scholar]
  7. Qin D, Ma C, Lv M, Yu C-P. Sphingobium estronivorans sp. nov. and Sphingobium bisphenolivorans sp. nov., isolated from a wastewater treatment plant. Int J Syst Evol Microbiol 2020; 70:1822–1829 [View Article][PubMed]
     [Google Scholar]
  8. Oshiman K-ichi, Tsutsumi Y, Nishida T, Matsumura Y. Isolation and characterization of a novel bacterium, Sphingomonas bisphenolicum strain AO1, that degrades bisphenol A. Biodegradation 2007; 18:247–255 [View Article][PubMed]
     [Google Scholar]
  9. Kang J-H, Kondo F. Bisphenol a degradation by bacteria isolated from river water. Arch Environ Contam Toxicol 2002; 43:265–269 [View Article][PubMed]
     [Google Scholar]
  10. Xu X-W, Wu Y-H, Wang C-S, Wang X-G, Oren A et al. Croceicoccus marinus gen. nov., sp. nov., a yellow-pigmented bacterium from deep-sea sediment, and emended description of the family Erythrobacteraceae. Int J Syst Evol Microbiol 2009; 59:2247–2253 [View Article][PubMed]
     [Google Scholar]
  11. Huang Y, Zeng Y, Feng H, Wu Y, Xu X. Croceicoccus naphthovorans sp. nov., a polycyclic aromatic hydrocarbons-degrading and acylhomoserine-lactone-producing bacterium isolated from marine biofilm, and emended description of the genus Croceicoccus. Int J Syst Evol Microbiol 2015; 65:1531–1536 [View Article][PubMed]
     [Google Scholar]
  12. Xu L, Sun C, Fang C, Oren A, Xu X-W. Genomic-based taxonomic classification of the family Erythrobacteraceae. Int J Syst Evol Microbiol 2020; 70:4470–4495 [View Article][PubMed]
     [Google Scholar]
  13. Huang Z, Zhang A, Lai Q, Yuan J. Croceicoccus sediminis sp. nov., isolated from coastal sediment. Int J Syst Evol Microbiol 2020; 70:779–784 [View Article][PubMed]
     [Google Scholar]
  14. Lv M, Sun Q, Hu A, Hou L, Li J et al. Pharmaceuticals and personal care products in a mesoscale subtropical watershed and their application as sewage markers. J Hazard Mater 2014; 280:696–705 [View Article][PubMed]
     [Google Scholar]
  15. Hu A, Hou L, Yu C-P. Biogeography of planktonic and benthic archaeal communities in a subtropical eutrophic estuary of China. Microb Ecol 2015; 70:322–335 [View Article][PubMed]
     [Google Scholar]
  16. Liu C, Shao Z. Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 2005; 55:1181–1186 [View Article][PubMed]
     [Google Scholar]
  17. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673–4680 [View Article][PubMed]
     [Google Scholar]
  18. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article][PubMed]
     [Google Scholar]
  19. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
     [Google Scholar]
  20. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article][PubMed]
     [Google Scholar]
  21. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
     [Google Scholar]
  22. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
     [Google Scholar]
  23. Na S-I, Kim YO, Yoon S-H, Ha S-M, Baek I et al. UBCG: up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. J Microbiol 2018; 56:280–285 [View Article][PubMed]
     [Google Scholar]
  24. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article][PubMed]
     [Google Scholar]
  25. Luo R, Liu B, Xie Y, Li Z, Huang W et al.. Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 2015; 4:30 [View Article][PubMed]
     [Google Scholar]
  26. Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 2016; 32:929–931 [View Article][PubMed]
     [Google Scholar]
  27. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article][PubMed]
     [Google Scholar]
  28. Tittsler RP, Sandholzer LA. The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 1936; 31:575–580 [View Article][PubMed]
     [Google Scholar]
  29. Dong X, Cai M. Determinative Manual for Routine Bacteriology Beijing: Scientific Press (English translation); 2001
     [Google Scholar]
  30. Sasaki M, Akahira A, Oshiman K-ichi, Tsuchido T, Matsumura Y. Purification of cytochrome P450 and ferredoxin, involved in bisphenol A degradation, from Sphingomonas sp. strain AO1. Appl Environ Microbiol 2005; 71:8024–8030 [View Article][PubMed]
     [Google Scholar]
  31. Sasaki M, Maki J, Oshiman K, Matsumura Y, Tsuchido T. Biodegradation of bisphenol A by cells and cell lysate from Sphingomonas sp. strain AO1. Biodegradation 2005; 16:449–459 [View Article][PubMed]
     [Google Scholar]
  32. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, Tech., note. 1990
     [Google Scholar]
  33. Komagata K, Suzuki K-I. 4 lipid and cell-wall analysis in bacterial systematics. Methods in Microbiology 19 Elsevier; 1988 pp 161–207
     [Google Scholar]
  34. Wu Y-H, Li G-Y, Jian S-L, Cheng H, Huo Y-Y et al. Croceicoccus pelagius sp. nov. and Croceicoccus mobilis sp. nov., isolated from marine environments. Int J Syst Evol Microbiol 2016; 66:4506–4511 [View Article][PubMed]
     [Google Scholar]
  35. Park S, Won S-M, Oh T-K, Yoon J-H. Croceicoccus ponticola sp. nov., a lipolytic bacterium isolated from seawater. Int J Syst Evol Microbiol 2019; 69:1551–1556 [View Article][PubMed]
     [Google Scholar]
  36. Park S, Jung Y-T, Choi SJ, Yoon J-H. Altererythrobacter aquaemixtae sp. nov., isolated from the junction between the ocean and a freshwater spring. Int J Syst Evol Microbiol 2017; 67:3446–3451 [View Article][PubMed]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.004658
Loading
Croceicoccus bisphenolivorans sp. nov., a bisphenol A-degrading bacterium isolated from seawater
Int J Syst Evol Microbiol 71, 004658 (2021); https://doi.org/10.1099/ijsem.0.004658
/content/journal/ijsem/10.1099/ijsem.0.004658
/content/journal/ijsem/10.1099/ijsem.0.004658
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error