Issue 9, 2023

Discovery of rigid biphenyl Plasmodium falciparum DHFR inhibitors using a fragment linking strategy

Abstract

Plasmodium falciparum dihydrofolate reductase (PfDHFR), a historical target for antimalarials, has been considered compromised due to resistance inducing mutations caused by pyrimethamine (PYR) overexposure. The clinical candidate P218 has demonstrated that inhibitors could efficiently target both PYR-sensitive and PYR-resistant parasites through careful drug design. Yet, P218 clinical development has been limited by its pharmacokinetic profile, incompatible with single dose regimen. Herein, we report the design of new PfDHFR inhibitors using fragment-based design, aiming at improved lipophilicity and overall drug-like properties. Fragment-based screening identified hits binding in the pABA site of the enzyme. Using structure-guided design, hits were elaborated into leads by fragment linking with 2,4-diaminopyrimidine. Resulting compounds display nM range inhibition of both drug-sensitive and resistant PfDHFR, high selectivity against the human isoform, drug-like lipophilicity and metabolic stability. Compound 4 and its ester derivative 3 kill blood stage TM4/8.2 parasite at nM concentrations while showing no toxicity against Vero cells.

Graphical abstract: Discovery of rigid biphenyl Plasmodium falciparum DHFR inhibitors using a fragment linking strategy

Supplementary files

Article information

Article type
Research Article
Submitted
25 May 2023
Accepted
24 Jul 2023
First published
24 Jul 2023

RSC Med. Chem., 2023,14, 1755-1766

Discovery of rigid biphenyl Plasmodium falciparum DHFR inhibitors using a fragment linking strategy

M. Hoarau, P. Sermmai, T. Varatthan, R. Thiabma, T. Jantra, R. Rattanajak, D. Vitsupakorn, J. Vanichtanankul, S. Saepua, Y. Yuthavong, C. Thongpanchang and S. Kamchonwongpaisan, RSC Med. Chem., 2023, 14, 1755 DOI: 10.1039/D3MD00242J

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