Skip to main content
Log in

Identification of olive-tree cultivars with SCAR markers

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

There is an urgent need for the developmentof early identification techniques inolive-trees due to the economic importanceof cultivar identification in periods ofexpansion like now. We have been able toidentify 22 olive-tree cultivars using only10 different, specific, repeatable markers.These markers were designed by the cloningof significant RAPD bands obtained in PCRperformed on bulked DNA to retain thegenetic variability of each cultivar.Clones were partially or totally sequencedand new primers derived from thesesequences were used to obtain SequenceCharacterised Amplified Region (SCAR)fragments. We have demonstrated that theuse of the 10 SCAR markers is enough toprovide a simple, cheap, and reliableprocedure to identify 22 geographicallyrelated olive-tree cultivars.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Adam-Blondon, A.F., M. Sevignac, H. Bannerot & M. Dron, 1998. SCAR, RAPD and RFLP markers linked to a dominant gene (Are) conferring resistance to anthracnose in common bean. Theor Appl Genet 88: 865-870.

    Google Scholar 

  • Besnard, G., P. Baradat & A. Berville, 2001. Genetic relationships in the olive (Olea europaea L.) reflect multilocal selection of cultivars. Theor Appl Genet 102: 251-258.

    Google Scholar 

  • Bewsey, K.E., J.P. Huff & M.E. Johnson, 1991. Rapid isolation and purifiation from agarose gels: the phenol-freeze-fracture method. Biotechniques 10: 724-725.

    Google Scholar 

  • Bodénès, C., S. Joandet, F. Laigret & A. Kremer, 1997. Detection of genomic regions differentiating two closely related oak species Quercus petraea (Matt.) and Quercus robur L. Heredity 78: 433-444.

    Google Scholar 

  • Claros, M.G., R. Crespillo, M.L. Aguilar & F.M. Cánovas, 2000. DNA fingerprinting and classification of geographically related genotypes of olive-tree (Olea europaea L.). Euphytica 116: 131-142.

    Google Scholar 

  • Dulson, J., L.S. Kott & V.L. Ripley, 1998. Efficacy of bulked DNA samples for RAPD DNA fingerprinting of genetically complex Brassica napus cultivars. Euphytica 102: 65-70.

    Google Scholar 

  • Fabbri, A., J.I. Hormaza & V.S. Polito, 1995. Random amplified polymorphic DNA analysis of olive (Olea europaea L.) cultivars. J Amer Soc Hort Sci 120: 538-542.

    Google Scholar 

  • Gemas, V.J., M.J. Rijo-Johansen, R. Tenreiro & P. Fevereiro, 2000. Inter-varietal and intra-varietal analysis of 3 Olea europaea L. cultivars using the RAPD technique. J Hortic Sci Biotechnol 75: 312-319.

    Google Scholar 

  • Gu, W.K., N.F. Weeden, J. Wu & D.H. Wallace, 1995. Large-scale, cost-effective screening of PCR products in marker assisted selection applications. Theor Appl Genet 91: 465-470.

    Google Scholar 

  • Jones, C.J., K.J. Edwards, S. Castaglione, M.O. Winfield, F. Sala, C. van de Wiel, G. Bredemeijer, B. Vosman, M. Matthes, A. Daly, R. Brettschneider, P. Bettini, M. Buiatti, E. Maestri, A. Malcevschi, N. Marmiroli, R. Aert, G. Volckaert, J. Rueda, R. Linacero, A. Vázquez & A. Karp, 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breeding 3: 381-390.

    Google Scholar 

  • Kasai, K., Y. Morikawa, V.A. Sorri, J.P.T. Valkonen, C. Gebhardt & K.N. Watanabe, 2000. Development of SCAR markers to the PVY resistance gene Ryadg based on a common feature of plant disease resistance genes. Genome 43: 1-8.

    Google Scholar 

  • Konieczny, A. & F.M. Ausubel, 1993. A procedure for mapping Arabidopsis mutations using codominant ecotype-specific PCRbased markers. Plant J 4: 403-410.

    Google Scholar 

  • Lawson, W.R., K.C. Goulter, R.J. Henry, G.A. Kong & J.K. Kochman, 1998. Marker-assisted selection for two rust resistance genes in sunflower. Mol Breeding 4: 227-234.

    Google Scholar 

  • Massei, G. & S.E. Hartley, 2000. Disarmed by domestication? Induced responses to browsing in wild and cultivated olive. Oecologia 122: 225-231.

    Google Scholar 

  • McGregor, C.E., C.A. Lambert, M.M. Greyling, J.H. Louw & L. Warnich, 2000. A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm. Euphytica 113: 135-144.

    Google Scholar 

  • Mekuria, G.T., G.G. Collins & M. Sedgley, 1999. Genetic variability between different accessions of some common commercial olive cultivars. J Hortic Sci Biotechnol 74: 309-314.

    Google Scholar 

  • Moury, B., S. Pflieger, A. Blattes, V. Lefebvre & A. Palloix, 2000. A CAPS marker to assist selection of tomato spotted wilt virus (TSWV) resistance in pepper. Genome 43: 137-142.

    Google Scholar 

  • Murray, M. & W.F. Thompson, 1980. Rapid isolation of high molecular-weight plant DNA. Nucleic Acids Res 8: 4321-4325.

    Google Scholar 

  • Naqvi, N.I. & B.B. Chatoo, 1996. Development of a sequence characterized amlified region (SCAR) based indirect selection method for a dominant blast-resistance gene in rice. Genome 39: 26-30.

    Google Scholar 

  • Negi, M.S., M. Devic, M. Delseny & M. Lakshmikumaran, 2000. Identification of AFLP fragments linked to seed coat color in Brassica juncea and conversion to a SCAR marker for rapid selection. Theor Appl Genet 101: 146-152.

    Google Scholar 

  • Page, R.D.M., 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput Applic Biosci 12: 357-358.

    Google Scholar 

  • Paran, I. & R.W. Michelmore, 1993. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85: 985-993.

    Google Scholar 

  • Parasnis, A.S., V.S. Gupta, S.A. Tamhankar & P.K. Ranjekar, 2000. A Highly Reliable Sex Diagnostic PCR Assay for Mass-Screening of Papaya Seedlings. Mol Breeding 6: 337-344.

    Google Scholar 

  • Ruas, P.M., A. Bonifacio, C.F. Ruas, D.J. Fairbanks & W.R. Andersen, 1999. Genetic relationship among 19 accessions of six species of Chenoposium L. by Random Amplified Polymorphic DNA fragments (RAPD). Euphytica 105: 25-32.

    Google Scholar 

  • Sanz-Cortés, F., M.L. Badenes, S. Paz, A. Iñiguez & G. Llacer, 2001. Molecular Characterization of Olive Cultivars Using RAPD Markers. J Amer Soc Hort Sci 126: 7-12.

    Google Scholar 

  • Shah, M.m., Y. Yen, K.S. Gill & P.S. Baezinger, 2000. Comparisons of RFLP and PCR-based markers to detect polymorphism between wheat cultivars. Euphytica 114: 135-142.

    Google Scholar 

  • Strimmer, K. & A. von Haeseler, 1996. Quartet-puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13: 964-969.

    Google Scholar 

  • Vanichanon, A., N.K. Blake, J.M. Martin & L.E. Talbert, 2000. Properties of sequence-tagged-site primer sets influencing repeatability. Genome 43: 47-52.

    Google Scholar 

  • Vergari, G., M. Patumi & G. Fontanazza, 1996. Utilización de los marcadores RAPDs para la caracterización del germoplasma de olivo. Olivae 60: 19-22.

    Google Scholar 

  • Wiesman, Z., N. Avidan, S. Lavee & B. Quebedeaux, 1998. Molecular characterization of common olive varieties in Israel and the West-Bank using randomly amplified polymorphic DNA (RAPD) markers. J Amer Soc Hort Sci 123: 837-841.

    Google Scholar 

  • Williams, J.G.K., M.K. Hanafey, J.A. Rafalski & S.V. Tingey, 1993. Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol 218: 704-740.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bautista, R., Crespillo, R., Cánovas, F.M. et al. Identification of olive-tree cultivars with SCAR markers. Euphytica 129, 33–41 (2003). https://doi.org/10.1023/A:1021528122049

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1021528122049

Navigation