Skip to main content
Log in

Y-ligation: An efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase

  • Published:
Molecular Diversity Aims and scope Submit manuscript

Abstract

Very efficient ligation ofoligodeoxyribonucleotides was attained through asimple molecular construct, which is composed of onestem and two branches (Y-shape), with use of T4 RNAligase. Single-stranded DNAs (naturally, RNAs also) ofmore than 100 nucleotides (even 800 nts) wereconsiderably ligated, approximately as theoreticallyexpected. Owing to the molecular construct adopted,such a tiny amount of ligation products could beamplified to a sufficient amount by PCR and thenrecovered as single-stranded DNAs. This advantage ofbeing amplifiable is shown to be useful for bothcombinatorial chemistry and evolutionary molecularengineering, which deal with a pool of diversity molecules.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Zhang, X.H. and Chiang, V.L., Single-stranded DNA ligation by T4 RNA ligase for PCR cloning of 5 -noncoding fragments and coding sequence of a specific gene, Nucleic Acids Res., 24 (1996) 990–991.

    Google Scholar 

  2. Igloi, G.L., Nonradioactive labeling of RNA, Anal. Biochem., 233 (1996) 124–129.

    Google Scholar 

  3. Kinoshita, Y., Nishigaki, K. and Husimi, Y., Fluorescence-, isotope-or biotin-labeling of the 5 -end of single-stranded DNA/RNA using T4 RNA ligase, Nucleic Acids Res., 25 (1997) 47–48.

    Google Scholar 

  4. Wang, L. and Ruffner, D.E., Oligoribonucleotide circularization by ‘template-mediated’ ligation with T4 RNA ligase: Synthesis of circular hammerhead ribozymes, Nucleic Acids Res., 26 (1998) 2502–2504.

    Google Scholar 

  5. Kinoshita, Y., Nishigaki, K. and Husimi, Y., Enzymatic synthesis of sequencing primers based on a library of tetramers, Chem. Express., 7 (1992) 149–152.

    Google Scholar 

  6. Kinoshita, Y., Nishigaki, K. and Husimi, Y., Strand ligation in a double-stranded DNA by T4 RNA ligase, Chem. Lett., (1996) 797–798.

  7. Flory, P.J., Statistical Mechanics of Chain Molecules, John Wiley & Sons, Inc., New York, NY, 1969, pp. 1–29.

    Google Scholar 

  8. Husimi, Y., Selection and evolution of bacteriophages in cellstat, Adv. Biophys., 25 (1989) 1–43.

    Google Scholar 

  9. Gumport, R.I. and Richardson, R.W., Nucl. Acids Res. Symp., 7 (1980) 167–171.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Nishigaki, K., Taguchi, K., Kinoshita, Y. et al. Y-ligation: An efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase. Mol Divers 4, 187–190 (1998). https://doi.org/10.1023/A:1009644028931

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1009644028931

Navigation