We study the decays of top squarks () and bottom squarks () in the Minimal Supersymmetric Standard Model (MSSM) with complex parameters At,Ab,μ and M1. We show that including the corresponding phases substantially affects the branching ratios of and decays in a large domain of the MSSM parameter space. We find that the branching ratios can easily change by a factor of 2 and more when varying the phases. This could have an important impact on the search for and and the determination of the MSSM parameters at future colliders.