Mini-reviewViral infections and breast cancer – A current perspective
Introduction
Breast cancer is the most common cancer to afflict women and accounts for approximately one quarter of all female cancers [1]. However, most breast cancers are sporadic and efforts to identify a unifying genetic or epigenetic cause can only explain a small proportion of disease. For instance, genetic variants which predispose to disease are present in approximately 30% of cases [2]. Intriguingly, in Queensland, Australia, the incidence of breast cancer increased from 80/100 000 in 1983 to 117/100 000 in 2002; equivalent to a 45% increase in incidence [3]. Similarly, in the United States of America, there was a 40% increase in the incidence over the 25 years to 2002 [4]. This increase in incidence may be linked to environmental factors that contribute to breast cancer development as exemplified by the increased incidence of breast cancer in Japanese women who migrated to the USA [5,6]. There are also accounts of ‘cancer clusters’ where high incidences of breast cancer are reported in work sites and amongst spouses [7,8]. Some of the increase in disease may be however linked to factors such as increased incidence of obesity [9]. Nonetheless, these observations have fuelled interest in a potential infectious aetiology for breast cancer.
Globally, it is estimated that 16% of all human cancers have an infectious origin [10]. Oncogenesis can be induced i) directly by viral genes, such as high-risk Human Papilloma Virus in cervical and mucosal head and neck cancer, ii) by viruses which reduce host immunity such as human immunodeficiency virus, and iii) by viruses which induce oncogenesis via chronic inflammation such as hepatitis B and C. Indeed, in 1936, it was observed that a transmissible form of mammary tumours in the mouse was caused by an extrachromosomal factor transmitted in breast milk [11], later identified as ‘Mouse Mammary Tumour Virus (MMTV)’ [12]. In all of these instances, tumours were associated with a high viral load which made virus discovery and analysis relatively simple.
Many different infectious agents have been investigated as potential carcinogenic agents in breast cancer, including Human Papilloma Viruses (HPV), MMTV and Epstein-Barr virus (EBV) [13]. However, significant controversy exists in the literature as to the possible role of infection with viruses or other pathogens in human breast cancer. This controversy has been fuelled by the ultralow abundance of viral DNA within the tissue. Furthermore, published reports which investigate the presence of virus in breast tissue vary vastly with respect to the nature of pre-analytical phase (e.g. sample type, nature of storage, sample preparation, laboratory practices) and analytical aspects (e.g. detection method, PCR or probe design, use of controls). This raises the fundamental issue of the most appropriate molecular techniques with which to detect the viruses. The debate which surrounds the putative association of viruses with breast cancer has become more polarised with the now standard use of next generation sequencing technologies.
This review will examine the evidence for viral infection as a causative agent in breast cancer and will reference both standard molecular biology techniques in addition to next generation sequencing data. Whilst breast cancer treatment has evolved significantly over the last 30 years, the identification of markers, events or indeed infection associated with disease could be exploited to develop new treatments or induce cures in patients. For this reason, it is important that a unifying rationale toward the analysis and design of pathogen-disease studies; in particular next-generation sequencing data, is used to guide sensible diagnostic and therapeutic interventions in the future.
Section snippets
Guidelines with which to critically review evidence
The original discovery in the 19th century that disease could be caused by microbes led to the development of Koch's Postulates; criteria which sought to establish a causative association between a microbe and disease. These principles were replaced by the Bradford Hill criteria, which recognise more contemporary notions in disease pathogenesis such as obligate carriers and viral infection [14]. These criteria for causality have been further refined to take into account ‘molecular evidence’ [15
Detection of viruses in breast cancer ‘pre’ next generation sequencing
We reviewed the literature which investigated the prevalence of four viruses – Human Papilloma Virus, Epstein-Barr Virus, Mouse Mammary Tumour and Mouse Mammary Tumour–Like Viruses and Bovine Leukaemia Virus in breast tissues using ‘pre’ next generations sequencing technologies. This data highlighted the disparity of prior reports which investigated the presence of viral genomic material in breast tissue. Table 1 summarises the literature, with published reports being deemed as supportive of a
Viral detection in next generation sequencing – sensitivity considerations
Since the advent of next generation sequencing, there have been thousands of cancer genomes and transcriptomes sequenced, primarily through efforts such as The Cancer Genome Atlas. In addition to providing critical information on the altered ‘human’ genetics associated with cancer, next generation sequencing can also detect non-human genetic material. One of the first examples whereby next generation sequencing was applied to a virally mediated cancer was the use of digital transcriptome
Next generation sequencing and viral detection in breast cancer
Several studies have interrogated next generation sequencing data in breast cancer to attempt to identify pathogenic infections. The first such study examined the transcriptomes of 810 breast cancer samples and 104 normal samples from the TCGA sequenced at an average depth of 169 million reads per sample [154]. A custom bioinformatics pipeline was used to screen for known and novel viral transcripts and viral/host fusion events. The authors found no evidence for expression of any viral
Concluding remarks
The issue of specifying thresholds or risk is common in environmental toxicology. What we do know is that a viral load of >10 ppm is considered etiologic or an etiologic contributor in hepatocellular carcinoma and head and neck carcinoma. There is no evidence, that a viral load of <10 ppm is sufficient or capable of contributing to cancer development. However, relative viral load may not be simple to determine since it is assumed that the viral load would be homogenous across a tissue. This may
Conflicts of interest
The Authors declare no conflicts of interest.
Acknowledgements
A.A (APP1065293) was funded by a Research Fellowship from the National Health and Medical Research Council of Australia (NHMRC). O.M.G. is supported by a grant from the Wesley St Andrews Research Institute. Support was also received from the University of Queensland.
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