Expression of citrate carrier gene is activated by ER stress effectors XBP1 and ATF6α, binding to an UPRE in its promoter

https://doi.org/10.1016/j.bbagrm.2014.10.004Get rights and content

Highlights

  • Expression of CiC is activated in cells during ER stress induced by tunicamycin.

  • A functional Unfolded Protein Response Element has been found in CiC promoter.

  • ER stress activation of CiC is under the ATF6α and XBP1 branches of UPR pathway.

  • Increase of ER proteins acetylation upon ER stress is dependent on the CiC expression.

Abstract

The Unfolded Protein Response (UPR) is an intracellular signaling pathway which is activated when unfolded or misfolded proteins accumulate in the Endoplasmic Reticulum (ER), a condition commonly referred to as ER stress. It has been shown that lipid biosynthesis is increased in ER-stressed cells. The Nε-lysine acetylation of ER-resident proteins, including chaperones and enzymes involved in the post-translational protein modification and folding, occurs upon UPR activation. In both ER proteins acetylation and lipid synthesis, acetyl-CoA is the donor of acetyl group and it is transported from the cytosol into the ER. The cytosolic pool of acetyl-CoA is mainly derived from the activity of mitochondrial citrate carrier (CiC). Here, we have demonstrated that expression of CiC is activated in human HepG2 and rat BRL-3A cells during tunicamycin-induced ER stress. This occurs through the involvement of an ER stress responsive region identified within the human and rat CiC proximal promoter. A functional Unfolded Protein Response Element (UPRE) confers responsiveness to the promoter activation by UPR transducers ATF6α and XBP1. Overall, our data demonstrate that CiC expression is activated during ER stress through the binding of ATF6α and XBP1 to an UPRE element located in the proximal promoter of Cic gene. The role of ER stress-mediated induction of CiC expression has been discussed.

Introduction

An essential function of the Endoplasmic Reticulum (ER) is to ensure the correct folding of proteins residing within and transiting along the secretory pathway [1], [2]. When the ER protein-folding capacity falls, a condition of ER-stress is established and leads to the activation of an evolutionarily conserved Unfolded Protein Response (UPR) signaling pathway in order to restore the ER homeostasis [3], [4].

In mammalian cells, UPR signaling pathway consists of three main branches carried out by the UPR transducers Inositol Requiring Protein-1/X-box-Binding Protein-1 (IRE1/XBP1), the Activating Transcription Factor-6 (ATF6), and the Protein Kinase RNA (PKR)-like ER Kinase (PERK), respectively. IRE1, ATF6 and PERK are transmembrane ER proteins, with their N-terminus located in the lumen of the ER and the C-terminus in the cytosol [3], [4]. Both IRE1 and PERK contain an unfolded protein-sensing domain in their N-terminus. In the direct recognition model of UPR activation, accumulating unfolded proteins directly interact with the lumenal domain of IRE1 and PERK, causing their oligomerization-induced activation. In the alternative indirect recognition model, the ER resident chaperone 78-kDa Glucose-Regulated Protein (GRP78, also known as immunoglobulin heavy chain binding protein, BiP) binds the N-terminus of IRE1, ATF6 and PERK, preventing their activation under normal conditions. When ER stress occurs, GRP78 binds unfolded proteins and releases IRE1, PERK, and ATF6, allowing them to transduce the UPR signal [5], [6], [7], [8], [9].

Disruption of ER homeostasis and the consequent activation of UPR have been observed in the liver and adipose tissue of humans with nonalcoholic fatty liver disease (NAFLD) and/or obesity [10]. NAFLD is characterized by fatty infiltration (steatosis) of the liver in the absence of chronic alcohol consumption or other liver diseases. Sources of hepatic lipids in NAFLD include dietary chylomicron remnants, free fatty acids released from adipose tissue triglycerides, and the de novo lipogenesis in which acetyl-CoA is converted in fatty acids [10].

UPR activation is also accompanied by an increase of the status of Nε-lysine acetylation of ER-resident proteins [11], most of them are chaperones and enzymes involved in the post-translational protein modification and folding, including GRP78 [11]. Recent studies reported that inactivation of some histone deacetylases through gene knockdown or treatment with specific inhibitors triggers the hyperacetylation of GRP78 and the activation of the UPR transducers PERK and ATF6 [12], [13]. In the reaction of Nε-lysine acetylation, the donor of the acetyl group is represented by acetyl-CoA, which is transported from the cytosol to the ER lumen by the membrane transporter SLC33A1/AT-1 [14], [15].

The cytosolic pool of acetyl-CoA is mainly derived from glucose or amino acid metabolism through the shuttle citrate/malate catalyzed by citrate carrier (CiC), also known as tricarboxylate carrier, which transports citrate from the mitochondrion to the cytosol [16].

CiC is an integral protein of the mitochondrial inner membrane, which catalyzes the efflux of citrate in exchange for tricarboxylates, dicarboxylate (malate) or phosphoenolpyruvate from the mitochondrial matrix to the cytosol. Here, by the action of ATP-citrate lyase, citrate provides the carbon units for fatty acids and cholesterol biosynthesis [16]. This carrier plays a pivotal role in intermediary metabolism by connecting carbohydrate with lipid metabolism, supplying to cytosol acetyl-CoA, in the form of citrate.

It has been reported that CiC activity is under hormonal [17], [18] and nutritional control [19], [20], [21], [22]. Structural and functional studies of the rat Cic gene promoter led to the characterization of binding sites for transcription factors such as Sterol Regulatory Element-Binding Protein-1 (SREBP-1) and Peroxisomal Proliferator-Activated Receptors (PPARs), both involved in the control of lipid homeostasis [20], [23]. It has also been shown that transport of citrate (acetyl-CoA) from mitochondria to the cytosol is essential for important functions other than fatty acids and cholesterol syntheses, such as the adipogenesis [20], inflammation response [24], maintaining of chromosomes integrity [25], insulin secretion [26], and cancer [27].

Given the importance of CiC as a key protein in lipogenesis and in aforementioned functions, and due to the poor knowledge about the ER stress-mediated activation of lipogenic gene expression, we investigated the modulation of CiC expression during the ER stress and the molecular mechanism underlying this regulation. To this aim, the characterization of the human and rat Cic gene promoter was carried out in order to locate the putative region involved in the activation of Cic gene expression in response to ER stress. Experiments were performed to demonstrate the activation of CiC promoter through the binding of ATF6α and XBP1 to an Unfolded Protein Response Element (UPRE), upon ER stress induction. Finally, results showed that the acetylation status of ER resident proteins was affected by CiC expression. On the basis of these results, a potential role of CiC activation by ER stress was proposed.

Section snippets

Plasmid and reporter vector construction

Four DNA fragments of human CiC promoter (NCBI accession number BC008061.2), sized from − 819 to + 29, − 413 to + 29, − 144 to + 29, and − 60 to + 29 bp, were obtained by PCR using genomic DNA from HepG2 cells as template and the forward primers hCICfor (− 819) (5′ AAGCTTGGTACCGGTACCGGACCTCATAAAAG-3′), hCICfor (− 413) (5′-AAGCTTGGTACCGCTAGCCCCACGTGTTTTCG-3′), hCICfor (− 144) (5′-AAGCTTGGTACCAGGCCTCAGTTTCCCGGCCC-3′), and hCICfor (− 60) (5′-AAGCTTGGTACCGGCCGCCCCGCCCCTGGGAC-3′). The common reverse primer was

Role of ER stress on CiC expression in HepG2 and BRL-3A cells

To investigate the effect of ER stress on Cic expression, the abundance of CiC mRNA was analyzed by real-time qPCR in human HepG2 and in rat BRL-3A cells, both cultured without (control) or with 1 μg/ml tunicamycin. Quantitation of CiC mRNA abundance showed that tunicamycin caused a time-dependent increase of Cic gene expression in ER-stressed HepG2 and BRL-3A cells, reaching maximum levels at 24 h and 12 h, respectively (Fig. 1A). The increase of the abundance of CiC mRNA, induced by ER stressor,

Discussion

Citrate carrier has so far been studied mainly as a protein which provides the cytosol of acetyl-CoA, precursor of the de novo fatty acids and cholesterol syntheses. It represents, indeed, the link between the glycolytic and lipogenic pathways [16].

In recent years, new insights are highlighting the role of the citrate carrier in important cellular functions other than lipid synthesis, such as the adipogenesis [20], maintaining of chromosome integrity [25], inflammation response [24], insulin

Funding

The research discussed in the present study was supported by the Ministero dell'Università e Ricerca (MIUR) (MIUR- FUR ex 60%).

Acknowledgements

We thank prof. Kazutoshi Mori (Department of Biophysics, Kyoto University) for providing the pcDNA3–ATF6 (373) and pcDNA3–XBP1s and prof. Bruno Di Jeso (Department of Biological and Environmental and Sciences and Technologies, University of Salento) for providing the antibody against GRP78.

References (43)

  • H. Yoshida et al.

    XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor

    Cell

    (2001)
  • K. Yamamoto et al.

    Transcriptional induction of mammalian ER quality control proteins is mediated by single or combined action of ATF6 and XBP1

    Dev. Cell

    (2007)
  • Y. Wang et al.

    Activation of ATF6 and an ATF6 DNA binding site by the endoplasmic reticulum stress response

    J. Biol. Chem.

    (2000)
  • H. Yoshida et al.

    A time-dependent phase shift in the mammalian unfolded protein response

    Dev. Cell

    (2003)
  • R. Sriburi et al.

    Coordinate regulation of phospholipid biosynthesis and secretory pathway gene expression in XBP-1(S)-induced endoplasmic reticulum biogenesis

    J. Biol. Chem.

    (2007)
  • D.T. Rutkowski et al.

    UPR pathways combine to prevent hepatic steatosis caused by ER stress-mediated suppression of transcriptional master regulators

    Dev. Cell

    (2008)
  • K. Mori

    Signalling pathways in the unfolded protein response: development from yeast to mammals

    J. Biochem.

    (2009)
  • S.S. Cao et al.

    Targeting endoplasmic reticulum stress in metabolic disease

    Expert Opin. Ther. Targets

    (2013)
  • D. Ron et al.

    Signal integration in the endoplasmic reticulum unfolded protein response

    Nat. Rev. Mol. Cell Biol.

    (2007)
  • B.M. Gardner et al.

    Unfolded proteins are Ire1-activating ligands that directly induce the unfolded protein response

    Science

    (2011)
  • A. Bertolotti et al.

    Dynamic interaction of BiP and ER stress transducers in the unfolded-protein response

    Nat. Cell Biol.

    (2000)
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