Cell
Volume 186, Issue 2, 19 January 2023, Pages 305-326.e27
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Article
Loss of epigenetic information as a cause of mammalian aging

https://doi.org/10.1016/j.cell.2022.12.027Get rights and content
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Highlights

  • Cellular responses to double-stranded DNA breaks erode the epigenetic landscape

  • This loss of epigenetic information accelerates the hallmarks of aging

  • These changes are reversible by epigenetic reprogramming

  • By manipulating the epigenome, aging can be driven forward and backward

Summary

All living things experience an increase in entropy, manifested as a loss of genetic and epigenetic information. In yeast, epigenetic information is lost over time due to the relocalization of chromatin-modifying proteins to DNA breaks, causing cells to lose their identity, a hallmark of yeast aging. Using a system called “ICE” (inducible changes to the epigenome), we find that the act of faithful DNA repair advances aging at physiological, cognitive, and molecular levels, including erosion of the epigenetic landscape, cellular exdifferentiation, senescence, and advancement of the DNA methylation clock, which can be reversed by OSK-mediated rejuvenation. These data are consistent with the information theory of aging, which states that a loss of epigenetic information is a reversible cause of aging.

Keywords

DNA damage
chromatin
aging
epigenetic clock
epigenetic reprogramming
senescence
relocalization of chromatin modifier
RCM

Data and code availability

The NGS datasets generated during this study are available through the BioSample database (NCBI) under BioProject ID: PRJNA554729 and PRJNA655981. Details of the analysis are provided in the STAR Methods section. Any additional information is available from the lead contact upon request.

Cited by (0)

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Present address: Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA

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These authors contributed equally

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Lead contact