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Clinical exome sequencing uncovers an unsuspected diagnosis of Bartter syndrome type 2 in a child with incidentally detected nephrocalcinosis

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Abstract

Nephrocalcinosis is a characteristic feature of both type 1 and type 2 Bartter syndrome. Bartter syndrome type 2 presents antenatally and very early in life. Late-onset presentation with isolated nephrocalcinosis is extremely rare. We describe an 11-year-old girl with incidentally detected medullary nephrocalcinosis on renal ultrasonography. She was clinically suspected to have primary hyperoxaluria based on high urine oxalate. However, clinical exome sequencing revealed a pathogenic missense variant in the KCNJ1 gene leading to the molecular diagnosis of Bartter syndrome type 2. Both parents were heterozygous carriers of the same variant. Subsequent investigations did reveal a mild Bartter syndrome phenotype with mild metabolic alkalosis, high urine chloride and high renin and aldosterone. Our case illustrates phenotypic heterogeneity of Bartter syndrome type 2 and the usefulness of genetic testing in establishing the correct diagnosis and guiding further management in such cases.

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All data analyzed during publishing the case are included in this article. Further enquiries can be directed to the corresponding author.

References

  1. Hoppe B, Leumann E, Millener DS. Urolithiasis and nephrocalcinosis in childhood. In: Geary DF, Schaefer F, editors. Comprehensive pediatric nephrology. Philadelphia: Elsevier; 2008. p. 499–525.

    Chapter  Google Scholar 

  2. Devuyst O, Belge H, Konrad M, Jeunemaitre X, Zennaro M. Renal tubular disorders of electrolyte regulation in children. In: Avner ED, Harmon WE, Niaudet P, Yoshikawa N, Emma F, Goldstein SL, editors. Pediatric nephrology. 7th ed. Heidelberg: Springer; 2016. p. 1202–15.

    Google Scholar 

  3. Braun DA, Lawson JA, Gee HY, Halbritter J, Shril S, Tan W, et al. Prevalence of monogenic causes in pediatric patients with nephrolithiasis or nephrocalcinosis. Clin J Am Soc Nephrol. 2016;11(4):664–72.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  4. Daga A, Majmundar AJ, Braun DA, Gee HY, Lawson JA, Shril S, et al. Whole exome sequencing frequently detects a monogenic cause in early onset nephrolithiasis and nephrocalcinosis. Kidney Int. 2018;93(1):204–13.

    Article  PubMed  CAS  Google Scholar 

  5. Halbritter J, Baum M, Hynes AM, Rice SJ, Thwaites DT, Gucev ZS, et al. Fourteen monogenic genes account for 15% of nephrolithiasis/nephrocalcinosis. J Am Soc Nephrol. 2015;26(3):543–51.

    Article  PubMed  CAS  Google Scholar 

  6. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405–24.

    Article  PubMed  PubMed Central  Google Scholar 

  7. Welling PA, Ho K. A comprehensive guide to the ROMK potassium channel: form and function in health and disease. Am J Physiol Renal Physiol. 2009;297(4):F849–63.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  8. Vollmer M, Koehrer M, Topaloglu R, Strahm B, Omran H, Hildebrandt F. Two novel mutations of the gene for Kir 1.1 (ROMK) in neonatal Bartter syndrome. Pediatr Nephrol. 1998;12(1):69–71.

    Article  PubMed  CAS  Google Scholar 

  9. Huang L, Luiken GP, van Riemsdijk IC, Petrij F, Zandbergen AA, Dees A. Nephrocalcinosis as adult presentation of Bartter syndrome type II. Neth J Med. 2014;72(2):91–3.

    PubMed  CAS  Google Scholar 

  10. Srivastava S, Li D, Edwards N, Hynes AM, Wood K, Al-Hamed M, et al. Identification of compound heterozygous KCNJ1 mutations (encoding ROMK) in a kindred with Bartter’s syndrome and a functional analysis of their pathogenicity. Physiol Rep. 2013;1(6):e00160.

    Article  PubMed  PubMed Central  Google Scholar 

  11. Li J, Hu S, Nie Y, Wang R, Tan M, Li H, et al. A novel compound heterozygous KCNJ1 gene mutation presenting as late-onset Bartter syndrome: case report. Medicine (Baltimore). 2019;98(34):e16738.

    Article  Google Scholar 

  12. Gollasch B, Anistan YM, Canaan-Kühl S, Gollasch M. Late-onset Bartter syndrome type II. Clin Kidney J. 2017;10(5):594–9.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  13. Sharma A, Linshaw MA. A novel compound heterozygous ROMK mutation presenting as late onset Bartter syndrome associated with nephrocalcinosis and elevated 1,25(OH) (2) vitamin D levels. Clin Exp Nephrol. 2011;15(4):572–6.

    Article  PubMed  CAS  Google Scholar 

  14. Mansilla MA, Sompallae RR, Nishimura CJ, Kwitek AE, Kimble MJ, Freese ME, et al. Targeted broad-based genetic testing by next-generation sequencing informs diagnosis and facilitates management in patients with kidney diseases. Nephrol Dial Transplant. 2021;36(2):295–305.

    Article  PubMed  Google Scholar 

  15. Delio M, Patel K, Maslov A, Marion RW, McDonald TV, Cadoff EM, et al. Development of a targeted multi-disorder high-throughput sequencing assay for the effective identification of disease-causing variants. PLoS ONE. 2015;10(7):e0133742.

    Article  PubMed  PubMed Central  Google Scholar 

  16. Braun DA, Schueler M, Halbritter J, Gee HY, Porath JD, Lawson JA, et al. Whole exome sequencing identifies causative mutations in the majority of consanguineous or familial cases with childhood-onset increased renal echogenicity. Kidney Int. 2016;89(2):468–75.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  17. Connaughton DM, Hildebrandt F. Personalized medicine in chronic kidney disease by detection of monogenic mutations. Nephrol Dial Transplant. 2020;35(3):390–7.

    Article  PubMed  CAS  Google Scholar 

  18. Hay E, Cullup T, Barnicoat A. A practical approach to the genomics of kidney disorders. Pediatr Nephrol. 2021;37:21–35.

    Article  PubMed  Google Scholar 

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Contributions

AS conceptualized the manuscript, collected clinical information and wrote the manuscript. PP did the exome sequencing, interpreted the information, produced the report and helped in writing the manuscript. KV helped in collecting clinical data and helped in writing the manuscript. SK collected the data and helped in writing the manuscript. HP corrected the manuscript. AS will act as guaranter of the article.

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Correspondence to Anshuman Saha.

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Saha, A., Pande, P., Vala, K. et al. Clinical exome sequencing uncovers an unsuspected diagnosis of Bartter syndrome type 2 in a child with incidentally detected nephrocalcinosis. CEN Case Rep 11, 417–421 (2022). https://doi.org/10.1007/s13730-022-00694-2

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  • DOI: https://doi.org/10.1007/s13730-022-00694-2

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