Skip to main content
Log in

A Simple Method of Predicting Autumn Leaf Coloring Date Using Machine Learning with Spring Leaf Unfolding Date

  • Original Article
  • Published:
Asia-Pacific Journal of Atmospheric Sciences Aims and scope Submit manuscript

Abstract

Predicting plant phenology is considered the foundational for the forecast of ecosystem function and dynamics from species level to global level. However, the exact prediction of plant phenology remains limited because of the challenges associated with adding exact environmental and physiological cues to numerical models. In this study, we developed a simple data-based prediction model for leaf coloring dates of temperate deciduous trees by applying machine learning to datasets obtained from the newly established South Korean national-scale phenology network (NPN). Ground observations of spring leaf unfolding dates for 2009–2018 obtained from NPN together with data on the environmental drivers of leaf coloring (summer mean temperature, altitude) were utilized for the model. The model can be evaluated to have simulated the characteristics of observed leaf coloring dates relatively accurate, with only a two-day difference between the average observed and predicted leaf coloring dates. In addition, the model yielded an RMSE value of approximately 7 days, which is within the acceptable error criteria when compared to the sampling frequency, despite the use of only three input variables. Data-based machine learning using existing spring leaf unfolding data as an input help us predict autumn phenology better, even without precise species-specific physiological knowledge on leaf coloring mechanisms. Consequently, a phenology network across the globe based on steady observations will be favorable datasets for a phenology prediction model that can be applied widely.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

Data Availability

The datasets for the temperature are freely available from https://data.kma.go.kr/. The leaf unfolding, coloring dates and specific information of each stations are available from the data developers upon request.

Code Availability

Python code: available and open to researchers.

References

  • Archetti, M, Richardson, A.D, O’Keefe, J, Delpierre, N.: Predicting Climate Change Impacts on the Amount and Duration of Autumn Colors in a New England Forest. PLoS ONE. 8(3), e57373(2013)

    Article  Google Scholar 

  • Breiman, L: Random forests. Mach. Learn. 45, 5–32 (2001)

    Article  Google Scholar 

  • Buermann, W., Bikash, P.R., Jung, M., Burn, D.H., Reichstein, M.: Earlier springs decrease peak summer productivity in North American boreal forests. Environ. Res. Lett. 8(2), 024027 (2013)

  • Czernecki, B, Nowosad, J, Jabłońska, K: Machine learning modeling of plant phenology based on coupling satellite and gridded meteorological dataset. Int. J. Biometeorol. 62(7), 1297–1309 (2018)

    Article  Google Scholar 

  • De’Ath, G, Fabricius, KE: Classification and regression trees: A powerful yet simple technique for ecological data analysis. Ecology. 81(11), 3178–3192 (2000)

    Article  Google Scholar 

  • Delpierre, N, Dufrêne, E, Soudani, K, Ulrich, E, Cecchini, S, Boé, J, François, C: Modelling interannual and spatial variability of leaf senescence for three deciduous tree species in France. Agric. For. Meteorol. 149(6–7), 938–948 (2009)

  • Friedman, JM, Roelle, JE, Cade, BS: Genetic and environmental influences on leaf phenology and cold hardiness of native and introduced riparian trees. Int. J. Biometeorol. 55(6), 775–787 (2011)

  • Fu, YSH, Campioli, M, Vitasse, Y, De Boeck, HJ, Van Den Berge, J, AbdElgawad, H, Asard, H, Piao, S, Deckmyn, G, Janssens, IA: Variation in leaf flushing date influences autumnal senescence and next year’s flushing date in two temperate tree species. Proc. Natl. Acad. Sci. U.S.A. 111(20), 7355–7360 (2014)

  • Fu, YH, Piao, S, Delpierre, N, Hao, F, Hänninen, H, Liu, Y, Sun, W, Janssens, IA, Campioli, M: Larger temperature response of autumn leaf senescence than spring leaf-out phenology. Glob. Change Biol. 24(5), 2159–2168 (2018)

  • Fu, Y, Li, X, Zhou, X, Geng, X, Guo, Y, Zhang, Y: Progress in plant phenology modeling under global climate change. Sci. China Earth Sci. 63(9), 1237–1247 (2020)

    Article  Google Scholar 

  • Garreta, R, Moncecchi, G: Learning scikit-learn: Machine Learning in Python. Packt Publishing Ltd, Birmingham (2013)

  • Jeong, SJ, Ho, CH, Gim, HJ, Brown, ME: Phenology shifts at start vs. end of growing season in temperate vegetation over the Northern Hemisphere for the period 1982–2008. Glob. Chang. Biol. 17(7), 2385–2399 (2011)

    Article  Google Scholar 

  • Jeong, SJ, Medvigy, D: Macroscale prediction of autumn leaf coloration throughout the continental United States. Glob. Ecol. Biogeogr. 23(11), 1245–1254 (2014)

    Article  Google Scholar 

  • Jeong, S: Autumn greening in a warming climate. Nat. Clim. Chang. 10, 712–713 (2020)

    Article  Google Scholar 

  • Keenan, T.F., Richardson, A.D.: The timing of autumn senescence is affected by the timing of spring phenology: Implications for predictive models. Glob. Chang. Biol. 21(7), 2634–2641 (2015)

    Article  Google Scholar 

  • Körner, C, Basler, D: Phenology under global warming. Science. 327(5972), 1461–1462 (2010)

  • Kuhn, M, Johnson, K: Applied predictive modeling. Springer, New York (2013)

  • Lam, E.: Controlled cell death, plant survival and development. Nat. Rev. Mol. Cell Biol. 5(4), 305–315 (2004)

  • Lebourgeois, F, Pierrat, JC, Perez, V, Piedallu, C, Cecchini, S, Ulrich, E: Simulating phenological shifts in French temperate forests under two climatic change scenarios and four driving global circulation models. Int. J. Biometeorol. 54(5), 563–581 (2010)

  • Liu, Q., Fu, Y.H., Zhu, Z., Liu, Y., Liu, Z., Huang, M., Janssens, I.A., Piao, S.: Delayed autumn phenology in the Northern Hemisphere is related to change in both climate and spring phenology. Glob. Chang. Biol. 22(11), 3702–3711 (2016)

    Article  Google Scholar 

  • Meier, U: Growth stages of mono-and dicotyledonous plants. Blackwell Wissenschafts-Verlag., Berlin (1997)

  • Nagai, S., Saitoh, T.M., Miura, T.: Peak autumn leaf colouring along latitudinal and elevational gradients in Japan evaluated with online phenological data. Int. J. Biometeorol. 64(10), 1743–1754 (2020)

  • Park, H., Jeong, S.: Leaf area index in the Earth system models: how the key variable of vegetation seasonality works in climate projections. Environ. Res. Lett. 16(3), 034027 (2021)

  • Piao, S., Friedlingstein, P., Ciais, P., Viovy, N., Demarty, J.: Growing season extension and its impact on terrestrial carbon cycle in the Northern Hemisphere over the past 2 decades. Glob. Biogeochem. Cycles 21(3), 1–11 (2007)

    Article  Google Scholar 

  • Piao, S, Ciais, P, Friedlingstein, P, Peylin, P, Reichstein, M, Luyssaert, S, Margolis, H, Fang, JY, Barr, A, Chen, AP, Grelle, A, Hollinger, DY, Laurila, T, Lindroth, A, Richardson, AD, Vesala, T: Net carbon dioxide losses of northern ecosystems in response to autumn warming. Nature. 451(7174), 49–52 (2008)

    Article  Google Scholar 

  • Pyung, OL, Hyo, JK, Hong, GN: Leaf senescence. Annu. Rev. Plant Biol. 58, 115–136 (2007)

  • Richardson, A.D., Anderson, R.S., Arain, M.A., Barr, A.G., Bohrer, G., Chen, G.S., Chen, J.M., Ciais, P., Davis, K.J., Desai, A.R., Dietze, M.C., Dragoni, D., Garrity, S.R., Gough, C.M., Grant, R., Hollinger, D.Y., Margolis, H.A., McCaughey, H., Migliavacca, M., Monson, R.K., Munger, J.W., Poulter, B., Raczka, B.M., Ricciuto, D.M., Sahoo, A.K., Schaefer, K., Tian, H.Q., Vargas, R., Verbeeck, H., Xiao, J.F., Xue, Y.K.: Terrestrial biosphere models need better representation of vegetation phenology: Results from the North American Carbon Program Site Synthesis. Glob. Chang. Biol. 18(2), 566–584 (2012)

    Article  Google Scholar 

  • Rodriguez-Galiano, VF, Chica-Rivas, M: Evaluation of different machine learning methods for land cover mapping of a Mediterranean area using multi-seasonal Landsat images and Digital Terrain Models. Int. J. Digit. Earth 7(6), 492–509 (2014)

  • Rodriguez-Galiano, VF, Sanchez-Castillo, M, Dash, J, Atkinson, PM, Ojeda-Zujar, J: Modelling interannual variation in the spring and autumn land surface phenology of the European forest. Biogeosciences. 13(11), 3305–3317 (2016)

    Article  Google Scholar 

  • Rudin, C., Radin, J.: Why are we using black box models in ai when we don’t need to? A lesson from an explainable AI competition. Harv. Data Sci. Rev. 1(2), 1–9 (2019)

    Google Scholar 

  • Zani, D, Crowther, TW, Mo, L, Renner, SS, Zohner, CM: Increased growing-season productivity drives earlier autumn leaf senescence in temperate trees. Science 370(6520), 1066–1071 (2020)

    Article  Google Scholar 

Download references

Acknowledgements

This work was supported by the National Research Foundation (NRF) of Korea and a grant funded by the Government of Korea (NRF-2019R1A2C3002868).

Funding

This work was supported by the National Research Foundation (NRF) of Korea and a grant funded by the Government of Korea (NRF-2019R1A2C3002868).

Author information

Authors and Affiliations

Authors

Contributions

Sehyun Lee and Sujong Jeong conceived the ideas and designed methodology; Sehyun Lee and Jongho Kim analysed the data; All authors led the writing of the manuscript. All authors contributed critically to the drafts and gave final approval for publication.

Corresponding author

Correspondence to Sujong Jeong.

Ethics declarations

Conflicts of Interest/Competing Interests

The authors declare that they have no conflicts of interest.

Additional information

Communicated by Seon Tae Kim.

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Lee, S., Jeong, S., Park, CE. et al. A Simple Method of Predicting Autumn Leaf Coloring Date Using Machine Learning with Spring Leaf Unfolding Date. Asia-Pacific J Atmos Sci 58, 219–226 (2022). https://doi.org/10.1007/s13143-021-00251-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13143-021-00251-4

Keywords

Navigation