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Devosia lucknowensis sp. nov., a bacterium isolated from hexachlorocyclohexane (HCH) contaminated pond soil

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Abstract

Strain L15T, a Gram-negative, motile, orange colored bacterium was isolated from pond soil in the surrounding area of a hexachlorocyclohexane (HCH) dump site at Ummari village in Lucknow, India. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain L15T belongs to the family Hyphomicrobiaceae in the order Rhizobiales. Strain L15T showed highest 16S rRNA gene sequence similarity to Devosia chinhatensis IPL18T (98.0%). Chemotaxonomic data revealed that the major fatty acids were summed feature 8 (C18:1 ω7c and/or C18:1 ω6c), C18:1 ω7c 11-methyl, C16:0 and C18:0. The major polar lipids of strain L15T were diphosphatidylglycerol and phosphatidylglycerol. The genomic DNA G+C content of strain L15T was 59.8%. Polyamine profile showed the presence of sym-homospermidine with traces of putrescine. Ubiquinone Q-10 was the major respiratory quinone present. Based on these data, strain L15T (=CCM 7977T =DSM 25398T) was classified as a type strain of a novel species, for which the name Devosia lucknowensis sp. nov. is proposed.

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References

  • Arden-Jones, M.P., McCarthy, A.J., and Cross, T. 1979. Taxonomic and serological studies on Micropolyspora faeni and Micropolyspora strains from soil bearing the specific epithet rectivirgula. J. Gen. Microbiol.115, 343–354.

    Article  Google Scholar 

  • Bautista, V.V., Monsalud, R.G., and Yokota, A. 2010. Devosia yakushimensis sp. nov., isolated from root nodules of Pueraria lobata (Willd.) Ohwi. Int. J. Syst. Evol. Microbiol.60, 627–632.

    Article  PubMed  CAS  Google Scholar 

  • Bligh, E.G. and Dyer, W.J. 1959. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol.37, 911–917.

    Article  PubMed  CAS  Google Scholar 

  • Busse, J. and Auling, G. 1988. Polyamine patterns as a chemotaxonomic marker within the Proteobacteria. Syst. Appl. Microbiol.11, 1–8.

    Article  CAS  Google Scholar 

  • Christensen, W.B. 1946. Urea decomposition as a means of differentiating Proteus and para-colon cultures from each other and from Salmonella and Shigella types. J. Bacteriol.52, 461–466.

    PubMed  CAS  Google Scholar 

  • Collins, M.D. and Jones, D. 1980. Lipids in the classification and identification of coryneform bacteria containing peptidoglycan based on 2,4-diamino butyric acid (DAB). J. Appl. Bacteriol.48, 459–470.

    Article  CAS  Google Scholar 

  • Cowan, S.T. and Steel, K.J. 1965. Manual for the Identification of Medical Bacteria. Cambridge University Press, London, UK.

    Google Scholar 

  • Dadhwal, M., Singh, A., Prakash, O., Gupta, S.K., Kumari, K., Sharma, P., Jit, S., Verma, M., Holliger, C., and Lal, R. 2009. Proposal of biostimulation for hexachlorocyclohexane (HCH) decontamination and characterization of culturable bacterial community from high dose point HCH contaminated sites. J. Appl. Microbiol.106, 381–392.

    Article  PubMed  CAS  Google Scholar 

  • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol.17, 368–376.

    Article  PubMed  CAS  Google Scholar 

  • Garg, N., Bala, K., and Lal, R. 2011. Sphingobium lucknowense sp. nov., a hexachlorocyclohexane (HCH) degrading bacterium isolated from HCH contaminated soil. Int. J. Syst. Evol. Microbiol.62, 618–623.

    Article  PubMed  Google Scholar 

  • Gonzalez, J.M. and Saiz-Jimenez, C. 2002. A fluorimetric method for the estimation of G+C mol% content in microorganism by thermal denaturation temperture. Environ. Microbiol.4, 770–773.

    Article  PubMed  CAS  Google Scholar 

  • Hamana, K., Sakamoto, A., Tachiyanagi, S., Terauchi, E., and Takeuchi, M. 2003. Polyamine profiles of some members of the Alpha subclass of the class Proteobacteria: Polyamine analysis of twenty recently described genera. Microbiol. Cult. Coll.19, 13–21.

    Google Scholar 

  • Jindal, S., Dua, A., and Lal, R. 2012. Sphingopyxis indica sp. nov., isolated from a high dose point hexachlorocyclohexane (HCH) contaminated dumpsite. Int. J. Syst. Evol. Microbiol. doi:10.1099/ijs.0.040840-0.

    Google Scholar 

  • Jukes, T.H. and Cantor, C.R. 1969. Evolution of protein molecules. In Munro, H.N. (ed.) Mammalian protein metabolism, vol. III, pp. 21–132. Academic Press, New York, USA.

    Google Scholar 

  • Kim, O.S., Cho, Y.J., Lee, K., Yoon, S.H., Kim, M., Na, H., Park, S.C., Jeon, Y.S., Lee, J.H., Yi, H., andet al. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol.62, 716–721.

    Article  PubMed  CAS  Google Scholar 

  • Kumar, M., Verma, M., and Lal, R. 2008. Devosia chinhatensis sp. nov., isolated from Hexachlorocyclohexane (HCH) dump site in India. Int. J. Syst. Evol. Microbiol.58, 861–865.

    Article  PubMed  CAS  Google Scholar 

  • Kuykendall, L.D., Roy, M.A., Neill, J.J., and Devine, T.E. 1988. Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradorhizobium japonicum. Int. J. Syst. Evol. Bacteriol.38, 358–361.

    Article  CAS  Google Scholar 

  • Lee, S.D. 2007. Devosia subaequoris sp. nov., isolated from beach sediment. Int. J. Syst. Evol. Microbiol.57, 2212–2215.

    Article  PubMed  CAS  Google Scholar 

  • McCarthy, A.J. and Cross, T. 1984. A taxonomic study of Thermomonospora and other monosporic actinomycetes. J. Gen. Microbiol.130, 5–25.

    Google Scholar 

  • Miller, L.T. 1982. Single derivatization method for the routine analysis of whole-cell fatty acid methyl esters, including hydroxyl acids. J. Clin. Microbiol.16, 584–586.

    PubMed  CAS  Google Scholar 

  • Nakagawa, Y., Sakane, T., and Yokota, A. 1996. Transfer of “Pseudomonas riboflavina” (Foster 1944), a gram-negative, motile rod with long-chain 3-hydroxy fatty acids, to Devosia riboflavina gen. nov., sp. nov., nom. rev. Int. J. Syst. Bacteriol.46, 16–22.

    Article  PubMed  CAS  Google Scholar 

  • Rivas, R., Willems, A., Subba-Rao, N.S., Mateos, P.F., Dazzo, F.B., Kroppenstedt, R.M., Martínez-Molina, E., Gillis, M., and Velázquez, E. 2003. Description of Devosia neptuniae sp. nov. that nodulates and fixes nitrogen in symbiosis with Neptunia natans, an aquatic legume from India. Syst. Appl. Microbiol.26, 47–53.

    Article  PubMed  CAS  Google Scholar 

  • Ryu, S.H., Chung, B.S., Le, N.T., Jang, H.H., Yun, P.Y., Park, W., and Jeon, C.O. 2008. Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea. Int. J. Syst. Evol. Microbiol.58, 633–636.

    Article  PubMed  CAS  Google Scholar 

  • Saxena, A., Anand, S., Dua, A., Sangwan, N., Khan, F., and Lal, R. 2012. Novosphingobium lindaniclasticum sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from HCH Dumpsite. Int. J. Syst. Evol. Microbiol. doi:10.1099/ijs.0.045443-0.

    Google Scholar 

  • Smibert, R.M. and Krieg, N.R. 1994. Phenotypic characterization, Methods for General and Molecular Bacteriology, pp. 607–654. In Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds.). American Society for Microbiology, Washington, D.C., USA.

  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res.25, 4876–4882.

    Article  PubMed  CAS  Google Scholar 

  • Tourova, T.P. and Antonov, A.S. 1987. Identification of microorganisms by rapid DNA-DNA hybridization. Meth. Microbiol.19, 333–355.

    Article  Google Scholar 

  • Van de Peer, Y. and De Wachter, Y. 1994. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci.10, 569–570.

    PubMed  Google Scholar 

  • Vanbroekhoven, K., Ryngaert, A., Bastiaens, L., Wattiau, P., Vancanneyt, M., Swings, J., Mot, R.D., and Springael, D. 2004. Streptomycin as a selective agent to facilitate recovery and isolation of introduced and indigenous Sphingomonads from environmental samples. Environ. Microbiol.6, 1123–1136.

    Article  PubMed  CAS  Google Scholar 

  • Vanparys, B., Heylen, K., Lebbe, L., and De Vos, P. 2005. Devosia limi sp. nov., isolated from a nitrifying inoculum. Int. J. Syst. Evol. Microbiol.55, 1997–2000.

    Article  PubMed  CAS  Google Scholar 

  • Verma, M., Kumar, M., Dadhwal, M., Kaur, J., and Lal, R. 2009. Devosia albogilva sp. nov. and Devosia crocina sp. nov., isolated from a hexachlorocyclohexane dump site. Int. J. Syst. Evol. Microbiol.59, 795–799.

    Article  PubMed  CAS  Google Scholar 

  • Wayne, L.G., Brenner, D.J., Colwell, R.R., Grimont, P.A.D., Kandler, O., Krichevsky, L.H., Moore, L.H., Moore, W.E.C., Murray, R.G.E., Stackebrandt, E., andet al. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematic. Int. J. Syst. Evol. Microbiol.37, 463–464.

    Google Scholar 

  • Yoo, S.-H., Weon, H.Y., Kim, B.Y., Hong, S.-B., Kwon, S.-W., Cho, Y.-H., Go, S.-J., and Stackebrandt, E. 2006. Devosia soli sp. nov., isolated from greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol.56, 2689–2692.

    Article  PubMed  CAS  Google Scholar 

  • Yoon, J.-H., Kang, S.-J., Park, S., and Oh, T.-K. 2007. Devosia insulae sp. nov., isolated from soil, and emended description of the genus Devosia. Int. J. Syst. Evol. Microbiol.57, 1310–1314.

    Article  PubMed  CAS  Google Scholar 

  • Zhang, D.C., Redzic, M., Liu, H.C., Zhou, Y.G., Schinner, F., and Margesin, R. 2012. Devosia psychrophila sp. nov. and Devosia glacialis sp. nov., two novel bacteria from alpine glacier cryoconite. Int. J. Syst. Evol. Microbiol.62, 710–715.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Rup Lal.

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Dua, A., Malhotra, J., Saxena, A. et al. Devosia lucknowensis sp. nov., a bacterium isolated from hexachlorocyclohexane (HCH) contaminated pond soil. J Microbiol. 51, 689–694 (2013). https://doi.org/10.1007/s12275-013-2705-9

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