Abstract
We aimed to determine the molecular mechanisms of antibiotic resistance in coliforms isolated from ten rivers in northern region of Turkey. A total of 183 isolates were tested for antimicrobial susceptibility by disk diffusion and agar dilution methods. Resistance to ampicillin, streptomycin, trimethoprim, tetracycline, and chloramphenicol was detected in 58%, 51.9%, 24%, 28.4%, and 12.5%, respectively. Twelve (6.5%) phylogenetically distant organisms were detected to harbor self-transmissible plasmids ranging 52 to >147 kb in sizes. Resistances to ampicillin, tetracycline, trimethoprim, streptomycin, and nalidixic acid were commonly transferable traits. Transferable nalidixic acid-resistant strains harbored qnrS gene, which was the first report of plasmid-mediated quinolone resistance in bacteria of environmental origin in Turkey. Fourteen and five coliforms harbored class 1 and class 2 integrons, respectively, and some of them were located on transferable plasmids. Sequence analyses of variable regions of the class 1 and 2 integrons harbored various gene cassettes, dfrA1, dfr2d, dfrA7, dfrA16, dfrA17, aadA1, aadA5, bla oxA-30, and sat1. A gene cassette array, dfrA16 has been demonstrated for the first time in a Citrobacter koseri isolate. Class 1 and class 2-bearing strains were clustered in different groups by BOX-PCR fingerprinting. Rivers in the northern Turkey may act as receptacle for the multi-drug resistant enterobacteria and can serve as reservoirs of the antimicrobial resistance determinants in the environment. The actual risk to public health is the transfer of resistance genes from the environmental bacteria to human pathogens.
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Alpay-Karaoglu, S., O.B. Ozgumus, E. Sevim, F. Kolayli, A. Sevim, and P. Yesilgil. 2007. Investigation of antibiotic resistance profile and TEM-type β-lactamase gene carriage of ampicillin-resistant Escherichia coli strains isolated from drinking water. Ann. Microbiol. 57, 281–288.
Altschul, S.F., T.L. Madden, A.A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389–3402.
Andersen, S.R. and R.A. Sanda. 1994. Distribution of tetracycline resistance among gram-negative bacteria isolated from polluted and unpolluted marine sediments. Appl. Environ. Microbiol. 60, 908–912.
Ash, R.J., B. Mauck, and M. Morgan. 2002. Antibiotic resistance of gram-negative bacteria in rivers, United States. Emerg. Infect. Dis. 8, 713–716.
Ausubel, F.M., R. Brient, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl. 1995. Short Protocols in Molecular Biology, 2nd ed., John Willey & Sons, New York, N.Y., USA.
AWWA-American Water Works Association (AWWA). 1998. Standard methods for the examination of water and wastewater, 20th ed. American Public Health Association, American Water Works Association and Water Environment Federation, Washington, D.C., USA.
Biyela, P.T., J. Lin, and C.C. Bezuidenhout. 2004. The role of aquatic ecosystems as reservoirs of antibiotic resistant bacteria and antibiotic resistance genes. Water Sci. Technol. 50, 45–50.
Brenner, D.J. 1986. Facultatively anaerobic gram-negative rods, p. 408–516. In N.R. Krieg and J.G. Holt (eds.), Bergey’s Manual of Systematic Bacteriology, Vol. 1. Williams & Wilkins, Baltimore, USA.
Carattoli, A. 2001. Importance of integrons in the diffusion of resistance. Vet. Res. 32, 243–259.
Castanheira, M., A.S. Pereira, A.G. Nicoletti, A.C.C. Pignatari, A.L. Barth, and A.C. Gales. 2007. First report of plasmid-mediated qnrA1 in a ciprofloxacin-resistant Escherichia coli strain in Latin America. Antimicrob. Agents Chemother. 51, 1527–1529.
Chang, L.L., H.H. Lin, C.Y. Chang, and P.L. Lu. 2007. Increased incidence of class 1 integrons in trimethoprim/sulfamethoxazole-resistant clinical isolates of Stenotrophomonas maltophila. J. Antimicrob. Chemother. 59, 1038–1045.
CLSI-Clinical and Laboratory Standards Institute (CLSI). 2003a. Performance standards for antimicrobial disk susceptibility tests; 8th ed., Approved standard M2-A8., CLSI, Wayne, PA, USA.
CLSI-Clinical and Laboratory Standards Institute (CLSI). 2003b. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically. Vol. 23, No. 2. 6th ed. Approved standard M7-A6, CLSI, Wayne, PA, USA.
Col, N.F. and R.W. O’Connor. 1987. Estimating worldwide current antibiotic usage: Report of task force I. Rev. Infect. Dis. 9, S232–243.
Fluit, A.C. and F.J. Schmitz. 2004. Resistance integrons and super-integrons. Clin. Microbiol. Infect. 10, 272–288.
Grinsted, J., F. De La Cruz, and R. Schmitt. 1990. The Tn21 subgroup of bacterial transposable elements. Plasmid 24, 163–189.
Hall, R.M. and C.M. Collis. 1995. Mobile gene cassettes and integrons: capture and spread of genes by site-specific recombination. Mol. Microbiol. 15, 593–600.
Hall, R.M. and H.W. Stokes. 1993. Integrons: novel DNA elements which capture genes by site-specific recombination. Genetica 90, 115–132.
Hansson, K., L. Sundström, A. Pelletier, and P.H. Roy. 2002. IntI2 integron integrase in Tn7. J. Bacteriol. 184, 1712–1721.
Hu, J., J. Shi, H. Chang, D. Li, M. Yang, and Y. Kamagata. 2008. Phenotyping and genotyping of antibiotic-resistant Escherichia coli isolated from a natural river basin. Environ. Sci. Technol. 42, 3415–3420.
Jones, J.G., S. Gardener, B.M. Simon, and R.W. Pickup. 1986. Antibiotic resistant bacteria in Windermere and two remote upland tarns in the English Lake district. J. Appl. Bacteriol. 60, 443–453.
Kado, C.I. and S.T. Liu. 1981. Rapid procedure for detection and isolation of large and small plasmids. J. Bacteriol. 145, 1365–1373.
Kim, T.E., Y.W. Jeong, S.H. Cho, S.J. Kim, and H.J. Kwon. 2007. Chronological study of antibiotic resistances and their relevant genes in Korean avian pathogenic Escherichia coli isolates. J. Clin. Microbiol. 45, 3309–3315.
Koksal, F., N. Oguzkurt, M. Samasti, and K. Altas. 2007. Prevalence and antimicrobial resistance patterns of Aeromonas strains isolated from drinking water samples in Istanbul, Turkey. Chemotherapy 53, 30–35.
Leverstein-van Hall, M.A., A.T.A. Box, H.E.M. Blok, A. Paauw, A.C. Fluit, and J. Verhoef. 2001. Evidence of extensive interspecies transfer of integron-mediated antimicrobial resistance genes among multidrug-resistant Enterobacteriaceae in a clinical setting. J. Infect. Dis. 186, 49–56.
Lévesque, C., L. Piche, C. Larose, and P.H. Roy. 1995. PCR mapping of integrons reveals several novel combinations of resistance genes. Antimicrob. Agents Chemother. 39, 185–291.
Macrina, F.L., D.J. Kopecko, K.R. Jones, D.J. Ayers, and S.M. McCowen. 1978. A multiple plasmid containing Escherichia coli strain: convention source of size reference plasmid molecules. Plasmid 1, 417–420.
Mukherjee, S. and R. Chakraborty. 2006. Incidence of class 1 integrons in multiple antibiotic-resistant Gram-negative copiotrophic bacteria from the River Torsa in India. Res. Microbiol. 157, 220–226.
Mukherjee, S. and R. Chakraborty. 2007. Conjugation potential and class 1 integron carriage of resident plasmids in river water capiotrophs. Acta Microbiol. Immunol. Hung. 54, 379–397.
Nordmann, P. and L. Poirel. 2005. Emergence of plasmid-mediated resistance to quinolones in Enterobacteriaceae. J. Antimicrob. Chemother. 56, 463–469.
Ozgumus, O.B., E. Celik-Sevim, S. Alpay-Karaoglu, C. Sandalli, and A. Sevim. 2007. Molecular characterization of antibiotic resistant Escherichia coli strains isolated from tap and spring waters in a coastal region in Turkey. J. Microbiol. 45, 379–387.
Pathak, S.P. and K. Gopak. 2008. Prevalence of bacterial contamination with antibiotic-resistant and enterotoxigenic fecal coliforms in treated drinking water. J. Toxicol. Environ. Health A 71, 427–433.
Petersen, A., L. Guardabassi, A. Dalsgaard, and J.E. Olsen. 2000. Class 1 integrons containing a dhfrI trimethoprim resistance gene cassette in aquatic Acinetobacter spp. FEMS Microbiol. Lett. 182, 73–76.
Phongpaichit, S., K. Wuttananupan, and N. Samasanti. 2008. Class 1 integrons and multidrug resistance among Escherichia coli isolates from human stools. Southeast Asian J. Trop. Med. Public Health 39, 279–287.
Recchia, G.D. and R.M. Hall. 1995. Gene cassettes: a new class of mobile element. Microbiology 141, 3015–3027.
Rice, L.B., S.H. Willey, G.A. Papanicolaou, A.A. Medeiros, G.M. Eliopoulos, R.C. Moellering, and G.A. Jacoby. 1990. Outbreak of ceftazidime resistance caused by extended-spectrum β-lactamases at a Massachusetts chronic care facility. Antimicrob. Agents Chemother. 34, 2193–2199.
Roe, M.T., E. Vega, and S.D. Pillai. 2003. Antimicrobial resistance markers of class 1 and class 2 integron bearing Escherichia coli from irrigation water and sediments. Emerg. Infect. Dis. 9, 822–826.
Rohlf, F.J. 1990. NTSYS-pc numerical taxonomy and multivariate analysis system, p. 1–145. Version 1.8, Applied Biostatistics, New York, N.Y., USA.
Rowe-Magnus, D.A. and D. Mazel. 2002. The role of integrons in antibiotic resistance gene capture. Int. J. Med. Microbiol. 292, 115–125.
Roy, P.H. 1999. Horizontal transfer of genes in bacteria. Microbiol. Today 26, 168–170.
Seurinck, S., W. Verstraete, and S.D. Siciliano. 2003. Use of 16S–23S rRNA intergenic spacer region PCR and repetitive extragenic palindromic PCR analyses of Escherichia coli isolates to identify nonpoint fecal sources. Appl. Environ. Microbiol. 69, 4942–4950.
Shehabi, A.A., J.B. Odeh, and M. Fayyad. 2006. Characterization of antimicrobial resistance and class 1 integron found in Escherichia coli isolates from human stools and drinking water sources in Jordan. J. Chemother. 18, 468–472.
Sneath, P.N.A. and R.R. Sokal. 1973. Numerical taxonomy. W.H. Freeman and Company, San Francisco, USA.
Solberg, O.D., R.M. Ajiboye, and L.W. Riley. 2006. Origin of Class 1 and 2 integrons and gene cassettes in a population-based sample of uropathogenic Escherichia coli. J. Clin. Microbiol. 44, 1347–1351.
Sunde, M. 2005. Prevalence and characterization of class 1 and class 2 integrons in Escherichia coli isolated from meat and meat products of Norwegian origin. J. Antimicrob. Chemother. 56, 1019–1024.
Toroglu, S., S. Dincer, and H. Korkmaz. 2005. Antibiotic resistance in Gram-negative bacteria isolated from Aksu River in (Kahramanmaras) Turkey. Ann. Microbiol. 55, 229–233.
Van Essen-Zandbergen, A., H. Smith, K. Veldman, and D. Mevius. 2007. Occurrence and characteristics of class 1, 2 and 3 integrons in Escherichia coli, Salmonella and Campylobacter spp. in the Netherlands. J. Antimicrob. Chemother. 59, 746–750.
Versalovic, J., M. Schneider, F.J. de Bruijn, and J.R. Lupski. 1994. Genomic fingerprinting of bacteria with repetitive sequence-based polymerase chain reaction. Methods Cell. Biol. 5, 25–40.
Watkinson, A.J., G.R. Micalizzi, J.R. Bates, and S.D. Costanzo. 2007. Novel method for rapid assessment of antibiotic resistance in Escherichia coli isolates from environmental waters by use modified chromogenic agar. Appl. Environ. Microbiol. 73, 2224–2229.
White, P.A., C.J. McIver, and W.D. Rawlinson. 2001. Integrons and gene cassettes in the Enterobacteriaceae. Antimicrob. Agents Chemother. 45, 2658–6261.
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This study was presented in part at the 2nd World Conference on Magic Bullets, held October 3–5, 2008 in Nurnberg, Germany.
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Ozgumus, O.B., Sandalli, C., Sevim, A. et al. Class 1 and class 2 integrons and plasmid-mediated antibiotic resistance in coliforms isolated from ten rivers in northern Turkey. J Microbiol. 47, 19–27 (2009). https://doi.org/10.1007/s12275-008-0206-z
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DOI: https://doi.org/10.1007/s12275-008-0206-z