References
Ayala, F.J., and Coluzzi, M. (2005). Chromosome speciation: humans, Drosophila, and mosquitoes. Proc Natl Acad Sci USA 102, 6535–6542.
Barbera, J.P.M., Clements, M., Thomas, P., Rodriguez, T., Meloy, D., Kioussis, D., and Beddington, R.S.P. (2000). The homeobox gene Hex is required in definitive endodermal tissues for normal forebrain, liver and thyroid formation. Development 127, 2433–2445.
de Vos, J.M., Augustijnen, H., Bätscher, L., and Lucek, K. (2020). Speciation through chromosomal fusion and fission in Lepidoptera. Phil Trans R Soc B 375, 20190539.
Ferrero, D.M., Lemon, J.K., Fluegge, D., Pashkovski, S. L., Korzan, W.J., Datta, S.R., Spehr, M., Fendt, M., and Liberles, S.D. (2011). Detection and avoidance of a carnivore odor by prey. Proc Natl Acad Sci USA 108, 11235–11240.
Hämälä, T., Wafula, E.K., Guiltinan, M.J., Ralph, P.E., dePamphilis, C.W., and Tiffin, P. (2021). Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree. Proc Natl Acad Sci USA 118, e2102914118.
Janišová, M., Skokanová, K., and Hlásny, T. (2018). Ecological differentiation, speciation, and rarity: how do they match in Tephroseris longifolia agg. (Asteraceae)? Ecol Evol 8, 2453–2470.
Li, A., Wang, J., Sun, K., Wang, S., Zhao, X., Wang, T., Xiong, L., Xu, W., Qiu, L., Shang, Y., et al. (2021). Two reference-quality sea snake genomes reveal their divergent evolution of adaptive traits and venom systems. Mol Biol Evol 38, 4867–4883.
Liberles, S.D., and Buck, L.B. (2006). A second class of chemosensory receptors in the olfactory epithelium. Nature 442, 645–650.
Mikkers, H., Nawijn, M., Allen, J., Brouwers, C., Verhoeven, E., Jonkers, J., and Berns, A. (2004). Mice deficient for all PIM kinases display reduced body size and impaired responses to hematopoietic growth factors. Mol Cell Biol 24, 6104–6115.
Reseland, J.E., Larsen, F., Solheim, J., Eriksen, J.A., Hanssen, L.E., and Prydz, H. (1997). A novel human chymotrypsin-like digestive enzyme. J Biol Chem 272, 8099–8104.
Sloan, J.L., and Mager, S. (1999). Cloning and functional expression of a human Na+ and Cl−-dependent neutral and cationic amino acid transporter B0+. J Biol Chem 274, 23740–23745.
Yang, L., Jiang, H., Wang, Y., Lei, Y., Chen, J., Sun, N., Lv, W., Wang, C., Near, T.J., and He, S. (2019). Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes. Commun Biol 2, 235.
Acknowledgement
This work was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB31000000), the National Natural Science Foundation of China (32170480, 31972866), and Youth Innovation Promotion Association, Chinese Academy of Sciences (http://www.yicas.cn). This research was supported by the Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
The author(s) declare that they have no conflict of interest. All the sequencing data were deposited at the NCBI (Mylopharyngodon piceus: PRJNA934151; Ctenopharyngodon Idella: PRJNA931646; Aristichthys nobilis: PRJNA891078; Hypophthalmichthys molitrix: PRJNA891019. The assembled genomes and analysis codes are available in Dryad (https://doi.org/10.5061/dryad.4qrfj6qgm) and Zenodo (https://doi.org/10.5281/zenodo.8411706).
Supporting information
Rights and permissions
About this article
Cite this article
Wang, C., Yang, L., Lu, Y. et al. Genomic features for adaptation and evolutionary dynamics of four major Asian domestic carps. Sci. China Life Sci. (2024). https://doi.org/10.1007/s11427-023-2479-2
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s11427-023-2479-2