Abstract
Alternative berry crops belonging with the Rosaceae family currently have a great importance in the US and Canadian agribusiness, in this sense, the Mexican serviceberry (Malacomeles denticulata) is a fruit shrub mainly distributed in Mexico that has potential uses like horticultural crop; however, little information about its variability has been reported. That is why this research aims to determine the variability of M. denticulata by SSR markers. The apple SSR markers had a good transferability to Malacomeles (74 %); all transferable SSR are polymorphic and sixteen of them had high values of polymorphic information content, Nei’s expected heterozygosity (He), and Shannon’s information index (I), even the apple SSR loci were not previously proved in this species. Besides it was found high variability in the germplasm of central Mexico mainly within populations (72 %), where three different genetic pool were detected suggesting that a breeding program could be based in individual selection. That is why it is necessary select outstanding individual into population before to make hybridizations among these selected parents.
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References
De Franceschi P, Pierantoni L, Dondini L, Grandi M, Sansavini S, Sanzol J (2011) Evaluation of candidate F-box genes for the pollen S of gametophytic self-incompatibility in the Pyrinae (Rosaceae) on the basis of their phylogenomic context. Tree Gen Genom 7:663–683
De Franceschi P, Dondini L, Sanzol J, Sansavini S (2012) Structural and functional conservation of S-specificities among Pyrinae species. Acta Hort 967:95–104
Dondini L, De Franceschi P, Sansavini S (2012) Gametophytic incompatibility in pome and stone fruits: genes controlling S-locus. Acta Hort 967:67–76
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
Dynamics Nonlinear (2006) TotalLab TL 120 DM Manual. Nonlinear Dynamics LTD, Newcastle 243 p
Falconer DS, Mackay TFC (2001) Introducción a la Genética Cuantitativa. Editorial ACRIBIA, Zaragoza
Goldway M, Stern R, Zisovich A, Raz A, Sapir G, Schnieder D, Nyska R (2012) The self-incompatibility fertilization system in Rosaceae: agricultural and genetic aspects. Acta Hort 967:77–82
Hansche PE (1988) Respuesta a la Selección. In: Moore JN, Janick J (eds) Métodos Genotécnicos en Frutales. AGT Editor, Mexico, pp 207–230
Haussmann BIG, Parzies HK, Presterl T, Sušić Z, Miedaner T (2004) Plant genetic resources in crop improvement. Plant Genet Resour 2:3–21
He Q, Li XW, Liang GL, Ji K, Guo QG, Yuan WM, Zhou GZ, Chen KS, van de Weg WE, Gao ZS (2011) Genetic diversity and identity of chinese loquat cultivars/accessions (Eriobotrya japonica) using apple SSR markers. Plant Mol Biol Rep 29:197–208
Hernández-Martínez MÁ, Núñez-Colín CA, Guzmán-Maldonado SH, Espinosa-Trujillo E, Herrera-Hernández MG (2011) Variabilidad morfológica mediante caracteres de semilla de poblaciones de Amelanchier denticulata (Kunth) Koch, originarias de Guanajuato. México Rev Chapingo Ser Hort 17:161–172
Jamnadass R, Lowe A, Dawson IK (2009) Molecular markers and the management of tropical trees: the case of indigenous fruits. Trop Plant Biol 2:1–12
Li QY, Guo W, Liao WB, Macklin JA, Li JH (2012) Generic limits of Pyrinae: insights from nuclear ribosomal DNA sequences. Bot Stud 53:151–164
Liebhard R, Gianfranceschi L, Koller B, Ryder CD, Tarchini R, Van De Weg E, Gessler C (2002) Development and characterisation of 140 new microsatellites in apple (Malus × domestica Borkh). Mol Breed 10:217–241
Lo EYY, Donoghue MJ (2012) Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae). Mol Phylogenet Evol 63:230–243
Mazza G, Davidson CG (1993) Saskatoon berry: A fruit crop for the prairies. In: Janick J, Simon JE (eds) New Crops. Wiley, New York, pp 516–519
Núñez-Colín CA (2009) The tejocote (Crataegus species): a Mexican plant genetic resource that is wasted. A review. Acta Hort 806:339–346
Núñez-Colín CA (2010) Distribución y caracterización eco-climática del membrillo cimarrón (Amelanchier denticulata (Kunth) Koch) en México. Rev Chapingo Ser Hort 16:195–206
Núñez-Colín CA, Hernández-Martínez MÁ (2011) The Mexican serviceberry (Amelanchier denticulata): a new potential berry fruit crop from semi-arid areas. Acta Hort 918:917–924
Núñez-Colín CA, Hernández-Martínez MÁ, Escobedo-López D, Ortega-Rodríguez C (2012) Priority areas to collect germplasm of Malacomeles (Rosaceae) in Mexico based on diversity and species richness indices. Plant Genet Resour 10:128–133
Nybom H, Weising K (2010) DNA-based identification of clonally propagated cultivars. Plant Breeding Rev 34:221–295
Page RDM (2001) TreeView version 1.6.6. Available in the website: http://taxonomy.zoology.gla.ac.uk/rod/rod.htm, Glasgow
Park SDE (2008) The Excel Mirosatellite Toolkit version 3.1.1, Available in the website: http://animalgenomics.ucd.ie/sdepark/ms-toolkit/, Dublin
Park YJ, Lee JK, Kim NS (2009) Simple sequence repeat polymorphisms (SSRPs) for evaluation of molecular diversity and germplasm classification of minor crops. Molecules 14:4546–4569
Payne JA, Krewer GW (1990) Mayhaw: A new fruit crop for the south. In: Janick J, Simon JE (eds) Advances in new crops. Timber Press, Portland, pp 317–321
Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in excel. Population genetic software for teaching and research—an update. Bioinformatics 28:2537–2539
Sehic J, Garkava-Gustavsson L, Fernández-Fernández F, Nybom H (2012) Genetic diversity in a collection of European pear (Pyrus communis) cultivars determined with SSR markers chosen by ECPGR. Sci Hort 145:39–45
Serrano-Jamaica LM (2012) Determinación de la diversidad genética en poblaciones de Malacomeles denticulata (Kunth) Jones en el centro de México mediante SSR-M13 marcado. B. Sc. Thesis, Instituto Tecnológico de Celaya
Stushnoff C (1991) Amelanchier species. Acta Hort 290:549–566
Turner BL (2011) Recension of the genus Malacomeles (Rosaceae). Phytologia 93:99–106
Vanwynsberghe L, Decq L, Keulemans J (2009) Transferability of Malus × domestica microsatellite markers to other species and genera of the Maloideae subfamily. Acta Hort 839:567–574
Wright S (1978) Evolution and the genetics of populations, vol 4. University of Chicago Press, Chicago, Variability within and among natural populations
Yeh FC, Yang R, Boyle T (1999) POPGENE version 1.31, Microsoft Window-based Freeware for Population Genetic Analysis, Quick User Guide. University of Alberta and Centre for International Forestry Research, Edmonton
Yu JW, Dixit A, Ma KH, Chung JW, Park YJ (2009) A study on relative abundance, composition and length variation of microsatellites in 18 underutilized crop species. Genet Resour Crop Evol 56:237–246
Acknowledgments
This study was supported by Mexico’s National Council for Science and Technology (CONACYT) by mean the project CB2009/134193: “Estudios básicos sobre diversidad y potencial agroalimentario del membrillo cimarrón (Amelanchier denticulata (Kunth) Koch) en el centro de México”.
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Torres-Hernández, S., Pérez-Rodríguez, F., Serrano-Jamaica, L.M. et al. Genetic variability in Malacomeles denticulata (Rosaceae) from central Mexico revealed with SSR markers. Genet Resour Crop Evol 60, 2191–2200 (2013). https://doi.org/10.1007/s10722-013-0041-x
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DOI: https://doi.org/10.1007/s10722-013-0041-x