Abstract
Recently, improve the protease activity in the presence of organic solvents has been appreciated for the researchers. In the current study, we have tried to increase the organic solvent stability of salinovibrio proteolyticus protease (SVP) by site-directed mutagenesis. Five variants were constructed to substitute the surface charged, and polar amino acid residues in SVP with hydrophobic ones (T21V, Y23V, K30P, D25P and N248G) to examine the outcome of surface hydrophobicity on the enzyme efficiency in the presence of organic solvent. The catalytic efficiency of Y23V and N248G mutants not only increased about 1.8 and 2.6 folds in DMF and methanol but also increased it about 3.8 and 5.0 folds in isopropanol and n-propanol, compared to SVP. ∆∆G‡ values of Y23V and N248G variants, increased about 6.5 and 9.5 kcal mol−1 in DMF and methanol, and it improved about 13.6 and 16.6 kcal mol−1 in isopropanol and n-propanol, respectively. These results show that irreversible thermoinactivation rate of protease has a straight relationship with hydrophobicity of organic solvents.
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Simon LM, Kotorman M, Szabo A, Nemcsok J, Laczko I (2007) P Biocheim 42:909–912
Schmid A, Dordick JS, Hauer B, Kiener A, Wubboltz M, Witholt B (2001) Nature 409:258–268
Klibanov AM (2003) Curr Opin Biotechnol 14:427–431
Koeller KM, Wong CH (2001) Nature 409:232–240
Dordick JS (1992) Biotechnol Prog 8:259–267
Wong CH, Chen ST, Hennen WJ, Bibbs JA, Wang YF, Liu JLC, Pantoliano MW, Whitlow M, Bryan PN (1990) J Am Chem Soc 112:945–953
Chen KQ, Robinson AC, Van Dam ME, Martinez P, Economou C, Arnold FH (1991) Biotechnol Prog 7:125–129
Economou C, Chen K, Arnold FH (1992) Biotechnol Bioeng 39:658–662
Ogino H, Uchiho T, Doukyu N, Yasuda M, Ishimi K, Ishikawa H (2007) Biochem Biophys Res Commun 358:1028–1033
Chen KQ, Arnold FH (1991) Biotechnology 9:1073–1077
Chen K, Arnold FH (1993) Proc Natl Acad Sci 90:5618–5622
Moore JC, Arnold FH (1996) Nat Biotechnol 14:458–467
Pantoliano MW, Whitlow M, Wood JF, Dodd SW, Hardman KD, Rollence ML, Bryan PN (1989) Biochemistry 28:7205–7213
Song JK, Rhee JS (2001) Biochim Biophys Acta 1547:370–378
Velde FVD, Rantwijk FV, Sheldon RA (2001) Trends Biotechnol 19:73–80
You L, Arnold FH (1996) Protein Eng 9:77–83
Park HJ, Joo JC, Park K, Yoo YJ (2012) Biotechnol. Bioprocess Eng 17:722–728
Stepankova V, Bidmanova S, Koudelakova T, Prokop Z, Chaloupkova R, Damborsky J (2013) ACS Catal 3:2823–2836
Rasekh B, Khajeh Kh, Ranjbar B, Mollania N, Almasinia B, Tirandaz H (2014) Eng Life Sci 14:442–448
Ashraf NM, Krishnagopal A, Hussain A, Kastner D, Mahmoud Mohammed SA, Mok YK, Swaminathan K, Zeeshan N (2019) Int J Biol Macromol 126:229–237
Beaumont A, Beynon RF (1998) Academic press, Landon
Karbalaei-Heidari HR, Ziaee AA, Schaller J, Amoozegar MA (2007) Enz Microb Technol 40:266–272
Karbalaei-Heidari HR, Ziaee AA, Amoozegar MA, Cheburkin Y, Budisa N (2008) Gene 408:196–203
Amoozegar MA, Schumann P, Hajighasemi M, Fatemi AZ, Karbalaei-Heidari HR (2008) Int J Syst Evol Microbiol 58:1159–1163
Horikoshi K (1999) Microbiol Mol Biol Rev 63:735–750
Badoei-Dalfard A, Khajeh Kh, Asghari SM, Ranjbar B, Karbalaei-Heidari HR (2010) J Biochem 148:231–238
Thayer MM, Flaherty KM, McKay DB (1991) J Biol Chem 266:2864–2871
Colmax M, Jansonius JN, Matthews BW (1972) J Mol Biol 70:701–724
Pauptit RA, Karlsson R, Picot D, Jenkins JA, Nikolaus-Reimer AS, Jansonius JN (1988) J Mol Biol 199:525–537
Badoei-Dalfard A, Goodarzi N, Dabirmanesh B, Khajeh K (2018) Int J Biol Macromol 120:440–448
Fisher CL, Pei GK (1997) Biotechniques 23:570–574
Tatsumi C, Hashida Y, Yasukawa K, Inouye K (2007) J Biochem 141:835–842
Yasukawa K, Inouye K (2007) Biochim Biophys Acta 1774:1281–1288
Inouye K, Minoda M, Takita T, Sakurama H, Hashida Y, Kusano M, Yasukawa K (2006) Protein Expr Purif 46:248–255
Inouye K (1992) J Biochem 112:335–340
Inouye K, Lee SB, Tonomura B (1996) Biochem J 315:133–138
Wilkinson AJ, Fersht AR, Blow DM, Winter G (1983) Biochemistry 22:3581–3586
Pazhang M, Khajeh Kh, Ranjbar B, Hosseinkhani S (2006) J Biotechnol 127:45–53
Ogino H, Uchiho T, Yokoo J, Kobayashi R, Ichise R, Ishikawa H (2001) Appl Environ Microbiol 67:942–947
Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG et al (2007) J Mol Biol 366:1209–1221
Kawata T, Ogino H (2010) Biochem Biophys Res Commun 400:348–388
Monsef-Shokri M, Ahmadian SH, Akbari N, Khajeh K (2013) Mol Biotechnol 56(4):360–368
Yang S, Zhou L, Tang H, Pan J, Wu X, Huang H et al (2002) J Mol Catal B Enzym 18:258–290
Imanaka T, Shibazaki M, Takagi M (1986) Nature 324:695–697
Fontana A (1988) Biophys Chem 29:181–193
Van den Burg B, Dijkstra BW, Vriend G, Van der Vinne B, Venema G, Eijsink VGH (1994) Eur J Biochem 220:981–985
Vriend G, Berendsen HJ, van den Burg B, Venema G, Eijsink VG (1998) J Biol Chem 273:35074–35077
Zhao H, Arnold FH (1999) Protein Eng 12:47–53
Matthews BW, Nicholson H, Becktel WJ (1987) Proc Natl Acad Sci 84:6663–6667
Hardy F, Vriend G, Veltman OR, Van der Vinne B, Venema G, Eijsink VGH (1993) FEBS Lett 317:89–92
Eijsink VGH, Dijkstra BW, Vriend G, Van der Zee JR, Veltman OR, Van der Vinne B, Van den Burg B, Kempe S, Venema G (1992) Protein Eng 5:421–426
Eijsink VGH, Vriend G, Van der Vinne B, Hazes B, Van den Burg B, Venema G (1992) Proteins 14:224–236
Vriend G, Eijsink VGH (1993) J Comput Aided Mol Des 7:367–396
Mansfeld J, Ulbrich-Hofmann R (2007) Biotechnol Bioeng 97:672–679
Tsuzki W, Ue A, Nagao A (2003) Biosci Biotechnol Biochem 6:1660–1666
Serdakowski A, Dordick JS (2008) Trends Biotechnol 26:48–54
Zaks A, Klibanov AM (1988) J Biol Chem 263:8017–8021
Rupley JA, Careri G (1991) Adv Protein Chem 41:137–172
Dahlquist FW, Long JW, Bigbee WL (1976) Biochemistry 15:1103–1111
Van den Burg B, Eijsink VGH, Stulp BK, Venema G (1990) Biochem J 272:93–97
Braxton S, Wells JA (1992) Biochemistry 31:7796–7801
Hardy F, Vriend G, van der Vinne B, Frigerio F, Grandi G, Venema G, Eijsink VGH (1994) Protein Eng 7:425–430
Nosoh Y, Sekiguchi T (1988) Biocatalysis 1:257–273
Arnold FH (1990) Trends Biotechnol 8:244–249
Martinez P, Arnold FH (1991) J Am Chem Soc 113:6336–6337
Chen S, Engel PC (2007) Enz Microb Technol 40:1407–1411
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Badoei-dalfard, A., Khajeh, K. & Karami, Z. Protein Engineering of a Metalloprotease in Order to Improve Organic Solvents Stability and Activity. Catal Lett 150, 1219–1229 (2020). https://doi.org/10.1007/s10562-019-03044-7
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DOI: https://doi.org/10.1007/s10562-019-03044-7