Skip to main content

Advertisement

Log in

Does inbreeding affect N-glycosylation of human plasma proteins?

  • Original Paper
  • Published:
Molecular Genetics and Genomics Aims and scope Submit manuscript

Abstract

Inbreeding depression and heterosis are the two ends of phenotypic changes defined by the genome-wide homozygosity. The aim of this study was to investigate the association of genetic marker-based homozygosity estimates with 46 N-glycan features measured in human plasma. The study was based on a total of 2,341 subjects, originating from three isolated island communities in Croatia (Vis and Korcula islands) and Scotland (Orkney Islands). Inbreeding estimates were associated with an increase in tetrantennary and tetrasialylated glycans, and a decrease in digalactosylated glycans (P < 0.001). The strength of this association was proportional to the mean cohort-based inbreeding coefficient. Increase in tetraantennary glycans is known to be associated with various tumours and their association with inbreeding might be one of the mechanisms underlying the increased prevalence of tumours reported in some human isolated populations. Further studies are thus merited in order to confirm the association of inbreeding with changes in glycan profiles in other plant and animal populations, thus attempting to establish if glycosylation could indeed be involved in mediation of some phenotypic changes described in inbred and outbred organisms.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Acevedo-Whitehouse K, Vicente J, Gortazar C, Höfle U, Fernández-de-Mera IG, Amos W (2005) Genetic resistance to bovine tuberculosis in the Iberian wild boar. Mol Ecol 14:3209–3217

    Article  PubMed  CAS  Google Scholar 

  • Arnold JN, Saldova R, Hamid UM, Rudd PM (2008) Evaluation of the serum N-linked glycome for the diagnosis of cancer and chronic inflammation. Proteomics 8:3284–3293

    Article  PubMed  CAS  Google Scholar 

  • Aulchenko YS, Ripke S, Isaacs A, van Duijn CM (2007) GenABEL: an R library for genome-wide association analysis. Bioinformatics 23:1294–1296

    Article  PubMed  CAS  Google Scholar 

  • Bellenguez C, Ober C, Bourgain C (2009) Linkage analysis with dense SNP maps in isolated populations. Hum Hered 68:87–97

    Article  PubMed  Google Scholar 

  • Birchler JA, Auger DL, Riddle NC (2003) In search of the molecular basis of heterosis. Plant Cell 15:2236–2239

    Article  PubMed  CAS  Google Scholar 

  • Boland M, Rudd P (2008) Disease related glycosylation changes and biomarker discovery: challenges and possibilities in an emerging field. Dis Markers 25:189–192

    PubMed  Google Scholar 

  • Bos PD, Zhang XH, Nadal C, Shu W, Gomis RR, Nguyen DX, Minn AJ, van de Vijver MJ, Gerald WL, Foekens JA, Massagué J (2009) Genes that mediate breast cancer metastasis to the brain. Nature 459:1005–1009

    Article  PubMed  CAS  Google Scholar 

  • Brockhausen I, Hull E, Hindsgaul O, Schachter H, Shah RN, Michnick SW, Carver JP (1989) Control of glycoprotein synthesis. Detection and characterization of a novel branching enzyme from hen oviduct, UDP-N-acetylglucosamine:GlcNAc beta 1-6 (GlcNAc beta 1-2)Man alpha-R (GlcNAc to Man) beta-4-N-acetylglucosaminyltransferase VI. J Biol Chem 264:11211–11221

    PubMed  CAS  Google Scholar 

  • Campbell H, Carothers AD, Rudan I, Hayward C, Biloglav Z, Barac L, Pericic M, Janicijevic B, Smolej-Narancic N, Polasek O, Kolcic I, Weber JL, Hastie ND, Rudan P, Wright AF (2007) Effects of genome-wide heterozygosity on a range of biomedically relevant human quantitative traits. Hum Mol Genet 16:233–241

    Article  PubMed  CAS  Google Scholar 

  • Coltman DW, Slate J (2003) Microsatellite measures of inbreeding: a meta-analysis. Evolution 57:971–983

    PubMed  CAS  Google Scholar 

  • Coltman DW, Bowen WD, Wright JM (1998) Birth weight and neonatal survival of harbour seal pups are positively correlated with genetic variation measured by microsatellites. Proc R Soc Lond Ser B-Biol Sci 265:803–809

    Article  CAS  Google Scholar 

  • Crnokrak P, Roff DA (1999) Inbreeding depression in the wild. Heredity 83:260–270

    Article  PubMed  Google Scholar 

  • Cummings RD (2009) The repertoire of glycan determinants in the human glycome. Mol Biosyst 5:1087–1104

    Article  PubMed  CAS  Google Scholar 

  • Dall’Olio F, Chiricolo M (2001) Sialyltransferases in cancer. Glycoconj J 18:841–850

    Article  PubMed  Google Scholar 

  • Darwin C (1876) The effects of cross and self fertilization in the vegetable kingdom. John Murray, London

    Google Scholar 

  • Dennis JW, Laferte S (1989) Oncodevelopmental expression of—GlcNAc beta 1-6Man alpha 1-6Man beta 1—branched asparagine-linked oligosaccharides in murine tissues and human breast carcinomas. Cancer Res 49:945–950

    PubMed  CAS  Google Scholar 

  • Dube DH, Bertozzi CR (2005) Glycans in cancer and inflammation—potential for therapeutics and diagnostics. Nat Rev Drug Discov 4:477–488

    Article  PubMed  CAS  Google Scholar 

  • Dupuis J, Langenberg C, Prokopenko I, Saxena R, Soranzo N, Jackson AU, Wheeler E, Glazer NL, Bouatia-Naji N, Gloyn AL et al (2010) New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. Nat Genet 42:105–116

    Article  PubMed  CAS  Google Scholar 

  • Falconer DS, Mackay TFC (1996) Quantitative genetics Pearson. Prentice Hall, Harlow

    Google Scholar 

  • Guo JM, Zhang XY, Chen HL, Wang GM, Zhang YK (2001) Structural alterations of sugar chains in urine fibronectin from bladder cancer patients and its enzymatic mechanism. J Cancer Res Clin Oncol 127:512–519

    Article  PubMed  CAS  Google Scholar 

  • Hedlund M, Ng E, Varki A, Varki NM (2008) alpha 2-6-linked sialic acids on N-glycans modulate carcinoma differentiation in vivo. Cancer Res 68:388–394

    Article  PubMed  CAS  Google Scholar 

  • Jin XL, Liu HB, Zhang Y, Wang BS, Chen HL (2004) Alteration in N-acetylglucosaminyltransferase activities and glycan structure in tissue and bile glycoproteins from extrahepatic bile duct carcinoma. Glycoconj J 20:399–406

    Article  PubMed  CAS  Google Scholar 

  • Keller LF, Waller DM (2002) Inbreeding effects in wild populations. Trends Ecol Evol 17:230–241

    Article  Google Scholar 

  • Keller LF, Arcese P, Smith JNM, Hochachka WM, Stearns SC (1994) Selection against inbred song sparrows during a natural-population bottleneck. Nature 372:356–357

    Article  PubMed  CAS  Google Scholar 

  • Knezevic A, Gornik O, Polasek O, Pucic M, Redzic I, Novokmet M, Rudd PM, Wright AF, Campbell H, Rudan I, Lauc G (2010) Effects of aging, body mass index, plasma lipid profiles, and smoking on human plasma N-glycans. Glycobiology 20:959–969

    Article  PubMed  CAS  Google Scholar 

  • Knezević A, Polasek O, Gornik O, Rudan I, Campbell H, Hayward C, Wright A, Kolcic I, O’Donoghue N, Bones J, Rudd PM, Lauc G (2009) Variability, heritability and environmental determinants of human plasma N-glycome. J Proteome Res 8:694–701

    Article  PubMed  Google Scholar 

  • Köttgen A, Pattaro C, Böger CA, Fuchsberger C, Olden M, Glazer NL, Parsa A, Gao X, Yang Q, Smith AV et al (2010) New loci associated with kidney function and chronic kidney disease. Nat Genet 42:376–384

    Article  PubMed  Google Scholar 

  • Lau KS, Dennis JW (2008) N-glycans in cancer progression. Glycobiology 18:750–760

    Article  PubMed  CAS  Google Scholar 

  • Lee RT, Lauc G, Lee YC (2005) Glycoproteomics: protein modifications for versatile functions. EMBO Rep 6:1018–1022

    Article  PubMed  CAS  Google Scholar 

  • Leutenegger AL, Prum B, Génin E, Verny C, Lemainque A, Clerget-Darpoux F, Thompson EA (2003) Estimation of the inbreeding coefficient through use of genomic data. Am J Hum Genet 73:516–523

    Article  PubMed  CAS  Google Scholar 

  • McQuillan R, Leutenegger AL, Abdel-Rahman R, Franklin CS, Pericic M, Barac-Lauc L, Smolej-Narancic N, Janicijevic B, Polasek O, Tenesa A, Macleod AK, Farrington SM, Rudan P, Hayward C, Vitart V, Rudan I, Wild SH, Dunlop MG, Wright AF, Campbell H, Wilson JF (2008) Runs of homozygosity in European populations. Am J Hum Genet 83:359–372

    Article  PubMed  CAS  Google Scholar 

  • Polasek O, Hayward C, Bellenguez C, Vitart V, Kolcić I, McQuillan R, Saftić V, Gyllensten U, Wilson JF, Rudan I, Wright AF, Campbell H, Leutenegger AL (2010) Comparative assessment of methods for estimating individual genome-wide homozygosity-by-descent from human genomic data. BMC Genomics 11:139

    Article  PubMed  Google Scholar 

  • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC (2007) PLINK: a toolset for whole-genome association and population-based linkage analysis. Am J Hum Genet 81:559–575

    Article  PubMed  CAS  Google Scholar 

  • Reid JM, Arcese P, Keller LF (2003) Inbreeding depresses immune response in song sparrows (Melospiza melodia): direct and inter-generational effects. Proc R Soc Lond Ser B-Biol Sci 270:2151–2157

    Article  Google Scholar 

  • Reid JM, Arcese P, Keller LF, Elliott KH, Sampson L, Hasselquist D (2007) Inbreeding effects on immune response in free-living song sparrows (Melospiza melodia). Proc R Soc B-Biol Sci 274:697–706

    Article  Google Scholar 

  • Repapi E, Sayers I, Wain LV, Burton PR, Johnson T, Obeidat M, Zhao JH, Ramasamy A, Zhai G, Vitart V et al (2010) Genome-wide association study identifies five loci associated with lung function. Nat Genet 42:36–44

    Article  PubMed  CAS  Google Scholar 

  • Rudan I (1999) Inbreeding and cancer incidence in human isolates. Hum Biol 71:173–187

    PubMed  CAS  Google Scholar 

  • Rudan I (2001) Ancestral kinship and cancer in Lastovo island. Hum Biol 73:871–884

    Article  PubMed  CAS  Google Scholar 

  • Rudan I, Carothers AD, Polasek O, Hayward C, Vitart V, Biloglav Z, Kolcic I, Zgaga L, Ivankovic D, Vorko-Jovic A, Wilson JF, Weber JL, Hastie N, Wright A, Campbell H (2008) Quantifying the increase in average human heterozygosity due to urbanization. Eur J Hum Genet 16:1097–1102

    Article  PubMed  CAS  Google Scholar 

  • Vitart V, Biloglav Z, Hayward C, Janicijevic B, Smolej-Narancic N, Barac L, Pericic M, Klaric IM, Skaric-Juric T, Barbalic M, Polasek O, Kolcic I, Carothers A, Rudan P, Hastie N, Wright A, Campbell H, Rudan I (2006) 3000 years of solitude: extreme differentiation in the island isolates of Dalmatia, Croatia. Eur J Hum Genet 14:478–487

    Article  PubMed  CAS  Google Scholar 

  • Yao M, Zhou DP, Jiang SM, Wang QH, Zhou XD, Tang ZY, Gu JX (1998) Elevated activity of N-acetylglucosaminyltransferase V in human hepatocellular carcinoma. J Cancer Res Clin Oncol 124:27–30

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This study was supported through the grants from the Medical Research Council UK, the Ministry of Science, Education and Sport of the Republic of Croatia to I.R. (number 216-1080315-0302) and G.L. (number 309-0061194-2023), EUROSPAN (contract no. LSHG-CT-2006-018947) and GLYCOBIOM projects (contract no 259869) from the European Commission. We would like to acknowledge the invaluable contributions of the recruitment team (including those from the Institute of Anthropological Research in Zagreb), the administrative teams in Croatia and Edinburgh (Rosa Bisset) and the people of Vis, Korcula and Orkney.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ozren Polašek.

Additional information

Communicated by L. Andersson.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 73 kb)

Supplementary material 2 (DOC 32 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Polašek, O., Leutenegger, AL., Gornik, O. et al. Does inbreeding affect N-glycosylation of human plasma proteins?. Mol Genet Genomics 285, 427–432 (2011). https://doi.org/10.1007/s00438-011-0620-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00438-011-0620-5

Keywords

Navigation