Abstract
Tris(2-chloroethyl) phosphate (TCEP) is a haloalkyl phosphate flame retardant and plasticizer that has been recognized as a global environmental contaminant. Sphingobium sp. strain TCM1 can utilize TCEP as a phosphorus source. To identify the phosphomonoesterase involved in TCEP utilization, we identified four putative alkaline phosphatase (APase) genes, named SbphoA, SbphoD1, SbphoD2, and SbphoX-II, in the genome sequence. Following expression of these genes in Escherichia coli, APase activity was confirmed for the SbphoA and SbphoX-II gene products but was not clearly observed for the SbphoD1 and SbphoD2 gene products, owing to their accumulation in inclusion bodies. The single deletion of either SbphoA or SbphoX-II retarded the growth and reduced the APase activity of strain TCM1 cells on medium containing TCEP as the sole phosphorus source; these changes were more marked in cells with the SbphoX-II gene deletion. In contrast, the deletion of either SbphoD1 or SbphoD2 had no effect on cell growth or APase activity. The double deletion of SbphoA and SbphoX-II resulted in the complete loss of cell growth on TCEP. These results show that SbPhoA and SbPhoX-II are involved in the utilization of TCEP as a phosphorus source and that SbPhoX-II is the major phosphomonoesterase involved in TCEP utilization.
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References
Abe K, Yoshida S, Suzuki Y, Mori J, Doi Y, Takahashi S, Kera Y (2014) Haloalkylphosphorus hydrolases purified from Sphingomonas sp. strain TDK1 and Sphingobium sp. strain TCM1. Appl Environ Microbiol 80(18):5866–5873. doi:10.1128/AEM.01845-14
Antelmann H, Scharf C, Hecker M (2000) Phosphate starvation-inducible proteins of Bacillus subtilis: proteomics and transcriptional analysis. J Bacteriol 182(16):4478–4490. doi:10.1128/JB.182.16.4478-4490.2000
Bickley J, Owen RJ (1995) Preparation of bacterial genomic DNA. Methods Mol Biol 46:141–147. doi:10.1385/0-89603-297-3:141
Bihani SC, Das A, Nilgiriwala KS, Prashar V, Pirocchi M, Apte SK, Ferrer JL, Hosur MV (2011) X-ray structure reveals a new class and provides insight into evolution of alkaline phosphatases. PLoS One 6(7):e22767. doi:10.1371/journal.pone.0022767
Eder S, Shi L, Jensen K, Yamane K, Hulett FM (1996) A Bacillus subtilis secreted phosphodiesterase alkaline phosphatase is the product of a Pho regulon gene, phoD. Microbiology 142(8):2041–2047. doi:10.1099/13500872-142-8-2041
Kageyama H, Tripathi K, Rai AK, Cha-Um S, Waditee-Sirisattha R, Takabe T (2011) An alkaline phosphatase/phosphodiesterase, PhoD, induced by salt stress and secreted out of the cells of Aphanothece halophytica, a halotolerant cyanobacterium. Appl Environ Microbiol 77(15):5178–5183. doi:10.1128/AEM.00667-11
Kera Y, Abe K, Kasai D, Fukuda M, Takahashi S (2016) Draft genome sequences of Sphingobium sp. strain TCM1 and Sphingomonas sp. strain TDK1, haloalkyl phosphate flame retardant and plasticizer-degrading bacteria. Genome Announc 4(4):e00668–e00616. doi:10.1128/genomeA.00668-16
Kim EE, Wyckoff HW (1991) Reaction mechanism of alkaline phosphatase based on crystal structures: two-metal ion catalysis. J Mol Biol 218(2):449–464. doi:10.1016/0022-2836(91)90724-K
Lee DH, Choi SL, Rha E, Kim SJ, Yeom SJ, Moon JH, Lee SG (2015) A novel psychrophilic alkaline phosphatase from the metagenome of tidal flat sediments. BMC Biotechnol 15:1. doi:10.1186/s12896-015-0115-2
Lin HY, Shih CY, Liu HC, Chang J, Chen YL, Chen YR, Lin HT, Chang YY, Hsu CH, Lin HJ (2013) Identification and characterization of an extracellular alkaline phosphatase in the marine diatom Phaeodactylum tricornutum. Mar Biotechnol 15(4):425–436. doi:10.1007/s10126-013-9494-3
Manoil C (1991) Analysis of membrane-protein topology using alkaline-phosphatase and β-galactosidase gene fusions. Methods Cell Biol 34:61–75. doi:10.1016/S0091-679X(08)61676-3
Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Monds RD, Newell PD, Schwartzman JA, O’Toole GA (2006) Conservation of the Pho regulon in Pseudomonas fluorescens Pf0-1. Appl Environ Microbiol 72(3):1910–1924. doi:10.1128/AEM.72.3.1910-1924.2006
Nilgiriwala KS, Alahari A, Rao AS, Apte SK (2008) Cloning and overexpression of alkaline phosphatase PhoK from Sphingomonas sp. strain BSAR-1 for bioprecipitation of uranium from alkaline solutions. Appl Environ Microbiol 74(17):5516–5523. doi:10.1128/AEM.00107-08
O’Brien PJ, Herschlag D (2002) Alkaline phosphatase revisited: hydrolysis of alkyl phosphates. Biochemistry 41(9):3207–3225. doi:10.1021/bi012166y
Pop O, Martin U, Abel C, Muller JP (2002) The twin-arginine signal peptide of PhoD and the TatAd/Cd proteins of Bacillus subtilis form an autonomous Tat translocation system. J Biol Chem 277(5):3268–3273. doi:10.1074/jbc.M110829200
Program NT (1985) NTP toxicology and carcinogenesis studies of 2-chloroethanol (ethylene chlorohydrin) (CAS No. 107-07-3) in F344/N rats and Swiss CD-1 mice (dermal studies). Natl Toxicol Program Tech Rep Ser 275:1–194
Pugsley AP (1993) The complete general secretory pathway in gram-negative bacteria. Microbiol Rev 57(1):50–108
Ragot SA, Kertesz MA, Bunemann EK (2015) phoD alkaline phosphatase gene diversity in soil. Appl Environ Microbiol 81(20):7281–7289. doi:10.1128/AEM.01823-15
Rodriguez F, Lillington J, Johnson S, Timmel CR, Lea SM, Berks BC (2014) Crystal structure of the Bacillus subtilis phosphodiesterase PhoD reveals an iron and calcium-containing active site. J Biol Chem 289(45):30889–30899. doi:10.1074/jbc.M114.604892
Rangu SS, Basu B, Muralidharan B, Tripathi SC, Apte SK (2016) Involvement of phosphoesterases in tributyl phosphate degradation in Sphingobium sp. strain RSMS. Appl Microbiol Biotechnol 100(1):461–468. doi:10.1007/s00253-015-6979-1
Rangu SS, Muralidharan B, Tripathi SC, Apte SK (2014) Tributyl phosphate biodegradation to butanol and phosphate and utilization by a novel bacterial isolate, Sphingobium sp. strain RSMS. Appl Microbiol Biotechnol 98(5):2289–2296. doi:10.1007/s00253-013-5158-5
Sebastian M, Ammerman JW (2009) The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA. ISME J 3(5):563–572. doi:10.1038/ismej.2009.10
Singh BK, Walker A (2006) Microbial degradation of organophosphorus compounds. FEMS Microbiol Rev 30(3):428–471. doi:10.1111/j.1574-6976.2006.00018.x
Takahashi S, Abe K, Kera Y (2013) Microbial degradation of persistent organophosphorus flame retardants. In: Petre M (ed) Environmental biotechnology—new approaches and prospective applications. InTech, Croatia, pp 91–122. doi: 10.5772/53749
Takahashi S, Miura K, Abe K, Kera Y (2012) Complete detoxification of tris(2-chloroethyl) phosphate by two bacterial strains: Sphingobium sp. strain TCM1 and Xanthobacter autotrophicus strain GJ10. J Biosci Bioeng 114(3):306–311. doi:10.1016/j.jbiosc.2012.04.010
Takahashi S, Satake I, Konuma I, Kawashima K, Kawasaki M, Mori S, Morino J, Mori J, Xu H, Abe K, Yamada RH, Kera Y (2010) Isolation and identification of persistent chlorinated organophosphorus flame retardant-degrading bacteria. Appl Environ Microbiol 76(15):5292–5296. doi:10.1128/AEM.00506-10
Wu JR, Shien JH, Shieh HK, Hu CC, Gong SR, Chen LY, Chang PC (2007) Cloning of the gene and characterization of the enzymatic properties of the monomeric alkaline phosphatase (PhoX) from Pasteurella multocida strain X-73. FEMS Microbiol Lett 267(1):113–120. doi:10.1111/j.1574-6968.2006.00542.x
Yong SC, Roversi P, Lillington J, Rodriguez F, Krehenbrink M, Zeldin OB, Garman EF, Lea SM, Berks BC (2014) A complex iron-calcium cofactor catalyzing phosphotransfer chemistry. Science 345(6201):1170–1173. doi:10.1126/science.1254237
Zaheer R, Morton R, Proudfoot M, Yakunin A, Finan TM (2009) Genetic and biochemical properties of an alkaline phosphatase PhoX family protein found in many bacteria. Environ Microbiol 11(6):1572–1587. doi:10.1111/j.1462-2920.2009.01885.x
Acknowledgement
This work was supported in part by a Grant-in-Aid for Scientific Research (B) (24310055, to Y.K.) from the Ministry of Education, Culture, Sports, Science, and Technology (Japan).
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Takahashi, S., Katanuma, H., Abe, K. et al. Identification of alkaline phosphatase genes for utilizing a flame retardant, tris(2-chloroethyl) phosphate, in Sphingobium sp. strain TCM1. Appl Microbiol Biotechnol 101, 2153–2162 (2017). https://doi.org/10.1007/s00253-016-7991-9
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DOI: https://doi.org/10.1007/s00253-016-7991-9