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DNA microarrays for visual detection of human pathogenic microorganisms based on tyramine signal amplification coupled with gold label silver stain

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Abstract

The utility of DNA microarrays is severely limited by their restricted sensitivity. Tyramine signal amplification (TSA) coupled with gold label silver stain (GLSS) was introduced in DNA microarrays for visual detection of human pathogenic microorganisms. First, a TSA system was introduced to the microarrays after the microarrays were prepared and hybridized with biotinylated targets. This procedure leads to large amounts of biotin-conjugated tyramine depositing at the site of enzyme reaction under HRP catalysis. Second, streptavidin–nanogold was introduced and accumulated by specific binding of biotin and streptavidin. Finally, silver staining was performed. The images of the spots were scanned with a visible light scanner and quantified with ArrayVision 7.0 software. Detection conditions were systematically optimized. Then the sensitivity among TSA coupled with GLSS, GLSS, and TSA coupled with Cy3 was compared. The optimized conditions were: streptavidin–HRP (1 mg mL−1) dilution 1:1500, biotin–tyramine dilution 1:200 (+0.5% H2O2), streptavidin–nanogold dilution 1:100 (all diluted in 1 × PBS + 1% BSA) and silver stain time of 10 min. The sensitivity of TSA coupled with GLSS was 100-fold higher than that of GLSS, and was identical with that of TSA coupled with Cy3. Meanwhile, the specificity of the microarrays were not affected. This implied that TSA coupled with GLSS was a sensitive visual detection method and would be an ideal alternative to fluorescence-based detection for DNA microarrays.

Scanned images and quantification of the microarrays in comparison of the sensitivity between TSA–GLSS and GLSS. The result showed that the sensitivity of this method was 100-fold higher than that of GLSS

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References

  1. Schena M (1996) Genome analysis with gene expression microarrays. BioEssays 18:427–431

    Article  CAS  Google Scholar 

  2. Brown PO, Botsein D (1999) Exploring the world of the genome with DNA microarrays. Nat Genet 21:33–37

    Article  CAS  Google Scholar 

  3. Heller Renu A, Schena M, Chai A, Shalone D, Bedilion T, Gilmore J, Woolley D, Davis RW (1997) Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc Natl Acad Sci USA 94:2150–2155

    Article  Google Scholar 

  4. Da-Zhi J, Si-Yuan W, Su-Hong C, Feng L, Sheng-Qi W (2006) Detection and identification of intestinal pathogens in clinical specimens using DNA microarrays. Mol Cell Probes 20:337–347

    Article  Google Scholar 

  5. Schena M, Renu A (1998) Microarrays: biotechnology’s discovery platform for functional genomics. Tib Tech 16:301–306

    CAS  Google Scholar 

  6. Bowtelld DL (1999) Options available from start to finish-for obtaining expression data by microarray. Nat Genet 21:25–32

    Article  Google Scholar 

  7. Rajeevan Mangalathu S, Dimulescu IM, Unger ER, Vernon SD (1999) Chemiluminescent analysis of gene expression on high-density filter arrays. J Histochem Cytochem 47:337–342

    Google Scholar 

  8. Stratis-Cullum DN, Griffin GD, Mobley J, Vo-Dinh T (2008) Intensified biochip system using chemiluminescence for the detection of Bacillus globigii spores. Anal Bioanal Chem 391:1655–1660

    Article  CAS  Google Scholar 

  9. Alexandre I, Hamels S et al (2001) Visual silver detection of DNA microarrays. Anal Biochem 295:1–8

    Article  CAS  Google Scholar 

  10. Ji M, Hou P, Li S, He N, Zuhong Lu (2004) Visual silver detection of methylation using DNA microarray coupled with linker-PCR. Clinica Chimica Acta 342:145–153

    Article  CAS  Google Scholar 

  11. Cao X, Wang Y-F, Zhang C-F, Gao W-J (2006) Visual DNA microarrays for simultaneous detection of Ureaplasma urealyticum and Chlamydia trachomatis coupled with multiplex asymmetrical PCR. Biosens Bioelectron 22(3):393–398

    Article  CAS  Google Scholar 

  12. Call DR, Borucki MK, Loge FJ (2003) Detection of bacterial pathogens in environmental samples using DNA microarrays. J Microbiol Methods 53:235–243

    Article  CAS  Google Scholar 

  13. Bobrow MN, Harris TD, Shaughnessy KJ, Litt GJ (1989) Catalyzed reporter deposition, a novel method of signal amplification. Application to immunoassays. J Immunol Methods 125:279–285

    Article  CAS  Google Scholar 

  14. Kerstens HMJ, Poddighe PJ, Hanselaar AGJM (1995) A novel in situ hybridization signal amplification method based on the deposition of biotinylated tyramine. J Histochem Cytochem 43:347–352

    CAS  Google Scholar 

  15. Mayer G, Bendayan M (1997) Biotinyl–tyramide: a novel approach for electron microscopic immunocytochemistry. J Histochem Cytochem 45:1449–1454

    CAS  Google Scholar 

  16. Seung-won L, Eun LS, Hyuk Ko Seong (2005) Introduction of Tyramide Signal Amplification (TSA) to pre-embedding nanogold–silver staining at the electron microscopic level. J Histochem Cytochem 53(2):249–252

    Article  Google Scholar 

  17. Jin D, Qi H, Chen S, Zeng T, Liu Q, Wang S (2008) Simultaneous detection of six human diarrheal pathogens by using DNA microarray combined with tyramide signal amplification. J Microbiol Methods 75:365–368

    Article  CAS  Google Scholar 

  18. Hopman AHN, Ramaekers FCS, Speel EJM (1998) Rapid synthesis of biotin-, digoxigenin-, trinitrophenyl-, and fluorochrome-labeled tyramides and their application for in situ hybridization using CARD amplification. J Histochem Cytochem 46(6):771–777

    CAS  Google Scholar 

  19. Zaitsu K, Ohkura Y (1980) New fluorogenic substrates for horseradish peroxidase: rapid and sensitive assays for hydrogen peroxide and the peroxidase. Anal Biochem 109:109–113

    Article  CAS  Google Scholar 

  20. Speel EJM, Anton HN (1999) Amplification methods to increase the sensitivity of in situ hybridization: play CARD(S). J Histochem Cytochem 47(3):281–288

    CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by the National High-Tech R&D Program (863 Program) (2007AA02Z400) and the National science and technology Major project (2009ZX10004–310).

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Correspondence to Sheng-Qi Wang.

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Qi, HJ., Chen, SH., Zhang, ML. et al. DNA microarrays for visual detection of human pathogenic microorganisms based on tyramine signal amplification coupled with gold label silver stain. Anal Bioanal Chem 398, 2745–2750 (2010). https://doi.org/10.1007/s00216-010-4189-3

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  • DOI: https://doi.org/10.1007/s00216-010-4189-3

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