Abstract
A combined experimental–theoretical study of quercetin adsorbed on a silica surface has been carried out in order to investigate the specific nature of their interaction. By means of an accurate hybrid functional PBE-D* approach, inclusive of dispersion interactions through the empirical D* Grimme’s term, the energetics of various configurations has been evaluated. IR spectra of the most probable ones, determined on the basis of thermodynamics considerations, have been simulated and compared to ad hoc measured spectra. A detailed classification of the peaks is proposed which sheds light onto some cloudy parts of the experimental IR spectra assignments. The most notable feature of our results is the extended and enhanced hydrogen-bonds network which is formed throughout the surface-molecule aggregate, thanks to the molecule acting as a bridge among the hydrogen bonds already present on the pristine silica surface.
Similar content being viewed by others
References
Russo N, Toscano M, Uccella N (2000) J Agric Food Chem 48:3232
Attar TE, Virji A (1999) Anticancer Drugs 10:187
Gryglewski R, Korbut R, Robak J, Swies J (1987) Biochem Pharmacol 36:317
Lamson D, Brignall M (2000) Altern Med Rev 5:196
Formica J, Regelson W (1995) Food Chem Toxicol 33:1061
Gatto M, Falcocchio S, Grippa E, Mazzanti G, Battinelli L, Nicolosi G, Lambusta D, Saso L (2002) Bioorg Med Chem 10:269
Calabro M, Tommasini S, Donato P, Raneri D, Stancanelli R, Ficarra P, Ficarra R, Costa C, Catania S, Rustichelli C, Gamberini G (2004) J Pharm Biomed Anal 35:365
Gastaldi L, Ugazio E, Sapino S, Iliade P, Miletto I, Berlier G (2012) Phys Chem Chem Phys 14:11318
Berlier G, Gastaldi L, Sapino S, Miletto I, Bottinelli E, Chirio D, Ugazio E (2013) Int J Pharm 457:177
Sapino S, Ugazio E, Gastaldi L, Miletto I, Berlier G, Zonari D, Oliaro-Bosso S (2015) Eur J Pharm Biopharm 89:116
Berlier G, Gastaldi L, Ugazio E, Miletto I, Iliade P, Sapino S (2013) J Colloid Interface Sci 393:109
Dovesi R, Orlando R, Erba A, Zicovich-Wilson CM, Civalleri B, Casassa S, Maschio L, Ferrabone M, la Pierre MD, D’Arco P, Noël Y, Causà M, Rerat M, Kirtman B (2014) Int J Quantum Chem. doi:10.1001/qua.24658
http://www.rcsb.org/pdb/home (2013)
Ugliengo P, Sodupe M, Musso F, Bush I, Orlando R, Dovesi R (2008) Adv Mater 20:4579
Delle Piane M, Corno M, Pedone A, Dovesi R, Ugliengo P (2014) J Phys Chem C 118:26737
Dovesi R, Saunders VR, Roetti C, Orlando R, Zicovich-Wilson CM, Pascale F, Civalleri B, Doll K, Harrison NM, Bush IJ, D’Arco P, Llunell M, Causà M, Noel Y (2014) CRYSTAL 2014 User’s Manual, Univerisy of Turin, Turin
Perdew MEJP, Burke K (1996) Phys Rev Lett 77:3865
Grimme S (2006) J Comput Chem 27:1787
Civalleri B, Zicovich-Wilson CM, Valenzano L, Ugliengo P (2008) CrystEngComm 10:405. doi:10.1039/B715018K
Delle Piane M (2013) Quantum mechanical simulation of biomolecules at the interface with inorganic oxides. Ph.D. thesis, Università degli Studi di Torino
Boys SF, Bernardi F (1970) Mol Phys 19:553
Davidson ER, Feller D (1986) Chem Rev 86:681
Orlando R, Delle Piane M, Bush I, Ugliengo P, Ferrabone M, Dovesi R (2012) J Comput Chem 33:2276
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JJA, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) GAUSSIAN 09, Wallingford, CT
Cornard J, Merlin J, Boudet A, Vrielynck L (1996) Biospectroscopy 3:183
Filip X, Grosu IG, Miclaus M, Filip C (2013) Cryst Eng Commun 15:4131
Domagata S, Munshi P, Ahmed M, Guillot B, Jelsch C (2011) Acta Cryst B 67:63
Jin GZ, Yamagata Y, Tomita K (1990) Cryst Struct Commun C 46:310
Borghetti G, Carini J, Honorato S, Ayala A, Moreira J, Bassani V (2012) Thermochim Acta 539:109
Dennington R, Keith T, Millam J (2009) GaussView Version 3. Semichem Inc., Shawnee Mission, KS
Rimola A, Civalleri B, Ugliengo P (2010) Phys Chem Chem Phys 12:6357
DellePiane M, Vaccari S, Corno M, Ugliengo P (2014) J Phys Chem A 118:5801
Schaftenaar G (2000) Molden: a pre- and post-processing program of molecular and electronic structures. J Comput Aided Mol Des 14:123. http://www.cmbi.ru.nl/molden/
(2000–2014) Jmol: an open-source java viewer for chemical structures in 3D. http://www.jmol.org/
Ugliengo P, Viterbo D, Chiari G (1993) Z Kristallogr 207:9
Ugliengo P (2006) MOLDRAW: a program to display and manipulate molecular and crystal structures. Torino. http://www.moldraw.unito.it
Musso F, Mignon P, Ugliengo P, Sodupe M (2012) Phys Chem Chem Phys 14:10507
Delle Piane M, Corno M, Ugliengo P (2013) J Chem Theory Comput 9:2404
Rimola A, Costa D, Sodupe M, Lambert JF, Ugliengo P (2013) Chem Rev 113:4216
Acknowledgments
The Authors are very grateful to Prof. Piero Ugliengo for his wisdom and direction and to Massimo Delle Piane for his help. Compagnia di San Paolo and University of Turin are gratefully acknowledged for funding Project ORTO-114 XNH through Bando per il finanziamento di progetti di ricerca di Ateneo (2011). Authors also acknowledge the CINECA Award N. HP10 BBQD 87-2014 for the availability of high-performance computing resources and support.
Author information
Authors and Affiliations
Corresponding author
Additional information
Published as part of the special collection of articles “CHITEL 2015 - Torino - Italy”.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Halo, M., Ferrari, A.M., Berlier, G. et al. Experimental and first-principles IR characterization of quercetin adsorbed on a silica surface. Theor Chem Acc 135, 123 (2016). https://doi.org/10.1007/s00214-016-1854-4
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s00214-016-1854-4