Abstract
Key message
Two mapping approaches were use to identify and validate milling and baking quality QTL in soft wheat. Two LG were consistently found important for multiple traits and we recommend the use marker-assisted selection on specific markers reported here.
Abstract
Wheat-derived food products require a range of characteristics. Identification and understanding of the genetic components controlling end-use quality of wheat is important for crop improvement. We assessed the underlying genetics controlling specific milling and baking quality parameters of soft wheat including flour yield, softness equivalent, flour protein, sucrose, sodium carbonate, water absorption and lactic acid, solvent retention capacities in a diversity panel and five bi-parental mapping populations. The populations were genotyped with SSR and DArT markers, with markers specific for the 1BL.1RS translocation and sucrose synthase gene. Association analysis and composite interval mapping were performed to identify quantitative trait loci (QTL). High heritability was observed for each of the traits evaluated, trait correlations were consistent over populations, and transgressive segregants were common in all bi-parental populations. A total of 26 regions were identified as potential QTL in the diversity panel and 74 QTL were identified across all five bi-parental mapping populations. Collinearity of QTL from chromosomes 1B and 2B was observed across mapping populations and was consistent with results from the association analysis in the diversity panel. Multiple regression analysis showed the importance of the two 1B and 2B regions and marker-assisted selection for the favorable alleles at these regions should improve quality.
Similar content being viewed by others
References
Arbelbide M, Bernardo R (2006) Mixed-model QTL mapping for kernel hardness and dough strength in bread wheat. Theor Appl Genet 112:885–890
Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES (2007) TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23:2633–2635
Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172:1165–1177
Breseghello F, Finney PL, Gaines C, Andrews L, Tanaka J, Penner G, Sorrells ME (2005) Genetic loci related to kernel quality differences between a soft and a hard wheat cultivar. Crop Sci 45:1685–1695
Cabrera A, Souza E, Guttieri M, Sturbaum A, Hoffstetter A, Sneller C (2014) Genetic diversity, linkage disequilibrium, and genome evolution in soft winter wheat. Crop Sci 54:2433–2448
Campbell KG, Finney PL, Bergman CJ, Gualberto DG, Anderson JA, Giroux MJ, Siritunga D, Zhu J, Gendre F, Roué C, Vérel A, Sorrells ME (2001) Quantitative trait loci associated with milling and baking quality in a soft × hard wheat cross mention of trade names does not connote endorsement of products by The USDA-ARS, Cornell University, Montana State University, The Ohio State University or The University of Minnesota. Crop Sci 41:1275–1285
Dhaliwal AS, Mares DJ, Marshall DR (1987) Effect of 1B/1R chromosome translocation on milling and quality characteristics of bread wheats. Cereal Chem 64(72):76
Elangovan M, Rai R, Dholakia BB, Lagu MD, Tiwari R, Gupta RK, Rao VS, der Röder MS, Gupta VS (2008) Molecular genetic mapping of quantitative trait loci associated with loaf volume in hexaploid wheat (Triticum aestivum). J Cereal Sci 47:587–598
Fenn D, Lukow OM, Bushuk W, DePaw RM (1994) Milling and baking quality of 1BL/1RS translocation wheats I. Effects of genotype and environment. Cereal Chem 71(189):195
Finney PL, Andrews LC (1986) Revised microtesting for soft wheat quality evaluations. Cereal Chem 63:177–182
Groos C, Robert N, Bervas E, Charmet G (2003) Genetic analysis of grain protein-content, grain yield and thousand-kernel weight in bread wheat. Theor Appl Genet 106:1032–1040
Guttieri MJ, Bowen D, Gannon D, O’Brien K, Souza E (2001) Solvent retention capacities of irrigated soft white spring wheat flours. Crop Sci 41:1054–1061
Guttieri MJ, Souza EJ, Sneller C (2008) Nonstarch polysaccharides in wheat flour wire-cut cookie making. J Agric Food Chem 56:10927–10932
Hall MD, Tucker D, Griffey CA, Liu S, Sneller C, Guttieri M, Van Sanford D, Costa J, Marshall D, Brown-Guedira GL (2010) Registration of USG 3209/Jaypee wheat recombinant inbred line mapping population. J Plant regist 4:159–162
Huang XQ, Cloutier S, Lycar L, Radovanovic N, Humphreys DG, Noll JS, Somers DJ, Brown PD (2006) Molecular detection of QTLs for agronomic and quality traits in a doubled haploid population derived from two Canadian wheats (Triticum aestivum L.). Theor Appl Genet 113:753–766
Ishikawa G, Nakamura K, Ito H, Saito M, Sato M, Jinno H, Yoshimura Y, Nishimura T, Maejima H, Uehara Y, Kobayashi F, Nakamura T (2014) Association mapping and validation of QTLs for flour yield in the soft winter wheat variety Kitahonami. PLoS One 9:e111337
Jiang Q, Hou J, Hao C, Wang L, Ge H, Dong Y, Zhang X (2011) The wheat (T. aestivum) sucrose synthase 2 gene (TaSus2) active in endosperm development is associated with yield traits. Funct Integr Genomics 11:49–61
Johnson JM, Griffey CA, Harris CH (1999) Comparative effects of 1BL/1RS translocation in relation to protein composition and milling and baking quality of soft red winter wheat. Cereal Chem 76:467–472
Knapp SJ, Stroup WW, Ross WM (1985) Exact confidence intervals for heritability on a progeny mean basis 1. Crop Sci 25:192–194
Kuchel H, Langridge P, Mosionek L, Williams K, Jefferies SP (2006) The genetic control of milling yield, dough rheology and baking quality of wheat. Theor Appl Genet 112:1487–1495
Kunert A, Naz A, Dedeck O, Pillen K, Léon J (2007) AB-QTL analysis in winter wheat: I. Synthetic hexaploid wheat (T. turgidum ssp. dicoccoides × T. tauschii) as a source of favourable alleles for milling and baking quality traits. Theor Appl Genet 115:683–695
Li HM, Tang ZX, Zhang HQ, Yan BJ, Ren ZL (2013) Major quality trait analysis and QTL detection in hexaploid wheat in humid rain-fed agriculture. Genet Mol Res 12:1740–1751
Ma W, Sutherland M, Kammholz S, Banks P, Brennan P, Bovill W, Daggard G (2007) Wheat flour protein content and water absorption analysis in a doubled haploid population. J Cereal Sci 45:302–308
Mares DJ, Campbell AW (2001) Mapping components of flour and noodle colour in Australian wheat. Aust J Agric Res 52:1297–1309
McCartney CA, Somers DJ, Lukow O, Ames N, Noll J, Cloutier S, Humphreys DG, McCallum BD (2006) QTL analysis of quality traits in the spring wheat cross RL4452 × ‘AC Domain’. Plant Breeding 125:565–575
McKendry AL, Tague DN, Finney PL, Miskin KE (1996) Effect of 1BL.1RS on milling and baking quality of soft red winter wheat. Crop Sci 36:848–851
McKendry AL, Tague DN, Ross K (2001) Comparative effects of 1BL.1RS and 1AL.1RS on soft red winter wheat milling and baking quality Research funded in part by the Biscuit and Cracker Manufacturers Association of America. Crop Sci 41:712–720
Nelson J, Andreescu C, Breseghello F, Finney P, Gualberto D, Bergman C, Peña R, Perretant M, Leroy P, Qualset C, Sorrells M (2006) Quantitative trait locus analysis of wheat quality traits. Euphytica 149:145–159
Parker GD, Chalmers KJ, Rathjen AJ, Langridge P (1999) Mapping loci associated with milling yield in wheat (Triticum aestivum L.). Mol Breeding 5:561–568
Prasad M, Kumar N, Kulwal P, Röder M, Balyan H, Dhaliwal H, Gupta P (2003) QTL analysis for grain protein content using SSR markers and validation studies using NILs in bread wheat. Theor Appl Genet 106:659–667
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data 155:945–959
Ragupathy R, Naeem H, Reimer E, Lukow O, Sapirstein H, Cloutier S (2008) Evolutionary origin of the segmental duplication encompassing the wheat GLU-B1 locus encoding the overexpressed Bx7 (Bx7OE) high molecular weight glutenin subunit. Theor Appl Genet 116:283–296
Reif J, Gowda M, Maurer H, Longin CFH, Korzun V, Ebmeyer E, Bothe R, Pietsch C, Würschum T (2011a) Association mapping for quality traits in soft winter wheat. Theor Appl Genet 122:961–970
Reif J, Maurer H, Korzun V, Ebmeyer E, Miedaner T, Würschum T (2011b) Mapping QTLs with main and epistatic effects underlying grain yield and heading time in soft winter wheat. Theor Appl Genet 123:283–292
Schmidt AL, Liu C, Martin D, Kelly A, McIntyre L (2004) Molecular markers for selected quality traits in Australian hexaploid bread wheat. Australian Agronomy Conference, Brisbane, Australia
Shewry PR, Halford NG (2002) Cereal seed storage proteins: structures, properties and role in grain utilization. J Exp Bot 53:947–958
Smith N, Guttieri M, Souza E, Shoots J, Sorrells M, Sneller C (2011) Identification and validation of QTL for grain quality traits in a cross of soft wheat cultivars pioneer brand 25R26 and foster. Crop Sci 51:1424–1436
Sneller CH, Mather DE, Crepieux S (2009) Analytical approaches and population types for finding and utilizing QTL in complex plant populations. Crop Sci 49:363–380
Somers D, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105–1114
Souza E, Griffey C, Kweon M, Guttieri M (2008) Sources of variation for long-flow experimental milling. Crop Sci 48:1432–1440
Souza EJ, Sneller C, Guttieri MJ, Sturbaum A, Griffey C, Sorrells M, Ohm H, Van Sanford D (2012) Basis for selecting soft wheat for end-use quality. Crop Sci 52:21–31
Sturbaum A, Wade W, Souza E, Sorrells M, Sneller C (2012) Isolating a Milling QTL from a Soft Red Winter Wheat Mapping Population. Presented at the Plant and Animal Genome XX, San Diego, CA, 14 Jan 2012
Sun H, Lü J, Fan Y, Zhao Y, Kong F, Li R, Wang H, Li S (2008) Quantitative trait loci (QTLs) for quality traits related to protein and starch in wheat. Prog Nat Sci 18:825–831
Sun X, Marza F, Ma H, Carver B, Bai G (2010) Mapping quantitative trait loci for quality factors in an inter-class cross of US and Chinese wheat. Theor Appl Genet 120:1041–1051
Tsilo TJ, Jin Y, Anderson JA (2008) Diagnostic microsatellite markers for the detection of stem rust resistance gene Sr36 in diverse genetic backgrounds of wheat all rights reserved. Crop Sci 48:253–261
Uphaus J, Walker E, Shankar M, Golzar H, Loughman R, Francki M, Ohm H (2007) Quantitative trait loci identified for resistance to stagonospora glume blotch in wheat in the USA and Australia. Crop Sci 47:1813–1822
Van Ooijen JW, Voorips RE (2001) JoinMap® 3, Software for the calculation of genetic linkage maps. In: Kyazma BV (ed) Wageningen, Netherlands
Walker C, Campbell KG, Carter B, Kidwell K (2008) Using the solvent retention capacity test when breeding wheat for diverse production environments all rights reserved. Crop Sci 48:495–506
Wang S, Basten CJ, Zeng Z-B (2012) Windows QTL Cartographer 2.5. Department of Statistics. North Carolina State University, Raleigh, NC
Weng Y, Azhaguvel P, Devkota RN, Rudd JC (2007) PCR-based markers for detection of different sources of 1AL.1RS and 1BL.1RS wheat–rye translocations in wheat background. Plant Breed 126:482–486
Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38:203–208
Zhao C, Cui F, Wang X, Shan S, Li X, Bao Y, Wang H (2012) Effects of 1BL/1RS translocation in wheat on agronomic performance and quality characteristics. Field Crops Res 127:79–84
Acknowledgments
Salaries and research support were provided in part by State and Federal funds appropriated to the Ohio Agricultural Research and Development Center, The Ohio State University. The authors thank Dr. David Francis for reviewing an early version of this paper. This material is based upon work supported by the National Institute of Food and Agriculture, US Department of Agriculture, under Agreement No. MIN-13-G19, and Triticeae Coordinated Agricultural Project (2011-68002-30029) of the USDA National Institute of Food and Agriculture.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Ethical standards
The Experiments conducted during this study comply with the current laws of the United States of America.
Additional information
Communicated by X. Xia.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Cabrera, A., Guttieri, M., Smith, N. et al. Identification of milling and baking quality QTL in multiple soft wheat mapping populations. Theor Appl Genet 128, 2227–2242 (2015). https://doi.org/10.1007/s00122-015-2580-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00122-015-2580-3