Abstract
PIG-A, the gene encoding the glycoinositol phospholipid anchor synthetic element that is defective in paroxysmal nocturnal hemoglobinuria (PNH), resides on the X chromosome. In the course of analyses of PIG-A genetic alterations in PNH patients, polymerase chain reaction (PCR) amplification of reverse-transcribed RNA from affected leukocytes of a patient with diminished PIG-A mRNA expression yielded a PIG-A related sequence with 126 nucleotide substitutions and five deletions. In the present study, the origin of this product was investigated. Selective reverse transcription (RT)/PCR amplifications with primers specific for PIG-A and this variant sequence, analyses of RNA from unaffected cells, and differential endonuclease digestions showed that mRNA with this sequence is coexpressed with PIG-A mRNA in a wide range of cell types. Mapping of genomic DNA from human/rodent hybrids showed that the sequence derives from a processed gene, designated PIG-A-II, that is encoded on chromosome 12.
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Armstrong C, Schubert J, Ueda E, Knez JJ, Gelperin D, Hirose S, Silber R, Hollan S, Schmidt R, Medof ME (1992) Affected paroxysmal nocturnal hemoglobinuria T lymphocytes harbor a common defect in assembly of N-acetyl-d-glucosamine inositol phospholipid corresponding to that in class A Thy-1- murine lymphoma mutants. J Biol Chem 267:25347–25351
Battey J, Max EE, McBride OW, Swan D, Leder P (1982) A processed human immunoglobulin ɛ-gene has moved to chromosome 9. Proc Natl Acad Sci USA 79:5956–5960
Bernstein LB, Mount SM, Weiner AM (1983) Pseudogenes for hu man small nuclear RNA U3 appear to rise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. Cell 32:461–472
Chang EH, Gonda MA, Ellis RW, Scolnick EM, Lowy DR (1982) Human genome contains four genes homologous to transforming genes of Harvey and Kirsten murine sarcoma viruses. Proc Natl Acad Sci USA 79:4848–4852
Chen MJ, Shimada T, Moulton AD, Harrison M, Nienhuis AW (1982) Intronless human dihydrofolate reductase genes are derived from processed RNA molecules. Proc Natl Acad Sci USA 79:7435–7439
Chomcynski P, Sacchi N (1987) Single-step method of RNA isolation by guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156–159
Dahl HHM, Brown RM, Hutchison WM, Maragos C, Brown GK (1990) A testis-specific form of the human pyruvate dehydrogenase E1 α subunit is coded for by an intronless gene on chromosome 4. Genomics 8:225–232
D'Cruz OJ, Haas GG Jr (1993) The expression of the complement regulators CD46, CD55, and CD59 by human sperm does not protect them from antisperm antibody- and complement-mediated immune injury. Fertil Steril 59:876–883
Englund PT (1993) The structure and biosynthesis of glycosyl phosphatidylinositol protein anchors. Annu Rev Biochem 62:121–138
Hidaka M, Nagakura S, Horikawa K, Kawaguchi T, Iwamoto N, Kagimoto T, Takatsuki K, Nakakuma H (1993) Impaired glycosylation of glycosyl phosphatidylinositol-anchor synthesis in paroxysmal nocturnal hemoglobinuria leukocytes. Biochem Biophys Res Commun 191:571–579
Hollis GF, Hieter PA, McBride OW, Swan D, Leder P (1982) Processed genes: a dispersed human immunoglobulin gene bearing evidence of RNA-type processing. Nature 296:321–325
Karin M, Richards RI (1982) Human metallothionein genes: primary structure of the metallothionein-II gene and a related processed gene. Nature 299:797–802
Lewin R (1983) How mammalian RNA returns to its genome. Science 219:1052–1054
Miyata T, Takeda J, Iida Y, Yamada N, Inoue N, Takahashi M, Maeda K, Kitani T, Kinoshita T (1993) The cloning of PIG-A, a component in the early step of GPI-anchor biosynthesis. Science 259:1318–1320
Moos M, Gallwitz D (1982) Structure of a human β-actin-related pseudogene which lacks intervening sequences. Nucleic Acids Res 10:7843–7849
Moos M, Gallwitz D (1983) Structure of two human β-actin-related processed gene, one of which is located next to a simple repetitive sequence. EMBO J 2:757–761
Rooney IA, Atkinson JP (1993) Carriage of complement regulatory proteins by vesicles (prostasomes) in seminal plasma. Mol Immunol 30:37
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467
Scarpulla RC, Wu R (1983) Nonallelic members of the cytochrome c multigene family of the rat may arise through different messenger RNAs. Cell 32:473–482
Schiebel K, Weiss B, Wohrls D, Rappold G (1993) A human pseudoautosomal gene, ADP/ATP translocase, escapes X-inactivation whereas a homologue on Xq is subject to X-inactivation. Nat Genet 3:82–87
Sharp PA (1983) Conversion of RNA to DNA in mammals: Alu-like elements and pseudogenes. Nature 301:471–472
Takahashi M, Takeda J, Hirose S, Hyman R, Inoue N, Miyata T, Ueda E, Kitani T, Medof ME, Kinoshita T (1993) Deficient biosynthesis of N-acetylglucosaminyl-phosphatidylinositol, the first intermediate of glycosyl phosphatidylinositol anchor biosynthesis, in cell lines established from patients with paroxysmal nocturnal hemoglobinuria. J Exp Med 177:517–521
Takeda J, Miyata T, Kawagoe K, Iida Y, Endo Y, Fujita T, Takahashi M, Kitani T, Kinoshita T (1993) Deficiency of the GPI anchor caused by a somatic mutation of the PIG-A gene in paroxysmal nocturnal hemoglobinuria. Cell 73:703–711
Van Arsdell SW, Denison RA, Bernstein LB, Weiner AM, Manser T, Gesteland RF (1982) Direct repeats flank three small nuclear RNA pseudogenes in the human genome. Cell 26:11–17
Willard HF, Goss SJ, Holmes MT, Munroe DL (1985) Regional localization of the phosphoglycerate kinase gene and pseudogene on the human X chromosome and assignment of a related DNA sequence to chromosome 19. Hum Genet 71:138–143
Yomtovian R, Prince GM, Medof ME (1993) The molecular basis for paroxysmal nocturnal hemoglobinuria. Transfusion 33:852–873
Yu J, Nagarajan S, Ueda E, Knez JJ, Petersen RB, Medof ME (1994) Characterization of alternatively spliced PIG-A transcripts in normal and paroxysmal nocturnal hemoglobinuria cells. Brazilian J Med Biol Res 27:195–201
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Nagarajan, S., Brown, C.J. & Medof, M.E. Identification of a PIG-A related processed gene on chromosome 12. Hum Genet 95, 691–697 (1995). https://doi.org/10.1007/BF00209489
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DOI: https://doi.org/10.1007/BF00209489