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Localization of a DNA topoisomerase II to mitochondria inDictyostelium discoideum: Deletion mutant analysis and mitochondrial targeting signal presequence

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Abstract

DNA topoisomerase II ofDictyostelium discoideum (TopA), the gene (topA) encoding which we cloned, was shown to have an additional N-terminal region which contains a putative mitochondrial targeting signal presequence. We constructed overexpression mutants which expressed the wild-type or the N-terminally deleted enzyme, and examined its localization by immunofluorescence microscopy and proteinase K digestion experiment. These experiments revealed that the enzyme is located in the mitochondria by virtue of the additional N-terminal region. Furthermore, in the cell extract depleted the enzyme by immunoprecipitation, nuclear DNA topoisomerase II activity was not decreased. These results confirmed that TopA is located in the mitochondria, even through its amino acid sequence is highly similar to those of nuclear type topoisomerase II of other organisms. Thus, this report is the first to establish the location of the mitochondrial targeting signal presequence in DNA topoisomerase II and in proteins ofD. discoideum directly by analyzing deletion mutants.

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Abbreviations

ATP:

adenosine triphosphate

BSA:

bovine serum albumin

BPB:

bromophenol blue

DTT:

dithiothreitol

EDTA:

ethylenediaminetetraacetic acid

FITC:

fluorescein isothiocyanate

kDa:

kilodalton(s)

NP40:

Nonidet P-40

PAGE:

polyacrylamide gel electrophoresis

PCR:

polymerase chain reaction

PMSF:

phenylmethylsulfonyl fluoride

SDS:

sodium dodecylsulfate

References

  • Abe, F. andMaeda, Y. 1994. Precise expression of the cAMP receptor gene, CAR1, during transition from growth to differentiation inDictyostelium discoideum. FEBS Lett.342: 239–241.

    Article  PubMed  CAS  Google Scholar 

  • Adachi, Y., Luke, M. andLaemmli, U.K. 1991. Chromosome assemblyin vitro: topoisomerase II is required for condensation. Cell64: 137–148.

    Article  PubMed  CAS  Google Scholar 

  • Angata, K., Kuroe, K., Yanagisawa, K. andTanaka, Y. 1995. Codon usage, genetic code and phylogeny ofDictyostelium discoideum mitochondrial DNA as deduced from a 7.3-kb region. Curr. Genet.27: 249–256.

    Article  PubMed  CAS  Google Scholar 

  • Birney, M.A. andKlein, C. 1995. Cloning and expression of the a subunit of succinyl-CoA synthetase fromDictyostelium discoideum. Arch. Biochem. Biophys.319: 93–101.

    Article  PubMed  CAS  Google Scholar 

  • Bonner, J.T. 1947. Evidence for the formation of cell aggregate by chemotaxis in the development of the slime moldDictyostelium discoideum. J. Exp. Zool.106: 1–26.

    Article  CAS  Google Scholar 

  • Brill, S.J., DiNardo, S., Voelkel-Meiman, K. andSternglanz, R. 1987. Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA. Nature326: 414–416.

    Article  PubMed  CAS  Google Scholar 

  • Castora, F.J., Lazarus, G.M. andKunes, D. 1985. The presence of two mitochondrial DNA topoisomerases in human acute leukemia cells. Biochem. Biophys. Res. Commun.130: 854–866.

    Article  PubMed  CAS  Google Scholar 

  • Castora, F.J., Vissering, F.F. andSimpson, M.V. 1983. The effect of bacterial DNA gyrase inhibitors on DNA synthesis in mammalian mitochondria. Biochim. Biophys. Acta740: 417–427.

    PubMed  CAS  Google Scholar 

  • Cocucci, S.M. andSussman, M. 1970. RNA in cytoplasmic and nuclear fractions of cellular slime mold amoebas. J. Cell Biol.45: 399–407.

    Article  PubMed  CAS  Google Scholar 

  • Ezekiel, U.R., Towler, E.M., Wallis, J.W. andZassenhaus, H.P. 1994. Evidence for a nucleotide-dependent topoisomerase activity from yeast mitochondria. Curr. Genet.27: 31–37.

    Article  PubMed  CAS  Google Scholar 

  • Fragoso, S.P. andGoldenberg, S. 1992. Cloning and characterization of the gene encodingTrypanosoma cruzi DNA topoisomerase II. Mol. Biochem. Parasitol.55: 127–134.

    Article  PubMed  CAS  Google Scholar 

  • Gartenberg, M.R. andWang, J.C. 1992. Positive super-coiling of DNA greatly diminishes mRNA synthesis in yeast. Proc. Natl. Acad. Sci. USA89: 11461–11465.

    Article  PubMed  CAS  Google Scholar 

  • Hartl, F.-U., Pfanner, N., Nicholson, D.W. andNeupert, W. 1989. Mitochondrial protein import. Biochim. Biophys. Acta988: 1–45.

    PubMed  CAS  Google Scholar 

  • Hsieh, T.-S. 1992. DNA topoisomerases. Curr. Opin. Cell Biol.4: 396–400.

    Article  PubMed  CAS  Google Scholar 

  • Hughes, J.E. andWelker, D.L. 1988. A mini-screen technique for analyzing nuclear DNA from a singleDictyostelium colony. Nucl. Acids Res.16: 2338.

    PubMed  CAS  Google Scholar 

  • Kobayashi, M., Matsuo, Y., Takimoto, A., Suzuki, S., Maruo, F. andShoun, H. 1996. Denitrification, a novel type of respiratory metabolism in fungal mitochondrion. J. Biol. Chem.271: 16263–16267.

    Article  PubMed  CAS  Google Scholar 

  • Komori, K., Kuroe, K., Yanagisawa, K. and Tanaka, Y. 1997. Cloning and characterization of the gene encoding a mitochondrially localized DNA topoisomerase II inDictyostelium discoideum. Biochim. Biophys. Acta, in press.

  • Kosovsky, M.J. andSoslau, G. 1993. Immunological identification of human platelet mitochondrial DNA topoisomerase I. Biochim. Biophys. Acta1164: 101–107.

    PubMed  CAS  Google Scholar 

  • Kumagai, A., Pupillo, M., Gundersen, R., Miake-Lye, R., Devreotes P.N. andFirtel, R.A. 1989. Regulation and function of Gα protein subunits in Dictyostelium. Cell57: 265–275.

    Article  PubMed  CAS  Google Scholar 

  • Lin, J.-H. andCastora, F.J. 1991. DNA topoisomerase II from mammalian mitochondria is inhibited by the antitumor drugs, m-AMSA and VM-26. Biochem. Biophys. Res. Commun.176: 690–697.

    Article  PubMed  CAS  Google Scholar 

  • Lin, J.-H., Lazarus, G.M. andCastora, F.J. 1992. DNA topoisomerase I from calf thymus mitochondria is associated with a DNA binding, inner membrane protein. Arch. Biochem. Biophys.293: 201–207.

    Article  PubMed  CAS  Google Scholar 

  • Loomis, W.F. 1971. Sensitivity ofDictyostelium discoideum to nucleic acid analogues. Exp. Cell Res.64: 484–486.

    Article  PubMed  CAS  Google Scholar 

  • Melendy, T., Sheline, C. andRay, D.S. 1988. Localization of a type II topoisomerase to two sites at the periphery of the kinetoplast DNA of Crithidia fasciculata. Cell55: 1083–1088.

    Article  PubMed  CAS  Google Scholar 

  • Murthy, V. andPasupathy, K. 1994. Evidence for the presence of topoisomerase like activity in mitochondria ofSaccharomyces cerevisiae. Biochem. Biophys. Res. Commun.198: 387–392.

    Article  PubMed  CAS  Google Scholar 

  • Pasion, S.G., Hines, J.C., Aebersold, R. andRay, D.S. 1992. Molecular cloning and expression of the gene encoding the kinetoplast-associated type II DNA topoisomerase ofCrithidia fasciculata. Mol. Biochem. Parasitol.50: 57–68.

    Article  PubMed  CAS  Google Scholar 

  • Poljak, L. andKäs, E. 1995. Resolving the role of topoisomerase II in chromatin structure and function. Trends Cell Biol.5: 348–354.

    Article  PubMed  CAS  Google Scholar 

  • Rose, D. andHolm, C. 1993. Meiosis-specific arrest revealed in DNA topoisomerase II mutants. Mol. Cell. Biol.13: 3445–3455.

    PubMed  CAS  Google Scholar 

  • Rose, D., Thomas, W. andHolm, C. 1990. Segregation of recombined chromosomes on meiosis I requires DNA toposiomerase II. Cell60: 1009–1017.

    Article  PubMed  CAS  Google Scholar 

  • Schultz M.C., Brill, S.J., Ju, Q., Sternglanz, R. andReeder, R.H. 1992. Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation. Genes Dev.6: 1332–1341.

    PubMed  CAS  Google Scholar 

  • Shiozaki, K. andYanagida, M. 1991. A functional 125-kDa core polypeptide of fission yeast DNA topoisomerase II. Mol. Cell. Biol.11: 6093–6102.

    PubMed  CAS  Google Scholar 

  • Shiozaki, K. andYanagida, M. 1992. Functional dissection of the phosphorylated termini of fission yeast DNA topoisomerase II. J. Cell Biol.119: 1023–1036.

    Article  PubMed  CAS  Google Scholar 

  • Strauss, P.R. andWang, J.C. 1990. TheTOP2 gene ofTrypanosoma brucei: a single-copy gene that shares extensive homology with otherTOP2 genes encoding eukaryotic DNA topoisomerase II. Mol. Biochem. Parasitol.38: 141–150.

    Article  PubMed  CAS  Google Scholar 

  • Troll, H., Winckler, T., Lascu, I., Müqler, N., Saurin, W., Véron, M. andMutzel, R. 1993. Separate nuclear genes encode cytosolic and mitochondrial nucleoside diphosphate kinase inDictyostelium discoideum. J. Biol. Chem.268: 25469–25475.

    PubMed  CAS  Google Scholar 

  • Uemura, T., Ohkura, H., Adachi, Y., Morino, K., Shiozaki, K. andYanagida, M. 1987. DNA topoisomerase II is required for condensation and separation of mitotic chromosomes in S. pombe. Cell50: 917–925.

    Article  PubMed  CAS  Google Scholar 

  • Wang, J.C. 1991. DNA topoisomerases: why so many? J. Biol. Chem.266: 6659–6662.

    PubMed  CAS  Google Scholar 

  • Wang, J.C. 1996. DNA topoisomerases. Annu. Rev. Biochem.65: 635–692.

    Article  PubMed  CAS  Google Scholar 

  • Wang, J.C., Caron, P.R. andKim, R.A. 1990. The role of DNA topoisomerases in recombination and genome stability: a double-edged sword? Cell62: 403–406.

    Article  PubMed  CAS  Google Scholar 

  • Wang, J., Kearney, K., Derby, M. andWernette, C.M. 1995. On the relationship of the ATP-independent, mitochondrial associated DNA topoisomerase ofSaccharomyces cerevisiae to the nuclear topoisomerase I. Biochem. Biophys. Res. Commun.214: 723–729.

    Article  PubMed  CAS  Google Scholar 

  • Watt, P.M. andHickson, I.D. 1994. Structure and function of type II DNA topoisomerases. Biochem. J.303: 681–695.

    PubMed  CAS  Google Scholar 

  • Yamaguchi, N., Higa, M., Aiba, K., Fang, H., Tanaka, Y. andUrshihara, H. 1996. Targeted disruption of genes for gp138, a cell-fusion-related protein inDictyostelium discoideum, revealed the existence of a third gene. Develop. Growth Differ.38: 271–279.

    Article  CAS  Google Scholar 

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Tsukuba Advanced Research Alliance (TARA researcher for the Sakabe project)

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Komori, K., Maruo, F., Morio, T. et al. Localization of a DNA topoisomerase II to mitochondria inDictyostelium discoideum: Deletion mutant analysis and mitochondrial targeting signal presequence. J. Plant Res. 110, 65–75 (1997). https://doi.org/10.1007/BF02506844

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  • DOI: https://doi.org/10.1007/BF02506844

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