Abstract
This review examines interactions between DNA and soil with an emphasis on the persistence and stability of DNA in soil. The role of DNA in genetic transformation in soil microorganisms will also be discussed. In addition, a postulated mechanism for stabilization and elongation/asserbly of primitive genetic material and the role of soil particles, salt concentrations, temperature cycling and crystal formation is examined.
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References
Aardema BW, Lorenz MG, & Krumbein WE (1983) Protection of sediment-adsorbed transforming DNA against enzymatic inactivation. Appl. Environ. Microbiol. 46: 417–420.
Akkermans ADL, Van Elsas JD, De Bruijn FJ (1995) Molecular Microbial Ecology Manual, Kluwer Academic Publishers, Dordrecht, Th e Netherlands
Alef K, & Nannipieri P (Eds) (1995) Methods in Soil Microbiology and Biochemistry. Academic Press, New York
Atlas RM, Bartha R (1993) Microbial Ecology, Benjamin/Cummings Publishing Company, Inc., Redwood City, CA, USA
Bakken LR & Olsen RA (1989) DNA-content of soil bacteria of diffenent cell size. Soil Biol. Biochem. 21: 789–793
Bengston S (Ed) (1994) Early Life on Earth. Columbia University Press, New York
Blackburn NT, Seech AG & Trevors JT (1995) Survival and transport of lux-lac marked Pseudomonas fluorescens strain in uncontaminated and chemically contaminated soils. System. Appl. Microbiol. 17: 574–580
Cairns-Smith AG (1985) Seven Clues to the Origin of Life: A Sci entific Detective Story, Cambridge University Press, Cambridge, UK
Cohen J (1995) Getting all turned around over the origins of life on earth. Science 267: 1265–1266
Dai X, De Mesmaeker A, Joyce GF (1995) Cleavage of an amide bond by ribozyme. Science 267: 237–240
DeFlaun MF, Paul JH, Jeffrey WH (1987) Distribution and molecular weight of dissolved DNA in subtropical estuarine and oceanic environments. Mar. Ecol. Prog. Ser. 38: 65–73
Dijkmans R, Jagers A, Kreps S, Collard J-M, Mergeay M (1993) Rapid method for purification of soil DNA for hybridization and PCR analysis. Microb. Releases 2: 29–34
England LS, Lee H, & Trevors JT (1995) Recombinant and wildtype Pseudomonas aureofaciens strains introduced into soil: effect on cellulose and straw decomposition. Mol. Ecol. 4: 221–230
Flemming CA, Leung KT, Lee H, Trevors JT Greer C (1994) Survival of a lux-lac marked biosurfactant-producing Pseudomonas aeruginosa UG2 strain in soil: monitored by non-selective plating and PCR techniques. Appl. Environ. Microbiol. 60: 1606–1613
Gauthier MJ (Ed) (1992) Gene Transfer and Environments, Springer-Verlag, Heidelberg, Germany
Garko KA, Stewart GJ (1994) The effect of divalent cations on the binding of DNA to marine sediment. Microb. Releases 2: 191–199
Gesteland RF & Atkins JF (Eds) (1993) The RNA World, Col Spring Harbor Laboratory Press, Plainview, New York USA
Graham JB & Istock CA (1978) Gene exchange in Bacillus subtilis in soil. Mol. Gen. Genet. 166: 287–290
Greaves MP & Wilson MJ (1969) The adsorption of nucleic acids by montmorillonite. Soil Biol. Biochem. 1: 317–323
Greaves MP & Wilson MJ (1970) The degradation of nucleic acids and montmorillonite-nucleic acid complexes by soil microorganisms. Soil Biol. Biochem. 2:257–268
Holben WE, Jannsson JK, Chelm BK, Tiedje JM (1988) DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54: 703–711
Jackman SC, Lee H, Trevors JT (1992) Survival, detection and cortainment of bacteria. Microb. Releases 1: 125–154
Joyce GF, Orgel LE (1993) Prospects for understanding the origin of the RNA world. In: The RNA World (Eds Gesteland RF & Atkins JF) Cold Spring Harbor Laboratory Press, Plainview, New York USA
Khanna M & Stotzky G (1992) Transformation of Bacillus subtilis by DNA bound on montmorillonite and effect of DNase on the transforming ability of bound DNA. Appl. Environ. Microbiol. 58: 1930–1939
Klug WS, Cummings MR (1993) Essentials of Genetics, Macmillan Publishing Company, New York
Klug WS, Cummings MR (1994) Concpts of Genetics, Macmillan College Company, New York
Koch AL (1994) Development and diversification of the last universal ancestor. J. theor. Biol. 168: 269–280
Leung K, England LS, Weir S, Cassidy M & Trevors JT (1994) Microbial diversity in soil: effect of releasing genetically-engineered bacteria. Mol. Ecol. 3: 413–422
Leung K, Trevors JT, Van Elsas JD (1995a) Extraction and amplification of DNA from the rhizosphere and rhizoplane of plants. In: Trevors JT, Van Elsas (Eds) Nucleic Acids in the Environment: Methods and Applications, Springer-Verlag, Germany
Leung K, Cassidy MB, Holmes SB, Lee H & Trevors JT (1995b) Survival of k-carrageenan-encapsulated and unencapsulated Pseudomonas aeruginosa UG2Lr cells in forest soil monitored by polymerase chain reaction and spread plating FEMS Microbiol. Ecol. 16: 71–82
Levy SB & Miller RV (Eds) (1989) Gene Transfer in the Environment, McGraw-Hill, New York
Lorenz MG, Aardema BW & Krumbein WE (1981) Interaction of marine sediment with DNA and DNA availability to nucleases. Mar. Biol. 64: 225–230
Lorenz MG & Wackernagel W (1987) Adsorption of DNA to sand and variable degradation of adsorbed DNA. Appl. Environ. Microbiol. 53: 2948–2952
Lorenz MG, Wackernagel W (1992) Stimulation of natural genetic transformation of Pseudomonas stutzeri in extracts of various soils by nitrogen or phosphorous limitation and influence of temperature and pH. Microb. Releases 1: 173–176
Lorenz MG & Wackernagel W (1994) Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Rev. 58: 563–602
Lorenz MG, Aardema BW & Wackernagel W (1988) Highly efficient genetic transformation of Bacillus subtilis attached to sand grains. J. Gen. Microbiol. 134: 107–122
Moore JA (1993) Science as way of Knowing. Harvard University Press, Cambridge, Massachusetts, USA
Nielsen PE, Egholm M, Berg RH, Buchardt O (1991) Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science 254: 1497–1500
Ogram A, Sayler G, Gustin D & Lewis R (1988) DNA sorption to soils and sediments. Environ. Sci. Technol. 22: 982–984
Ogram AV, Mathot ML, Harsh JB, Boyle J, Pettigrew Jr. CA (1994) Effects of DNA polymer length on its adsorption to soils. Appl. Environ. Microbiol. 60: 393–396
Porter RD (1988) Modes of gene transfer in bacteria. In: Genetic Recombination (Eds. R. Kucherlapat & G.R. Smith) American Society Microbiology, Washington, USA
Romanowski G, Lorenz MG & Wackernagel W (1991) Adsorption of plasmid DNA to mineral surfaces and protection against DNase I. Appl. Environ. Microbiol. 57: 1057–1061
Selenska S, Klingmuller W (1992) Direct recovery and molecular analysis of DNA from soil. Microb. Releases 1: 41–46
Smalla K, Cresswell N, Mendonca-Hagler LC, Wolters A, Van Elsas JD (1993) Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification. J. Appl. Bacteriol. 74: 78–85
Steffan RJ, Goksoyr J, Bej AK, Atlas RM (1988) Recovery of DNA from soils and sediments. Appl. Environ. Microbiol. 54: 2908–2915
Stewart GJ & Carlson CA (1986) The biology of natural transformation. Ann. Rev. Microbiol. 40: 211–235
Stotzky G & Babich H (1986) Survival of, and genetic transfer by, genetically engineered bacteria in natural environments. In: Adv. Appl. Microbiol. Vol 31, (Ed. A. I. Laskin), Academic Press, New York, pp 93–138
Theng BKG (1979) formation and properties of clay-polymer complexes. Elsevier Science Publishing Co., Amsterdam
Torsvik VL, Goksoyr J (1978) Determination of bacterial DNA in soil. Soil Biol. Biochem. 10: 7–12
Trevors JT (1988) Use of microcosms to study genetic interactions between microorganisms. Microbiol. Sci. 5: 132–136
Trevors JT (1992) Extraction of DNA from soil Microbial Releases. 1: 3–9
Trevors JT (1995) Molecular evolution in bacteria. Antonie van Leeuwenhoek. 67: 315–324
Trevors JT & Van Elsas JD (Eds.) (1995) Nucleic Acids in the Environment: Methods and Applications, Springer-Verlag, Heidelberg, Germany
Trevors JT 1996. Nucleic acids in the environment. Current Opinion in Biotechnology. 7(3): (in press)
Trevors JT & Van Elsas J D (1996) Quantification of gene transfer in soil and rhizosphere. In: Manual of Environmental Microbiology, American Society for Microbiology, ASM Press, Washington D.C. (in press)
Trevors JT, Barkay T & Bourquin AW (1987) Gene transfer among bacteria in soil and aquatic environiments: a review. Can. J. Microbiol. 33: 191–198
Trevors JT, Kuikman P & Watson R (1994) Interactions between transgenic plants and biogeochemical cycles. Mol. Ecol. 3: 57–64
Tsai Y-L, Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57: 1070–1074
Turner DH, Bevilacqua PC (1993) Thermodynamic considerations for evolution by RNA. In. The RNA World (Eds Gesteland RF & Atkins JF) Cold Spring Harbor Laboratory Press, Plainview, New York, USA
Van Elsas JD, Smit E (1995) Some considerations on gene transfer between bacteria in soil and rhizosphere. In: Molecular Ecology of Rhizosphere Microorganisms (Eds. F O'Gara, DN Dowling, B Boesten) (pp 151–164) VCH, Weinheim, Germany
Van Elsas JD & Trevors JT (1991) Environmental risks and fate of genetically engineered microorganisms in soil. J. Environ. Sci. Health A 26(6): 981–1001
Wachtershauser G. (1988) Pyrite formation, the first energy source for life: a hypothesis. System. Appl. Microbiol. 10: 207–210
Weinberg SR & Stotzky G (1972) Conjugation and genetic recombination of Escherichia coli in soil. Soil Biol. Biochem. 4: 171–180
Wellington EMH & Van Elsas JD (1992) Gene transfer between microorganisms in the natural environment. Pergamon Press, London
Woese C R (1987) Bacterial evolution. Microbiol. Rev. 51: 221–271
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Trevors, J.T. DNA in soil: adsorption, genetic transformation, molecular evolution and genetic microchip. Antonie van Leeuwenhoek 70, 1–10 (1996). https://doi.org/10.1007/BF00393564
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DOI: https://doi.org/10.1007/BF00393564