Skip to main content
Log in

Cloning, nucleotide sequence, and regulation of MET14, the gene encoding the APS kinase of Saccharomyces cerevisiae

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

The MET14 gene of Saccharomyces cerevisiae, encoding APS kinase (ATP: adenylylsulfate-3′-phosphotransferase, EC 2.7.1.25), has been cloned. The nucleotide sequence predicts a protein of 202 amino acids with a molecular mass of 23060 dalton. Translational fusions of MET14 with the β-galactosidase gene (lacZ) of Escherichia coli confirmed the results of primer extension and Northern blot analyses indicating that the ca. 0.7 kb mRNA is transcriptionally repressed by the presence of methionine in the growth medium. By primer extension the MET14 transcripts were found to start between positions −25 and −45 upstream of the initiator codon. Located upstream of the MET14 gene is a perfect match (positions −222 to −229) with the previously proposed methionine-specific upstream activating sequence (UASMet). This is the same as the consensus sequence of the Centromere DNA Element I (CDEI) that binds the Centromere Promoter Factor I (CPFI) and of two regulatory elements of the PH05 gene to which the yeast protein PH04 binds. The human oncogenic protein c-Myc also has the same recognition sequence. Furthermore, in the 270 by upstream of the MET14 coding region there are several matches with a methionine-specific upstream negative (URSMet) control element. The significance of these sequences was investigated using different upstream deletion mutations of the MET14 gene which were fused to the lacZ gene of E. coli and chromosomally integrated. We find that the methionine-specific UASMet and one of the URSMet lie in regions necessary for strong activation and weak repression of MET14 transcription, respectively. We propose that both types of control are exerted on MET14.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Arndt K, Fink GR (1986) GCN4 protein, a positive transcription factor in yeast, binds general control promoters at all 5′ TGACTC 3′ sequences. Proc Natl Acad Sci USA 83:8516–8520

    Google Scholar 

  • Baker RE, Masison DC (1990) Isolation of the gene encoding the Saccharomyces cerevisiae centromere-binding protein CPl. Mol Cell Biol 10:2458–2467

    Google Scholar 

  • Bennetzen JL, Hall BD (1982) Codon selection in yeast. J Biol Chem 257:3026–3031

    Google Scholar 

  • Berben G, Legrain M, Gilliquet V, Hilger F (1990) The yeast regulatory gene PHO4 encodes a helix-loop-helix motif. Yeast 6:451–454

    Google Scholar 

  • Berk AJ, Sharp PA (1977) Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids. Cell 12:721–732

    Google Scholar 

  • Blackwell TK, Kretzner L, Blackwood EM, Eisenman RN, Weitraub H (1990) Sequence-specific DNA binding the c-Myc protein. Science 250:1149–1151

    Google Scholar 

  • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  CAS  PubMed  Google Scholar 

  • Butler JS, Platt T (1988) RNA processing generates the mature 3′ end of yeast CYC1 messenger RNA in vitro. Science 242:1270–1274

    Google Scholar 

  • Cai M, Davis RW (1990) Yeast centromere binding protein CBF1 of the helix-loop-loop protein family, is required for chromosome stability and methionine prototrophy. Cell 61:437–446

    Article  CAS  PubMed  Google Scholar 

  • Cherest H, Thao NN, Surdin-Kerjan Y (1985) Transcriptional regulation of the MET3 gene of Saccharomyces cerevisiae. Gene 34:269–281

    Google Scholar 

  • Cherest H, Kerjan P, Surdin-Kerjan Y (1987) The Saccharomyces cerevisiae MET3 gene: nucleotide sequence and relationship of the 5′ non-coding region to that of MET25. Mol Gen Genet 210:307–313

    Google Scholar 

  • Cherest H, Thomas D, Surdin-Kerjan Y (1990) Nucleotide sequence of the MET8 gene of Saccharomyces cerevisiae. Nucleic Acids Res 18:659

    Google Scholar 

  • Chevallier MR, Aigle M (1979) Qualitative detection of penicillinase produced by yeast strains carrying chimeric yeast-coli plasmids. FEBS Lett 108:179–180

    Google Scholar 

  • Cigan AM, Donahue TF (1987) Sequence and structural features associated with translational initiator regions in yeast — a review. Gene 59:1–18

    Google Scholar 

  • Dever TE, Glynias MJ, Merrick WC (1987) GTP-binding domain: three consensus sequence elements with distinct spacing. Proc Natl Acad Sci USA 84:1814–1818

    CAS  PubMed  Google Scholar 

  • Donahue TF, Davis RS, Lucchini G, Fink GR (1983) A short nucleotide sequence required for regulation of HIS4 by the general control system of yeast. Cell 32:89–98

    Google Scholar 

  • Erhart E, Hollenberg CP (1983) The presence of a defective Leu2 gene on 2 μ DNA recombinant plasmids of Saccharomyces cerevisae is responsible for curing and high copy number. J Bacteriol l56:625–635

    Google Scholar 

  • Fitzgerald-Hayes M, Buhler J-M, Cooper TG, Carbon J (1982a) Isolation and subcloning analysis of functional centromere DNA (CENI1) from Saccharomyces cerevisiae chromosome XI. Mol Cell Biol 2:82–87

    Google Scholar 

  • Fitzgerald-Hayes M, Clarke L, Carbon J (1982b) Nucleotide sequence comparisons and functional analysis of yeast centromere DNAs. Cell 29:235–244

    Google Scholar 

  • Gietz RD, Sugino A (1988) New yeast Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74: 527–534

    Article  CAS  PubMed  Google Scholar 

  • Hackett PB, Fuchs JA, Messing JW (1984) An introduction to recombinant DNA techniques. Basic experiments in gene manipulation. The Benjamin/Cummings Publishing Company, Menlo Park California, p 157

    Google Scholar 

  • Hadfield C, Cashmore AM, Meacock PA (1986) An efficient chloramphenicol-resistance marker for Saccharomyces cerevisiae and Escherichia coli. Gene 45:149–158

    Google Scholar 

  • Hamlyn PH, Brownlee GG, Cheng CC, Gait MJ, Milstein C (1981) Complete sequence of constant and 3′ noncoding regions of an immunoglobulin mRNA using the dideoxynucleotide method of RNA sequencing. Cell 15:1067–1075

    Google Scholar 

  • Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166:557–580

    CAS  PubMed  Google Scholar 

  • Hayashi N, Oshima Y (1991) Specific cis-acting sequence for PHO8 expression interacts with PHO4 protein, a positive regulatory factor, in Saccharomyces cerevisiae. Mol Cell Biol 11:785–794

    Google Scholar 

  • Henikoff S (1984) Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28:351–359

    Google Scholar 

  • Hill DE, Hope IA, Macke JP, Struhl K (1986) Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator protein. Science 234:451–457

    Google Scholar 

  • Hinnebusch AG, Fink GR (1983) Repeated DNA sequences upstream from HIS1 also occur at several other co-regulated genes in Saccharomyces cerevisiae. J Biol Chem 258:5238–5247

    Google Scholar 

  • Hoffman CS, Winston F (1987) A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267–272

    Article  CAS  PubMed  Google Scholar 

  • Holmes DS, Quigley M (1981) A rapid boiling method for the preparation of bacterial plasmids. Anal Biochem 114:193–197

    Google Scholar 

  • Hope IA, Struhl K (1985) GCN4 protein, synthesized in vitro, binds HIS3 regulatory sequences: implications for general control of amino acid biosynthetic genes in yeast. Cell 43:177–188

    Google Scholar 

  • Johnson PF, McKnight SL (1989) Eukaryotic transcriptional regulatory proteins. Annu Rev Biochem 58:799–839

    Google Scholar 

  • Jones EW, Fink GR (1982) Regulation of amino acid and nucleotide biosynthesis in yeast. In: Strathern JH, Jones EW, Broach JR (eds) The molecular biology of the yeast Saccharomyces. Cold Spring Harbor Laboratory, Cold spring Harbor, NY, pp 181–300

    Google Scholar 

  • Kerjan P, Cherest H, Surdin-Kerjan Y (1986) Nucleotide sequence of the Saccharomyces cerevisiae MET25 gene. Nucleic Acids Res 14:7861–7871

    Google Scholar 

  • King PV, Blakesley RW (1986) Optimizing DNA ligations for transformation. Focus 8(1):1–3

    Google Scholar 

  • Korch C, Hagblom P, Normark S (1983) Sequence-specific DNA modification in Neisseria gonorrhoeae. J Bacteriol 155:1324–1332

    Google Scholar 

  • Kozak M (1989) The scanning model for translation: an update. J Cell Biol 108:229–241

    Google Scholar 

  • Langin T, Faugeron G, Goyon C, Nicolas A, Rossignol JL (1986) The MET2 gene of Saccharomyces cerevisiae: molecular cloning and nucleotide sequence. Gene 49:283–293

    Google Scholar 

  • Lorincz A (1984) Quick preparation of plasmid DNA from yeast. Focus 6(4):11

    Google Scholar 

  • Maicas E, Friesen JD (1990) A sequence pattern that occurs at the transcription initial region of yeast RNA polymerase 11 promoters. Nucleic Acid Res 18:3387–3393

    Google Scholar 

  • Masselot M, Surdin-Kerjan Y (1977) Methionine biosynthesis in Saccharomyces cerevisiae. II. Gene-enzyme relationships in the sulfate assimilation pathway. Mol Gen Genet 154:23–30

    Google Scholar 

  • Mellor J, Jiang W, Funk M, Rathjen J, Barnes CA, Hinz T, Hegemann JH, Philippsen P (1990) CPF1, a yeast protein which functions in centromeres and promoters. EMBO J 9:4017–4026

    Google Scholar 

  • Mortimer RK, Schild D, Contopoulou CR, Kans JA (1989) Genetic map of Saccharomyces cerevisiae, edition 10. Yeast 5:321–403

    Google Scholar 

  • Mountain HA, Byström AS, Tang Larsen J, Korch C (1991) Four major transcriptional responses in the methionine/threonine biosynthetic pathway of Saccharomyces cerevisiae. Yeast, in press

  • Mountain HA, Korch C (1991) TDH2 is linked to MET3 on chromosome X of Saccharomyces cerevisiae. Yeast, in press

  • Murre C, McCaw PS, Baltimore D (1989) A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins. Cell 56:777–783

    Article  CAS  PubMed  Google Scholar 

  • Myers AM, Tzagoloff A, Kinney DM, Lusty CJ (1986) Yeast shuttle and integrative vectors with multiple cloning sites suitable for construction of lacZ fusions. Gene 45:299–310

    Google Scholar 

  • Ponticelli AS, Struhl K (1990) Analysis of Saccharomyces cerevisiae his3 transcription in vitro: biochemical support for multiple mechanisms of transcription. Mol Cell Biol 10:2832–2839

    Google Scholar 

  • Proudfoot NJ, Brownlee GG (1976) 3′ noncoding region sequences in the eukaryotic messenger RNA. Nature 263:211–214

    Google Scholar 

  • Ptashne M, Gann AAF (1990) Activators and targets. Nature 346:329–331

    Google Scholar 

  • Renosto F, Seubert PA, Knudson P, Segel IH (1984) APS kinase from Penicillium chrysogenum. Dissociation and reassociation of subunits as the basis of the reversible heat inactivation. J Biol Chem 260:1535–1544

    Google Scholar 

  • Renosto F, Schultz T, Re E, Mazer J, Chandler CJ, Barron A, Segel IH (1985) Comparative stability and catalytic and chemical properties of the sulfate-activating enzymes from Penicillium chrysogenum (mesophile) and Penicillium duponti (thermophile). J Bacteriol 164:674–683

    Google Scholar 

  • Reynolds A, Lundblad V (1989) Yeast vectors and assays for expression of cloned genes. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) Current protocols in molecular biology. Wiley, New York, pp 13.6.1–13.6.4

    Google Scholar 

  • Robbins PW, Lipman F (1958) Separation of two enzymatic phases in active sulfate synthesis. J Biol Chem 233:686–690

    Google Scholar 

  • Rose M, Winston F (1984) Identification of a Ty insertion within the coding sequence of the S. cerevisiae URA3 gene. Mol Gen Genet 193:557–590

    Google Scholar 

  • Rose M, Casadaban MJ, Botstein D (1981) Yeast genes fused to β-galactosidase in Escherichia coli can be expressed normally in yeast. Proc Natl Acad Sci USA 78:2460–2464

    Google Scholar 

  • Satischandran C, Markham GD (1989) Adenosine-5′-phosphosul-fate kinase from Escherichia coli. Purification, characterization, and identification of phosphorylated enzyme intermediate. J Biol Chem 264:15012–15021

    Google Scholar 

  • Schiestl RH, Gietz RD (1989) High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr Genet 16:339–346

    Google Scholar 

  • Schriek U, Schwenn JD (12986) Properties of the purified APS-kinase from Escherichia coli and Saccharomyces cerevisiae. Arch Microbiol 145:32–38

  • Schwenn JD, Jender HG (1981) A kinetic investigation of the APS-kinase from Chlamydomonas reinhardii. Phytochemistry 20:601–604

    Google Scholar 

  • Sharp PM, Tuohy TMF, Mosurski KR (1986) Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res 14:5125–5143

    Google Scholar 

  • Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, Wright F (1988) Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Res 16:8207–8211

    Google Scholar 

  • Sherman F, Fink GR, Hicks JB (1986) Laboratory course manual for methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp 163–165

    Google Scholar 

  • Silverman SI, Rose M, Botstein D, Fink GR (1982) Regulation of HIS4-lacZ fusions in Saccharomyces cerevisiae. Mol Cell Biol 2:1212–1219

    Google Scholar 

  • Struhl K (1982) Regulatory sites for HIS3 expression in yeast. Nature 300:284–287

    Google Scholar 

  • Struhl K (1989) Molecular mechanisms of transcriptional regulation in yeast. Annu Rev Biochem 58:1051–1077

    Google Scholar 

  • Tabor S, Richardson CC (1987) DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proc Natl Acad Sci USA 84:4767–4771

    Google Scholar 

  • Thomas D, Surdin-Kerjan Y (1987) SAM1, the structural gene for one of the S-adenosylmethionine synthetases in Saccharomyces cerevisiae: sequence and expression. J Biol Chem 262:16704–16709

    Google Scholar 

  • Thomas D, Rothstein R, Rosenberg N, Surdin-Kerjan Y (1988) SAM2 encodes the second methionine S-adenosyl transferase in Saccharomyces cerevisiae: physiology and regulation of both enzymes. Mol Cell Biol 8:5132–5139

    Google Scholar 

  • Thomas D, Cherest H, Surdin-Kerjan Y (1989) Elements involved in S-adenosylmethionine-mediated regulation of the Saccharomyces cerevisiae MET25 gene. Mol Cell Biol 9:3292–3298

    Google Scholar 

  • Thomas D, Barbey R, Surdin-Kerjan Y (1990) Gene-enzyme relationship in the sulfate assimilation pathway of Saccharomyces cerevisiae; study of the 3′-phosphoadenylylsulfate reductase structural gene. J Biol Chem 265:15518–15524

    Google Scholar 

  • Vogel K, Hinnen A (1990) The yeast phosphatase system. Mol Microbiol 4:2013–2017

    Google Scholar 

  • Vogel K, Hörz W, Hinnen A (1989) The two positively acting regulatory proteins PHO2 and PHO4 physically interact with PHO5 upstream activation regions. Mol Cell Biol 9:2050–2057

    Google Scholar 

  • Wolfner M, Yep D, Messenguy F, Fink GR (1975) Integration of amino acid biosynthesis into the cell cycle of Saccharomyces cerevisiae. J Mol Biol 96:273–290

    Google Scholar 

  • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mp18 and pUC19. Gene 33:103–119

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by C.P. Hollenberg

Present address: Imperial Holly Research and Development Center, 5720 Mark Dubling Boulevard, Colorado Springrs, Co. USA

Rights and permissions

Reprints and permissions

About this article

Cite this article

Korch, C., Mountain, H.A. & Byström, A.S. Cloning, nucleotide sequence, and regulation of MET14, the gene encoding the APS kinase of Saccharomyces cerevisiae . Molec. Gen. Genet. 229, 96–108 (1991). https://doi.org/10.1007/BF00264218

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00264218

Key words

Navigation