Abstract
We have optimized conditions for demethylation of the genome and induction of a silent, hypermethylated T-DNA gene (ipt) by 5-azacytosine (5-azaCyt) derivatives in a suspension culture of tobacco cells. In this system, 5-azacytidine (5-azaC) is more effective in causing genomic demethylation and ipt gene induction than 5-azaCyt or 5-azadeoxycytidine (5-azadC). A single treatment with 2.5 μM 5-azaC resulted in a maximal level of ipt gene induction without inhibiting cell growth. However, we could not reduce the level of genomic methylation below approximately 2/3 of that found in untreated controls, even after extensive 5-azaC treatment. Furthermore, remethylation of the genome occurred after removal of 5-azaC. The use of 5-azaC as an inducer of silent plant genes is discussed, along with differences in the response of plant and animal genomes to demethylating agents.
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Abbreviations
- C:
-
cytidine
- Cyt:
-
cytosine
- 5-azaCyt:
-
5-azacytosine
- 5-azaC:
-
5-azacytidine
- 5-azadC:
-
5-azadeoxycytidine
- m5Cyt:
-
5-methylcytosine
References
Adams RLP, Burdon RH: Molecular Biology of DNA Methylation. Springer-Verlag, New York (1985).
Adams RLP, Fulton J, Kirk D: The effect of 5-azadeoxycytidine on cell growth and DNA methylation. Biochim Biophys Acta 697: 286–294 (1982).
Amasino RM, Powell ALT, Gordon MP: Changes in T-DNA methylation and expression are associated with phenotypic variation and plant regeneration in a crown gall tumor line. Mol Gen Genet 197: 437–446 (1984).
Amasino RM, Miller CO: Effect of temperature on the morphology and cytokinin levels of tobacco crown gall teratoma tissues. Plant Sci Lett 28: 245–253 (1982).
An G: Development of plant promoter expression vectors and their use for analysis of differential activity of nopaline synthase promoter in transformed tobacco cells. Plant Physiol 81: 86–91 (1986).
Bianchi MW., Viotti A: DNA methylation and tissue-specific transcription of the storage protein genes of maize. Plant Mol Biol 11: 203–214 (1988).
Bolden AH, Nalin CM, Ward CA, Poonian MS, Weissbach A: Primary DNA sequence determines sites of maintenance and de novo methylation by mammalian DNA methyltransferases. Mol Cell Biol 6: 1135–1140 (1986).
Cedar H: DNA methylation and gene activity. Cell 53: 3–4 (1988).
Chandler VL, Walbot V: DNA modification of a maize transposable element correlates with loss of activity. Proc Natl Acad Sci USA 83: 1767–1771 (1986).
Chomet PS, Wessler S, Dellaporta SL: Inactivation of the maize transposable element Activator (Ac) is associated with its DNA modification. EMBO J 6: 295–302 (1987).
Creusot F, Acs G, Christman JK: Inhibition of DNA methyltransferase and induction of Friend erythroleukemia cell differentiation by 5-azacytidine and 5-aza-2′-deoxycytidine. J Biol Chem 257: 2041–2048 (1982).
Flatau E, Gonzales FA, Michalowsky LA, Jones PA: DNA methylation in 5-aza-2′-deoxycytidine-resistant variants of C3H 10T1/2 C18 cells. Mol Cell Biol 4: 2098–2102 (1984).
Gasson JC, Ryden T, Bourgeois S: Role of de novo DNA methylation in the glucocorticoid resistance of a T-lymphoid cell line. Nature 302: 621–623 (1983).
Gelvin SB, Karcher SJ, DiRita VJ: Methylation of the T-DNA in Agrobacterium tumefaciens and in several crown gall tumors. Nucl Acids Res 11: 159–174 (1983).
Gounari F, Banks GR, Khazaie K, Jeggo PA, Holliday R: Gene reactivation: a tool for the isolation of mammalian DNA methylation mutants. Genes & Devel 1: 899–912 (1987).
Gruenbaum Y, Cedar H, Razin A: Substrate and sequence specificity of a eukaryotic DNA methylase. Nature 295: 620–622 (1982).
Hepburn AG, Clarke LE, Pearson L, White J: The role of cytosine methylation in the control of nopaline synthase gene expression in a plant tumor. J Mol Appl Genet 2: 315–329 (1983).
Holliday R: The inheritance of epigenetic effects. Science 238: 163–170 (1987).
Horsch RB, Fry JE, Hoffmann NL, Eichholtz D, Rogers SG, Fraley RT: A simple and general method for transferring genes into plants. Science 227: 1229–1231 (1985).
Jones JDG, Gilbert DE, Grady KL, Jorgensen RA: T-DNA structure and gene expression in petunia plants transformed by Agrobacterium tumefaciens C58 derivatives. Mol Gen Genet 207: 478–485 (1987).
Jones PA: Gene activation by 5-azacytidine. In: Razin A, Cedar H, Riggs AD (eds) DNA Methylation.. Biochemistry and Biological Significance, pp. 165–187. Springer-Verlag, New York (1984).
Jones PA: Altering gene expression with 5-azacytidine. Cell 40: 485–486 (1985).
Niwa O, Sugahara T: 5-Azacytidine induction of mouse endogenous type C virus and suppression of DNA methylation. Proc Natl Acad Sci USA 78: 6290–6294 (1981).
Peerbolte R, Leenhouts K, Hooykaas-van Slogteren GMS, Wullems GJ, Schilperoort RA: Clones from a shooty tobacco crown gall tumor II: irregular T-DNA structures and organization, T-DNA methylation and conditional expression of opine genes. Plant Mol Biol 7: 285–299 (1986).
Quemada H, Roth EJ, Lark KG: Changes in methylation of tissue cultured soybean cells detected by digestion with the restriction enzymes HpaII and MspI. Plant Cell Reports 6: 63–66 (1987).
Razin A: DNA methylation patterns: formation and biological functions. In: Razin A, Cedar H, Riggs AD (eds) DNA Methylation. Biochemistry and Biological Significance, pp. 127–146. Springer-Verlag, New York (1984).
Reid RA, John MC, Amasino RA: Deoxyribonuclease I sensitivity of the T-DNA ipt gene is associated with gene expression. Biochemistry 27: 5748–5754 (1988).
Santi DV, Garrett CE, Barr PJ: On the mechanism of inhibition of DNA-cytosine methyltransferases by cytosine analogs. Cell 33: 9–10 (1983).
Schwartz D, Dennis E: Transposase activity of the Ac controlling element in maize is regulated by its degree of methylation. Mol Gen Genet 205: 476–482 (1986).
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Klaas, M., John, M.C., Crowell, D.N. et al. Rapid induction of genomic demethylation and T-DNA gene expression in plant cells by 5-azacytosine derivatives. Plant Mol Biol 12, 413–423 (1989). https://doi.org/10.1007/BF00017581
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DOI: https://doi.org/10.1007/BF00017581