Abstract
Methionine is an essential amino acid that plays a significant role in one-carbon metabolism. One-carbon metabolism pathways include the folate cycle, transsulfuration pathway, and methionine metabolism cycle as major components. They are deeply interconnected and yield a single-carbon molecule—the methyl group CH3—via the universal methyl donor, S-adenosylmethionine (SAM). CH3 is an integral component of epigenomic regulation via its role in the methylation of nuclear material. Thus, methionine exposure levels are expected to impact epigenomic regulation. Epigenomic imbalances are a known significant cause for neurodevelopmental disorders (ND). Extrapolating, methionine imbalance should lead to ND causation via epigenomic deregulation. In this chapter we collect evidence for such a mechanism of disease, and show that the body does seem to be methionine sensitive, and that methionine metabolism imbalances indeed cause ND. We also discuss the modulation of methionine dietary intake as a potential therapeutic.
While there exists a significant amount of literature for other major methyl donors such as folate, betaine, and choline, it is only recently that evidence for methionine impact on health is becoming known. However, as the more direct precursor to SAM, the body appears more sensitive to methionine exposure. This chapter is expected to fill a vital void in our appreciation for methionine in terms of epigenomic regulation and ND, in its capacity as a major methyl donor.
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References
Aref-Eshghi E, Kerkhof J, Pedro VP, Barat-Houari M, Ruiz-Pallares N, Andrau JC et al (2020) Evaluation of DNA methylation episignatures for diagnosis and phenotype correlations in 42 Mendelian neurodevelopmental disorders. Am J Hum Genet 106(3):356–370. https://doi.org/10.1016/j.ajhg.2020.01.019
Bastaki KN, Alwan S, Zahir FR (2020) In: Essa MM, Qoronfleh MW (eds) Maternal prenatal exposures in pregnancy and autism spectrum disorder: an insight into the epigenetics of drugs and diet as key environmental influences BT—personalized food intervention and therapy for autism spectrum disorder management. Springer International Publishing, Cham, pp 143–162. https://doi.org/10.1007/978-3-030-30402-7_5
Belardo A, Gevi F, Zolla L (2019) The concomitant lower concentrations of vitamins B6, B9 and B12 may cause methylation deficiency in autistic children. J Nutr Biochem 70:38–46. https://doi.org/10.1016/j.jnutbio.2019.04.004
Bend EG, Aref-Eshghi E, Everman DB, Rogers RC, Cathey SS, Prijoles EJ et al (2019) Gene domain-specific DNA methylation episignatures highlight distinct molecular entities of ADNP syndrome. Clin Epigenetics 11(1):64. https://doi.org/10.1186/s13148-019-0658-5
Cerrato F, Sparago A, Ariani F, Brugnoletti F, Calzari L, Coppedè F et al (2020) DNA methylation in the diagnosis of monogenic diseases. Genes 11(4):355. https://doi.org/10.3390/genes11040355
Chamberlin ME, Ubagai T, Mudd SH, Thomas J, Pao VY, Nguyen TK et al (2000) Methionine adenosyltransferase I/III deficiency: novel mutations and clinical variations. Am J Hum Genet 66(2):347–355. https://doi.org/10.1086/302752
Cheng J, Eskenazi B, Widjaja F, Cordero JF, Hendren RL (2019) Improving autism perinatal risk factors: a systematic review. Med Hypotheses 127:26–33. https://doi.org/10.1016/j.mehy.2019.03.012
Chien Y-H, Abdenur JE, Baronio F, Bannick AA, Corrales F, Couce M et al (2015) Mudd’s disease (MAT I/III deficiency): a survey of data for MAT1A homozygotes and compound heterozygotes. Orphanet J Rare Dis 10(1):99. https://doi.org/10.1186/s13023-015-0321-y
Clare CE, Brassington AH, Kwong WY, Sinclair KD (2019) One-carbon metabolism: linking nutritional biochemistry to epigenetic programming of long-term development. Annu Rev Anim Biosci 7(1):263–287. https://doi.org/10.1146/annurev-animal-020518-115206
Clemens AW, Gabel HW (2020) Emerging insights into the distinctive neuronal methylome. Trends Genet 36(11):816–832. https://doi.org/10.1016/j.tig.2020.07.009
Coppedè F, Stoccoro A, Tannorella P, Migliore L (2019) Plasma homocysteine and polymorphisms of genes involved in folate metabolism correlate with DNMT1 gene methylation levels. Metabolites 9(12):298. https://doi.org/10.3390/metabo9120298
de Mendoza A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T et al (2021) The emergence of the brain non-CpG methylation system in vertebrates. Nat Ecol Evol 5(3):369–378. https://doi.org/10.1038/s41559-020-01371-2
Dutta S, Shaw J, Chatterjee A, Sarkar K, Usha R, Chatterjee A et al (2011) Importance of gene variants and co-factors of folate metabolic pathway in the etiology of idiopathic intellectual disability. Nutr Neurosci 14(5):202–209. https://doi.org/10.1179/1476830511Y.0000000016
Efimova OA, Koltsova AS, Krapivin MI, Tikhonov AV, Pendina AA (2020) Environmental epigenetics and genome flexibility: focus on 5-hydroxymethylcytosine. Int J Mol Sci 21(9):3223. https://doi.org/10.3390/ijms21093223
Fahrner JA, Bjornsson HT (2014) Mendelian disorders of the epigenetic machinery: tipping the balance of chromatin states. Annu Rev Genomics Hum Genet 15:269–293. https://doi.org/10.1146/annurev-genom-090613-094245
Furujo M, Kinoshita M, Nagao M, Kubo T (2012) Methionine adenosyltransferase I/III deficiency: neurological manifestations and relevance of S-adenosylmethionine. Mol Genet Metab 107(3):253–256. https://doi.org/10.1016/j.ymgme.2012.08.002
Gao Y, Sheng C, Xie RH, Sun W, Asztalos E, Moddemann D et al (2016) New perspective on impact of folic acid supplementation during pregnancy on neurodevelopment/autism in the offspring children—a systematic review. PLoS One 11(11):1–16. https://doi.org/10.1371/journal.pone.0165626
Goodrich AJ, Volk HE, Tancredi DJ, McConnell R, Lurmann FW, Hansen RL, Schmidt RJ (2018) Joint effects of prenatal air pollutant exposure and maternal folic acid supplementation on risk of autism spectrum disorder. Autism Res 11(1):69–80. https://doi.org/10.1002/aur.1885
Guo JU, Su Y, Shin JH, Shin J, Li H, Xie B et al (2014) Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat Neurosci 17(2):215–222. https://doi.org/10.1038/nn.3607
Guo BQ, Ding SB, Li HB (2020) Blood biomarker levels of methylation capacity in autism spectrum disorder: a systematic review and meta-analysis. Acta Psychiatr Scand 141(6):492–509. https://doi.org/10.1111/acps.13170
Gupta S, Kim SY, Artis S, Molfese DL, Schumacher A, Sweatt JD et al (2010) Histone methylation regulates memory formation. J Neurosci 30(10):3589–3599. https://doi.org/10.1523/JNEUROSCI.3732-09.2010
Haghshenas S, Bhai P, Aref-Eshghi E, Sadikovic B (2020) Diagnostic utility of genome-wide DNA methylation analysis in Mendelian neurodevelopmental disorders. Int J Mol Sci 21(23):9303. https://doi.org/10.3390/ijms21239303
Harvey Mudd S, Braverman N, Pomper M, Tezcan K, Kronick J, Jayakar P et al (2003) Infantile hypermethioninemia and hyperhomocysteinemia due to high methionine intake: a diagnostic trap. Mol Genet Metab 79(1):6–16. https://doi.org/10.1016/S1096-7192(03)00066-0
Helsmoortel C, Vulto-van Silfhout AT, Coe BP, Vandeweyer G, Rooms L, van den Ende J et al (2014) A SWI/SNF-related autism syndrome caused by de novo mutations in ADNP. Nat Genet 46(4):380–384. https://doi.org/10.1038/ng.2899
Herskovits AZ, Guarente L (2014) SIRT1 in neurodevelopment and brain senescence. Neuron 81(3):471–483. https://doi.org/10.1016/j.neuron.2014.01.028
Irva H-P, Croen LA, Hansen R, Jones CR, van de Water J, Pessah IN (2006) The CHARGE study: an epidemiologic investigation of genetic and environmental factors contributing to autism. Environ Health Perspect 114(7):1119–1125. https://doi.org/10.1289/ehp.8483
James SJ, Melnyk S, Pogribna M, Pogribny IP, Caudill MA (2002) Elevation in S-adenosylhomocysteine and DNA hypomethylation: potential epigenetic mechanism for homocysteine-related pathology. J Nutr 132(8):2361S–2366S. https://doi.org/10.1093/jn/132.8.2361S
James SJ, Melnyk S, Jernigan S, Cleves MA, Halsted CH, Wong DH et al (2006) Metabolic endophenotype and related genotypes are associated with oxidative stress in children with autism. Am J Med Genet B Neuropsychiatr Genet 141B(8):947–956. https://doi.org/10.1002/ajmg.b.30366
James P, Sajjadi S, Tomar AS, Saffari A, Fall CHD, Prentice AM et al (2018) Candidate genes linking maternal nutrient exposure to offspring health via DNA methylation: a review of existing evidence in humans with specific focus on one-carbon metabolism. Int J Epidemiol 47(6):1910–1937. https://doi.org/10.1093/ije/dyy153
Kinde B, Gabel HW, Gilbert CS, Griffith EC, Greenberg ME (2015) Reading the unique DNA methylation landscape of the brain: non-CpG methylation, hydroxymethylation, and MeCP2. Proc Natl Acad Sci U S A 112(22):6800–6806. https://doi.org/10.1073/pnas.1411269112
Kishi T, Yoshimura R, Kitajima T, Okochi T, Okumura T, Tsunoka T et al (2010) SIRT1 gene is associated with major depressive disorder in the Japanese population. J Affect Disord 126(1):167–173. https://doi.org/10.1016/j.jad.2010.04.003
Kishi T, Fukuo Y, Kitajima T, Okochi T, Yamanouchi Y, Kinoshita Y et al (2011) SIRT1 gene, schizophrenia and bipolar disorder in the Japanese population: an association study. Genes Brain Behav 10(3):257–263. https://doi.org/10.1111/j.1601-183X.2010.00661.x
Kochmanski J, Bernstein AI (2020) The impact of environmental factors on 5-hydroxymethylcytosine in the brain. Curr Environ Health Rep 7(2):109–120. https://doi.org/10.1007/s40572-020-00268-3
Kriaucionis S, Heintz N (2009) The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science (New York, NY) 324(5929):929–930. https://doi.org/10.1126/science.1169786
Li M, Francis E, Hinkle SN, Ajjarapu AS, Zhang C (2019) Preconception and prenatal nutrition and neurodevelopmental disorders: a systematic review and meta-analysis. Nutrients 11(7):1628. https://doi.org/10.3390/nu11071628
Libert S, Pointer K, Bell EL, Das A, Cohen DE, Asara JM et al (2011) SIRT1 activates MAO-A in the brain to mediate anxiety and exploratory drive. Cell 147(7):1459–1472. https://doi.org/10.1016/j.cell.2011.10.054
Lintas C (2019) Linking genetics to epigenetics: the role of folate and folate-related pathways in neurodevelopmental disorders. Clin Genet 95(2):241–252. https://doi.org/10.1111/cge.13421
Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND et al (2013) Global epigenomic reconfiguration during mammalian brain development. Science (New York, NY) 341(6146):1237905. https://doi.org/10.1126/science.1237905
Liu M, Pile LA (2017) The transcriptional corepressor SIN3 directly regulates genes involved in methionine catabolism and affects histone methylation, linking epigenetics and metabolism. J Biol Chem 292(5):1970–1976. https://doi.org/10.1074/jbc.M116.749754
Lozoya OA, Martinez-Reyes I, Wang T, Grenet D, Bushel P, Li J et al (2018) Mitochondrial nicotinamide adenine dinucleotide reduced (NADH) oxidation links the tricarboxylic acid (TCA) cycle with methionine metabolism and nuclear DNA methylation. PLoS Biol 16(4):1–23. https://doi.org/10.1371/journal.pbio.2005707
Luka Z, Capdevila A, Mato JM, Wagner C (2006) A glycine N-methyltransferase knockout mouse model for humans with deficiency of this enzyme. Transgenic Res 15(3):393–397. https://doi.org/10.1007/s11248-006-0008-1
Mato JM, Martínez-Chantar ML, Lu SC (2013) S-adenosylmethionine metabolism and liver disease. Ann Hepatol 12(2):183–189. https://doi.org/10.1016/S1665-2681(19)31355-9
McCoy CR, Jackson NL, Brewer RL, Moughnyeh MM, Smith DL Jr, Clinton SM (2018) A paternal methyl donor depleted diet leads to increased anxiety- and depression-like behavior in adult rat offspring. Biosci Rep 38(4):BSR20180730. https://doi.org/10.1042/BSR20180730
McKee SE, Zhang S, Chen L, Rabinowitz JD, Reyes TM (2018) Perinatal high fat diet and early life methyl donor supplementation alter one carbon metabolism and DNA methylation in the brain. J Neurochem 145(5):362–373. https://doi.org/10.1111/jnc.14319
Melnyk S, Fuchs GJ, Schulz E, Lopez M, Kahler SG, Fussell JJ et al (2012) Metabolic imbalance associated with methylation dysregulation and oxidative damage in children with autism. J Autism Dev Disord 42(3):367–377. https://doi.org/10.1007/s10803-011-1260-7
Mentch SJ, Mehrmohamadi M, Huang L, Liu X, Gupta D, Mattocks D et al (2015) Histone methylation dynamics and gene regulation occur through the sensing of one-carbon metabolism. Cell Metab 22(5):861–873. https://doi.org/10.1016/j.cmet.2015.08.024
Mitchell ES, Conus N, Kaput J (2014) B vitamin polymorphisms and behavior: evidence of associations with neurodevelopment, depression, schizophrenia, bipolar disorder and cognitive decline. Neurosci Biobehav Rev 47:307–320. https://doi.org/10.1016/j.neubiorev.2014.08.006
Mladenović D, Radosavljević T, Hrnčić D, Rasic-Markovic A, Stanojlović O (2019) The effects of dietary methionine restriction on the function and metabolic reprogramming in the liver and brain—implications for longevity. Rev Neurosci 30(6):581–593. https://doi.org/10.1515/revneuro-2018-0073
Mudd SH (2011) Hypermethioninemias of genetic and non-genetic origin: a review. Am J Med Genet C: Semin Med Genet 157(1):3–32. https://doi.org/10.1002/ajmg.c.30293
Muehlmann AM, Bliznyuk N, Duerr I, Yang TP, Lewis MH (2020) Early exposure to a methyl donor supplemented diet and the development of repetitive motor behavior in a mouse model. Dev Psychobiol 62(1):77–87. https://doi.org/10.1002/dev.21914
Olteanu H, Banerjee R (2001) Human methionine synthase reductase, a soluble P-450 reductase-like dual flavoprotein, is sufficient for NADPH-dependent methionine synthase activation*. J Biol Chem 276(38):35558–35563. https://doi.org/10.1074/jbc.M103707200
Olteanu H, Munson T, Banerjee R (2002) Differences in the efficiency of reductive activation of methionine synthase and exogenous electron acceptors between the common polymorphic variants of human methionine synthase reductase. Biochemistry 41(45):13378–13385. https://doi.org/10.1021/bi020536s
Orozco JS, Hertz-Picciotto I, Abbeduto L, Slupsky CM (2019) Metabolomics analysis of children with autism, idiopathic-developmental delays, and Down syndrome. Transl Psychiatry 9(1):243. https://doi.org/10.1038/s41398-019-0578-3
Parrish RR, Buckingham SC, Mascia KL, Johnson JJ, Matyjasik MM, Lockhart RM, Lubin FD (2015) Methionine increases BDNF DNA methylation and improves memory in epilepsy. Ann Clin Transl Neurol 2(4):401–416. https://doi.org/10.1002/acn3.183
Pauwels S, Doperé I, Huybrechts I, Godderis L, Koppen G, Vansant G (2014) Validation of a food-frequency questionnaire assessment of methyl-group donors using estimated diet records and plasma biomarkers: the method of triads. Int J Food Sci Nutr 65(6):768–773. https://doi.org/10.3109/09637486.2014.917149
Pauwels S, Duca RC, Devlieger R, Freson K, Straetmans D, Van Herck E et al (2016) Maternal methyl-group donor intake and global DNA (hydroxy)methylation before and during pregnancy. Nutrients 8(8):474. https://doi.org/10.3390/nu8080474
Pauwels S, Ghosh M, Duca RC, Bekaert B, Freson K, Huybrechts I et al (2017a) Dietary and supplemental maternal methyl-group donor intake and cord blood DNA methylation. Epigenetics 12(1):1–10. https://doi.org/10.1080/15592294.2016.1257450
Pauwels S, Ghosh M, Duca RC, Bekaert B, Freson K, Huybrechts I et al (2017b) Maternal intake of methyl-group donors affects DNA methylation of metabolic genes in infants. Clin Epigenetics 9(1):16. https://doi.org/10.1186/s13148-017-0321-y
Pauwels S, Symons L, Vanautgaerden E-L, Ghosh M, Duca RC, Bekaert B et al (2019) The influence of the duration of breastfeeding on the infant’s metabolic epigenome. Nutrients 11(6):1408. https://doi.org/10.3390/nu11061408
Pizzorusso T, Tognini P (2020) Interplay between metabolism, nutrition and epigenetics in shaping brain DNA methylation, neural function and behavior. Genes 11(7):1–18. https://doi.org/10.3390/genes11070742
Price AJ, Collado-Torres L, Ivanov NA, Xia W, Burke EE, Shin JH et al (2019) Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation. Genome Biol 20(1):196. https://doi.org/10.1186/s13059-019-1805-1
Rustad SR, Papale LA, Alisch RS (2019) In: Binder EB, Klengel T (eds) DNA methylation and hydroxymethylation and behavior BT—behavioral neurogenomics. Springer International Publishing, Cham, pp 51–82. https://doi.org/10.1007/7854_2019_104
Saha T, Chatterjee M, Sinha S, Rajamma U, Mukhopadhyay K (2017) Components of the folate metabolic pathway and ADHD core traits: an exploration in eastern Indian probands. J Hum Genet 62(7):687–695. https://doi.org/10.1038/jhg.2017.23
Saha T, Chatterjee M, Verma D, Ray A, Sinha S, Rajamma U, Mukhopadhyay K (2018) Genetic variants of the folate metabolic system and mild hyperhomocysteinemia may affect ADHD associated behavioral problems. Prog Neuropsychopharmacol Biol Psychiatry 84:1–10. https://doi.org/10.1016/j.pnpbp.2018.01.016
Schaevitz LR, Berger-Sweeney JE (2012) Gene–environment interactions and epigenetic pathways in autism: the importance of one-carbon metabolism. ILAR J 53(3–4):322–340. https://doi.org/10.1093/ilar.53.3-4.322
Schmidt RJ, Tancredi DJ, Krakowiak P, Hansen RL, Ozonoff S (2014) Maternal intake of supplemental iron and risk of autism spectrum disorder. Am J Epidemiol 180(9):890–900. https://doi.org/10.1093/aje/kwu208
Schmidt RJ, Kogan V, Shelton JF, Delwiche L, Hansen RL, Ozonoff S (2021) Combined prenatal pesticide exposure and folic acid intake in relation to autism spectrum disorder. Environ Health Perspect 125(9):97007. https://doi.org/10.1289/EHP604
Shaik Mohammad N, Sai Shruti P, Bharathi V, Krishna Prasad C, Hussain T, Alrokayan SA et al (2016) Clinical utility of folate pathway genetic polymorphisms in the diagnosis of autism spectrum disorders. Psychiatr Genet 26(6):281–286
Shea TB, Rogers E (2014) Lifetime requirement of the methionine cycle for neuronal development and maintenance. Curr Opin Psychiatry 27(2):138–142. https://doi.org/10.1097/YCO.0000000000000046
Shulha HP, Cheung I, Whittle C, Wang J, Virgil D, Lin CL et al (2012) Epigenetic signatures of autism: trimethylated H3K4 landscapes in prefrontal neurons. Arch Gen Psychiatry 69(3):314–324. https://doi.org/10.1001/archgenpsychiatry.2011.151
Siu MT, Butcher DT, Turinsky AL, Cytrynbaum C, Stavropoulos DJ, Walker S et al (2019) Functional DNA methylation signatures for autism spectrum disorder genomic risk loci: 16p11.2 deletions and CHD8 variants. Clin Epigenetics 11(1):103. https://doi.org/10.1186/s13148-019-0684-3
Tang S, Fang Y, Huang G, Xu X, Padilla-Banks E, Fan W et al (2017) Methionine metabolism is essential for SIRT 1-regulated mouse embryonic stem cell maintenance and embryonic development. EMBO J 36(21):3175–3193. https://doi.org/10.15252/embj.201796708
Torres RF, Kouro R, Kerr B (2019) Writers and readers of DNA methylation/hydroxymethylation in physiological aging and its impact on cognitive function. Neural Plast 2019:5982625. https://doi.org/10.1155/2019/5982625
Weiner AS, Boyarskikh UA, Voronina EN, Mishukova OV, Filipenko ML (2014) Methylenetetrahydrofolate reductase C677T and methionine synthase A2756G polymorphisms influence on leukocyte genomic DNA methylation level. Gene 533(1):168–172. https://doi.org/10.1016/j.gene.2013.09.098
Yang J, Bashkenova N, Zang R, Huang X, Wang J (2020) The roles of TET family proteins in development and stem cells. Development (Cambridge, England) 147(2):dev183129. https://doi.org/10.1242/dev.183129
Yasin H, Stowe R, Wong CK, Jithesh PV, Zahir FR (2020) First whole transcriptome RNAseq on CHD8 haploinsufficient patient and meta-analyses across cellular models uncovers likely key pathophysiological target genes. Cureus 12(11):e11571–e11571. https://doi.org/10.7759/cureus.11571
Zahir FR, Brown CJ (2011) Epigenetic impacts on neurodevelopment: pathophysiological mechanisms and genetic modes of action. Pediatr Res 69(8):92–100. https://doi.org/10.1203/PDR.0b013e318213565e
Zeisel SH, Blusztajn JK (1994) Choline and human nutrition. Annu Rev Nutr 14(1):269–296. https://doi.org/10.1146/annurev.nu.14.070194.001413
Zhang N (2018) Role of methionine on epigenetic modification of DNA methylation and gene expression in animals. Anim Nutr 4(1):11–16. https://doi.org/10.1016/j.aninu.2017.08.009
Zhang Y, Hodgson NW, Trivedi MS, Abdolmaleky HM, Fournier M, Cuenod M et al (2016) Decreased brain levels of vitamin B12 in aging, autism and schizophrenia. PLoS One 11(1):1–19. https://doi.org/10.1371/journal.pone.0146797
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Mubarak, G., Zahir, F.R. (2022). Methionine Is a Major Methyl Donor Whose Dietary Intake Likely Plays a Causative Role for Neurodevelopmental Disorders via Epigenomic Profile Alterations. In: Qoronfleh, M.W., Essa, M.M., Saravana Babu, C. (eds) Proteins Associated with Neurodevelopmental Disorders. Nutritional Neurosciences. Springer, Singapore. https://doi.org/10.1007/978-981-15-9781-7_4
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