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Development and Application of IT Systems in Biobank Studies

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Population Biobank Studies: A Practical Guide

Abstract

Modern biobank studies tend to be extremely large and complex, and will need to continue for decades. Their success relies critically upon the development and application of comprehensive information technology (IT) systems, not only to collect and store data securely, but also to manage study operations efficiently. Across multiple categories of software, quality and efficiency advantages over traditional paper data collection are potentially profound. However, they can only be fully realised with a carefully planned and organised approach to establishing reliable and coherent infrastructure, selecting or developing software that meets requirements, and choosing the appropriate hardware upon which it will run. Whilst the technical aspects are myriad, the development of biobank IT systems should be centred on people, i.e., those who work on the study and those who participate in it. This guiding principle underpins all decisions throughout the lifecycle, from planning, through development, to implementation. Special care is needed when working with external IT teams, and when integrating specialist hardware into the study. A number of cross-cutting practical issues, such as data and system security, require careful consideration across the whole development effort.

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Abbreviations

AI:

Artificial intelligence

API:

Application programming interface

CAS:

Common access system

CKB:

China Kadoorie Biobank

COTS:

Commodity-off-the-shelf (of software)

CSS:

Cascading style sheets

DBA:

Database administrator

GDPR:

General data protection regulation

HTML:

Hypertext markup language

HTTP:

Hypertext transfer protocol

HTTPS:

Hypertext transfer protocol secure

ICC:

International co-ordinating centre

ID:

Identifier

IDC:

Internet data centre

IT:

Information technology

KVM:

Kernel-based virtual machine

MMS:

Material management system

NCC:

National co-ordinating centre

NSIS:

Nullsoft scriptable install system

OCR:

Optical character recognition

PDF:

Portable document format

PHP:

PHP: Hypertext processor (a recursive acronym)

PVD:

Portable validation device

RC:

Regional centre

RFID:

Radio-frequency identification

SOP:

Standard operating procedure

UI:

User interface

URS:

User requirements specification

UUID:

Universally unique identifier

VM:

Virtual machine

XP:

Extreme programming

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Correspondence to Xiaoming Yang .

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© 2020 Springer Nature Singapore Pte Ltd.

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Lancaster, G., Gilbert, S., Yang, X. (2020). Development and Application of IT Systems in Biobank Studies. In: Chen, Z. (eds) Population Biobank Studies: A Practical Guide. Springer, Singapore. https://doi.org/10.1007/978-981-15-7666-9_7

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