Abstract
Modern biobank studies tend to be extremely large and complex, and will need to continue for decades. Their success relies critically upon the development and application of comprehensive information technology (IT) systems, not only to collect and store data securely, but also to manage study operations efficiently. Across multiple categories of software, quality and efficiency advantages over traditional paper data collection are potentially profound. However, they can only be fully realised with a carefully planned and organised approach to establishing reliable and coherent infrastructure, selecting or developing software that meets requirements, and choosing the appropriate hardware upon which it will run. Whilst the technical aspects are myriad, the development of biobank IT systems should be centred on people, i.e., those who work on the study and those who participate in it. This guiding principle underpins all decisions throughout the lifecycle, from planning, through development, to implementation. Special care is needed when working with external IT teams, and when integrating specialist hardware into the study. A number of cross-cutting practical issues, such as data and system security, require careful consideration across the whole development effort.
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Abbreviations
- AI:
-
Artificial intelligence
- API:
-
Application programming interface
- CAS:
-
Common access system
- CKB:
-
China Kadoorie Biobank
- COTS:
-
Commodity-off-the-shelf (of software)
- CSS:
-
Cascading style sheets
- DBA:
-
Database administrator
- GDPR:
-
General data protection regulation
- HTML:
-
Hypertext markup language
- HTTP:
-
Hypertext transfer protocol
- HTTPS:
-
Hypertext transfer protocol secure
- ICC:
-
International co-ordinating centre
- ID:
-
Identifier
- IDC:
-
Internet data centre
- IT:
-
Information technology
- KVM:
-
Kernel-based virtual machine
- MMS:
-
Material management system
- NCC:
-
National co-ordinating centre
- NSIS:
-
Nullsoft scriptable install system
- OCR:
-
Optical character recognition
- PDF:
-
Portable document format
- PHP:
-
PHP: Hypertext processor (a recursive acronym)
- PVD:
-
Portable validation device
- RC:
-
Regional centre
- RFID:
-
Radio-frequency identification
- SOP:
-
Standard operating procedure
- UI:
-
User interface
- URS:
-
User requirements specification
- UUID:
-
Universally unique identifier
- VM:
-
Virtual machine
- XP:
-
Extreme programming
References
Beck K. Extreme programming explained: Embrace change. 2nd ed. Upper Saddle River: Pearson Education; 2004.
Brooks FP Jr. The mythical man-month: Essays on software engineering. Anniversary ed. Boston: Addison-Wesley Longman; 1995.
Ferguson N, Schneier B. Practical cryptography. Indianapolis: Wiley; 2003.
Henney K. (2002). The imperial clothing crisis. Retrieved from http://www.two-sdg.demon.co.uk/curbralan/papers/minimalism/TheImperialClothingCrisis.html
Hoare CAR. The Emperor’s old clothes. Commun ACM. 1981;24(2):75–83.
Leach P, Mealling M, Salz R. (2005). A Universally Unique IDentifier (UUID) URN Namespace, RFC 4122. https://doi.org/10.17487/RFC4122
Mell P, Grance T. The NIST definition of cloud computing. (800-145). Gaithersburg: National Institute of Standards and Technology; 2011.
Press WH, Flannery BP, Teukolsky SA, Vetterling WT. Numerical Recipes in C. 2nd ed. Cambridge: Cambridge University Press; 1992.
UK Biobank Limited. (2007). UK Biobank: Protocol for a large-scale prospective epidemiological resource. Retrieved from https://www.ukbiobank.ac.uk/wp-content/uploads/2011/11/UK-Biobank-Protocol.pdf
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Lancaster, G., Gilbert, S., Yang, X. (2020). Development and Application of IT Systems in Biobank Studies. In: Chen, Z. (eds) Population Biobank Studies: A Practical Guide. Springer, Singapore. https://doi.org/10.1007/978-981-15-7666-9_7
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DOI: https://doi.org/10.1007/978-981-15-7666-9_7
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