Abstract
Two theoretical approaches, using an empirical representation of the energy have been used to provide dynamic views of macrocyclic receptors: analysis of normal modes of vibration and molecular dynamics simulations. Molecules under study are prototypes of synthetic ionophores: 18-crown-6 (18–6), the bicyclic (222) and tricyclic (SC24) cryptands. They are considered in the free state in various conformations, as well as in their alkali complexes. The NH4 + cryptates of 222 and of SC24 are also compared. Other bicyclic cryptands (111, 211, 221), and cryptates of SC24 (SC24,4H+/Cl- and Br-, SC24,2H+/H2O) are included for purpose of comparison.
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J.P. BEHR, M. KIRCH, J.M. LEHN, J. Amer. Chem. Soc. 1985, 107, 241.
W. SIMON, W.E. MORF, P.C. MEIER, Struct. Bonding (Berlin) 1973, 16, 113.
J.M. LEHN in “Physical Chemistry of Transmembrane Ion Motions”, G. Spach Ed., Elsevier New York 1983, pp. 181–206
J.J. GRIMALDI and J.M. LEHN, J. Amer. Chem. Soc. 1979, 101, 1333
A. HRICIGA, J.M. LEHN, Proc. Nat. Acad. Sci. USA 1983, 80, 6426.
J.M. LEHN, Science 1985, 227,849.
“Supramolecular Chemistry-Scope and Perspectives. Molecules, Supermolecules and Molecular Devices” (Nobel Lecture), Angew. Chem. Int. Ed. 1988, 27, 89 and references cited therein
J. M. LEHN, Structure and Bonding (Berlin) 1973, 16, 1; Acc. Chem. Res. 1978, 11, 49.
J. DALE, Israël J. Chem. 1980, 20, 3.
M. DOBLER, “Lonophores and their structures”, Wiley Interscience Pub., New-York, 1981.
J.D. DUNITZ, P. SEILER, Acta Cryst. 1974, B30, 2739.
E. MAVERICK, P. SEILER, B. SCHWEIZER and J.D. DUNITZ, Acta Cryst. 1980, B36, 615
B. DIETRICH, J.M. LEHN, J.P. SAUVAGE, J. BLANZAT, Tetrahedron 1973, 29, 1629.
J.M. LEHN, Topics Current Chem. 1970, 15, 311.
F. EGGERS, T. FUNCK, K.H. RICHMANN, H. SCHNEIDER, E.M. EYRING, S. PETRUCCI, J. Phys. Chem. 1987, 91, 1961.
H. SCHNEIDER, S. RAUH, S. PETRUCCI, J. Phys. Chem. 1981, 85, 2287.
B. METZ, J.M. ROSALKY, R. WEISS, J. C.S. Chem. Comm. 1976, 533.
J.M. LEHN, B. METZ, private communication.
E. GRAF, J.P. KINTZINGER, J.M. LEHN, J. LEMOIGNE, J. Amer. Chem. Soc. 1982 104, 1672.
G. WIPFF, P. KOLLMAN, J. Amer. Chem. Soc. 1982, 104, 3249.
R. PERRIN, C. DECORET, G. BERTHOLON, R. LAMARTINE, Nouv. J. Chimie, 1983, 7, 263.
M. DOBLER, Chimia, 1984, 38, 415
M.J. BOVILL, D.J. CHADWICK, J.D. SUTHERLAND, D. WATIN, J. Chem. Soc. Perkin Trans. 2, 1980, 1529
W.H.M. UITERWIJK, S. HARKEMA, B.W. van de WAAL, F. Göbel, H.T.M. NIBBELING, J. Chem. Soc. Perkin Trans. 2, 1983, 1843
W.H.M. UITERWIJK, S. HARKEMA, D. FEIL, J. Chem. Soc. Perkin Trans. 2, 1987, 721
G. WIPFF, P. KOLLMAN, Nouv. J. Chimie, 1985, 9, 457.
R. GEUE, S.H. JACOBSON, R. PIZER, J. Amer. Chem. Soc. 1986, 108, 1150.
G. WIPFF, J.M. WURTZ, unpublished results.
G. RANGHINO, S. ROMANO, J.M. LEHN, G. WIPFF, J. Amer. Chem. Soc. 1985, 107, 7873.
E.H. NORDLANDER, J.H. BURNS, Inorg. Chim. Acta 1986, 115, 31.
K. FUSHIMA, M. ITO, K. SAKURADA, S. SHIRAISHI, Chem. Lett. 1988, 323.
H. TAKEUCHI, T. ARAI, I. HARADA, J. Mol. Struct. 1986, 146, 197.
U.C. SINGH, P. WEINER, J. CALDWELL, P. KOLLMAN, AMBER 2.0,U.C. San Francisco, 1985.
P. KEBARLE, Ann. Rev. Phys. Chem. 1977, 28, 445.
J.M. WURTZ and G. WIPFF “MDNM”, an interactive program to display Molecular Dynamics and Normal Modes on an Evans-Sutherland picture system.
PS300 picture system at the Laboratoire de cristallographie biologique, Dr. D. Moras Director, IBMC, Strasbourg.
B. METZ, R. WEISS, Nouv. J. Chimie 1978, 2, 615.
B. DIETRICH, J.P. KINTZINGER, J.M. LEHN, B. METZ, A. ZAHIDI, J. Phys. Chem. 1987, 91, 6600.
B.M. PETTITT, M. KARPLUS, J. Amer. Chem. Soc. 1985, 107, 1166.
U. BURKERT, N.L ALLINGER, “Molecular Mechanics”, American Chemical Society; Washington D.C. 1982.
P. KOLLMAN, P. WEINER, A. DEARING, Biopolymers 1981, 20, 2583
J.M. BLANEY, P.K. WEINER, A. DEARING, P.A. KOLLMAN, E.C JORGENSEN, S.J. OATLEY, J.M. BURRIDGE, C.C.F. BLAKE, J. Amer. Chem. Soc 1982, 104, 6424.
Y.M. CAHEN, A.I. POPOV, J. Solution Chem. 1975, 4, 599.
A.T. TSATSAS, R.W. STEARNS, W.M. RISEN, J. Amer. Chem. Soc. 1972, 94, 5247.
M. FOUASSIER, J.C. LASSEGUES, J. Chim. Phys. 1978, 75, 865.
P. A. KOLLMAN, G. WIPFF, U.C. SINGH, J. Amer. Chem. Soc. 1985, 107, 2212.
J.M. WURTZ, Thèse de Doctorat, University Louis Pasteur, Strasbourg. To be submitted by 1988.
E. GRAF, J.M. LEHN, Helv. Chim. Acta 1981, 64, 1040.
T.P. LYBRAND, J.A. Mc CAMMON, G. WIPFF, Proc. Nat. Acad. Sci. USA 1986, 83, 833.
G. WIPFF, D. GEHIN, P. KOLLMAN J. Amer. Chem. Soc. 1988, 000.
G. WIPFF, P. AUFFINGER, unpublished results.
H. K. FRENSDORFF, J. Amer. Chem. Soc. 1971, 93, 600.
R.M. IZATT, R.E. TERRY, B.L HAYMORE, L.D. HANSEN, N.K. DALLEY, A.G. AVONDET, J.J. CHRISTENSEN, J. Amer. Chem. Soc. 1976, 98, 7620.
A. PULLMAN, in “Physical Chemistry of Transmembrane Ion Motions”, G. Spach Ed., Elsevier New York 1983 pp. 153–168.
N. GRESH, C. ETCHEBEST, O. DE LA LUZ ROJAS, A. PULLMAN, Int. J. Quant. Chem., Quant. Biol. Symp. 8, 1981, 109
N. GRESH, A. PULLMAN, Int. J. Quant. Chem., 1982, XXII, 709
E. KAUFFMANN, J-M LEHN, J-P SAUVAGE, Helv. Chim. Acta 1976, 59, 1099.
M. LEVITT, C. SANDER, P.S. STERN, J. Mol. Biol. 1985, 181, 423.
B. BROOKS, M. KARPLUS, Proc. Nat. Acad. Sc. USA 1985, 82, 4995.
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Wipff, G., Wurtz, J.M. (1988). Dynamic Views of Macrocyclic Receptors: Molecular Dynamics Simulations and Normal Modes Analysis. In: Pullman, A., Jortner, J., Pullman, B. (eds) Transport Through Membranes: Carriers, Channels and Pumps. The Jerusalem Symposia on Quantum Chemistry and Biochemistry, vol 21. Springer, Dordrecht. https://doi.org/10.1007/978-94-009-3075-9_1
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DOI: https://doi.org/10.1007/978-94-009-3075-9_1
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