Skip to main content

DArTFest – A Platform for High-Throughput Genome Profiling Within the Festuca – Lolium Complex

  • Conference paper
  • First Online:
Sustainable use of Genetic Diversity in Forage and Turf Breeding

Abstract

With the aim to facilitate high-throughput genome profiling and genetic and physical mapping within the Festuca-Lolium complex, we have developed a Diversity Arrays Technology (DArT) array for five important species: Festuca pratensis, Festuca arundinacea, Festuca glaucescens, Lolium perenne and Lolium multiflorum. The DArTFest array contains 7,680 probes derived from methyl-filtered genomic representations. Of 3,884 polymorphic DArT markers identified in the first marker discovery experiment, over 1,000 markers detected a positive allele in each species.

We assigned DArT markers to individual chromosome regions of F. pratensis using a series of single chromosome substitution and recombinant lines of F. pratensis in L. multiflorum. Moreover, we enriched the existing genetic map of F. pratensis by over 200 DArT markers and existing genetic map of L. multiflorum by over 500 DArT markers. The resources developed in this project will facilitate development of genetic maps in Festuca and Lolium, the analysis of genomic constitution in Festuca × Lolium hybrids, as well as marker-assisted selection for multiple traits.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Alm, V., Fang, C., Busso, C.S., Devos, K., Vollan, K. et al. 2003. A linkage map of meadow fescue (Festuca pratensis Huds.) and comparative mapping with other Poaceae species. Theor. Appl. Genet. 108:25–40.

    Article  PubMed  CAS  Google Scholar 

  • Felsenstein, J. 2004. PHYLIP (Phylogeny Inference Package) version 3.6. University of Washington, Seattle.

    Google Scholar 

  • Gupta, P.K., Rustgi, S., Mir, R.R. 2008. Array-based high-throughput DNA markers for crop improvement. Heredity 101:5–18.

    Article  PubMed  CAS  Google Scholar 

  • Hayward, M.D., Forster, J.W., Jones, J.G., Dolstra, O., Evans, C. et al. 1998. Genetic analysis of Lolium I. Identification of linkage groups and the establishment of a genetic map. Plant Breed. 117:451–455.

    Article  Google Scholar 

  • Jaccoud, D., Peng, K., Feinstein, D., Kilian, A. 2001. Diversity Arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res. 29(4):e25.

    Article  PubMed  CAS  Google Scholar 

  • Jauhar, P.P. 1993. Cytogenetics of the Festuca-Lolium complex. Relevance to Breeding. Monographs on Theor. Appl. Genet. Vol. 18, Springer-Verlag, Berlin, 255 p.

    Google Scholar 

  • Kopecký, D., Lukaszewski, A.J., Doležel, J. 2008. Meiotic behavior of individual chromosomes of Festuca pratensis in tetraploid Lolium multiflorum. Chromosome Res. 16:987–998.

    Article  PubMed  Google Scholar 

  • Kopecký , D., Bartoš, J., Lukaszewski, A.J., Baird, J.H., Černoch, V., Kölliker, R., Rognli, O.A., Blois, H., Caig, V., Lübberstedt, T., Studer, B., Doležel, J., Kilian, A. 2009. Development and mapping of DArT markers within the Festuca – Lolium complex. BMC Genomics 10:473.

    Google Scholar 

  • Saha, M.C., Mian, R., Zwonitzer, J.C., Chekhovskiy, K., Hopkins, A.A. 2005. An SSR- and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.) Theor. Appl. Genet. 110:323–336.

    Article  PubMed  CAS  Google Scholar 

  • Studer, B., Boller, B., Herrmann, D., Bauer, E., Posselt, U.K., Widmer, F., Koelliker, R. 2006. Genetic mapping reveals a single major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.). Theor. Appl. Genet. 113:661–671.

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by the Ministry of Agriculture of the Czech Republic (grant award NAZV QH71267) and the Czech Science Foundation (grant award 521/07/P479).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to David Kopecký .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer Science+Business Media B.V.

About this paper

Cite this paper

Kopecký, D. et al. (2010). DArTFest – A Platform for High-Throughput Genome Profiling Within the Festuca – Lolium Complex. In: Huyghe, C. (eds) Sustainable use of Genetic Diversity in Forage and Turf Breeding. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-8706-5_65

Download citation

Publish with us

Policies and ethics